Rh6BG195600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014414
Physical Location & Seq
Forward (+)
36774947 .. 36776901
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG195600.1

Sequence Viewer

Length: 540 bp
ATGGACGAAATCGAGGAAATGGTTCCGATACCCGATGATTCGAATCCTCCTCCGCAACCCAAAGCGAGGATGAAGGTTCCAGAAGTAGAGGTCCAGCTGTACCGACAAGGCAAAGGTCCGATCGACTCGTTCAAGTCGTGCCTCGGGGGTTGGGACCAGAACCAGTTGGAGGTTCAAGACATTCTCGACAAATACGGCTTCAAATCCCTTTACGCCTTCAATCCCCAGTCGGGTCGCGGCGTCCCCATCCGCTTTGACCCCCGCAACGGACGCTCTATGCTGCCCTATAGAGACGGATCCGAGGTTTACATCGACGGCGAGCCCAAGGATTCCTTGATCAAGCCAGTGACGAAGATCTTGCTTGGAGTAGCTGTTATGACTATCCTGATAACATTGGTTATGAAAGATCCTCCAGAGTTCGTCCAAAAATTTAATTTTTTTGGGGGGAACTTCCCTCCTTGGATCCTTGCTCTTGTGGTAATAGTTTTTACTCGAATGAGGAAGAGAACCAGGGATTTCCTGAAAAAACTTGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.49

Weight (kDa)

8.94

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71780
fragaria_vesca FvH4_2g12791
malus_domestica MD05G1036200.v1.1 MD10G1038300.v1.1
prunus_persica Prupe.8G044500_v2.0.a1 Prupe.8G044500_v2.0.a1
pyrus_communis pycom10g02630
rosa_chinensis RchiOBHm_Chr6g0273681
rosa_laevigata RLG00000013600
rosa_multiflora Rmu_sc0021426.1_g000002
rosa_roxburghii Rroxscaffold_7G00195130
rosa_rugosa Rorug06G0077200
rosa_samantha Rh6AG191500 Rh6BG195600 Rh6CG195100 Rh6DG186900
rosa_wichuraiana Rw6G016760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 237
AciI CCGC 4 cut(s) 53, 237, 250, 262
AclWI GGATC 5 cut(s) 291, 304, 401, 457, 470
AcsI RAATTY 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 4 cut(s) 66, 169, 230, 266
AgsI TTSAA 4 cut(s) 133, 176, 202, 220
AjnI CCWGG 1 cut(s) 509
AluBI AGCT 2 cut(s) 97, 371
AluI AGCT 2 cut(s) 97, 371
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 5 cut(s) 291, 304, 401, 457, 470
Ama87I CYCGRG 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 21
AspS9I GGNCC 3 cut(s) 91, 116, 154
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 3 cut(s) 91, 116, 154
BamHI GGATCC 2 cut(s) 296, 462
BanII GRGCYC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 267
BccI CCATC 1 cut(s) 254
BceAI ACGGC 2 cut(s) 211, 331
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 1 cut(s) 511
BclI TGATCA 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 286
BglII AGATCT 1 cut(s) 354
BisI GCNGC 2 cut(s) 238, 281
BlsI GCNGC 2 cut(s) 239, 282
Bme1390I CCNGG 1 cut(s) 511
Bme18I GGWCC 3 cut(s) 91, 116, 154
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 3 cut(s) 91, 116, 154
BmiI GGNNCC 5 cut(s) 24, 78, 155, 298, 464
BmrFI CCNGG 1 cut(s) 511
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 5 cut(s) 142, 300, 324, 458, 510
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 169, 230, 266
Bse1I ACTGG 3 cut(s) 163, 226, 344
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 1 cut(s) 511
BseDI CCNNGG 5 cut(s) 142, 300, 324, 458, 510
BseGI GGATG 2 cut(s) 75, 246
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 4 cut(s) 66, 169, 230, 266
BseNI ACTGG 3 cut(s) 163, 226, 344
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 143
BslFI GGGAC 2 cut(s) 167, 227
BslI CCNNNNNNNGG 4 cut(s) 66, 169, 230, 266
BsmAI GTCTC 1 cut(s) 285
BsmBI CGTCTC 1 cut(s) 285
BsmFI GGGAC 2 cut(s) 167, 227
BsoBI CYCGRG 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 6 cut(s) 120, 296, 336, 354, 406, 462
BspACI CCGC 4 cut(s) 53, 237, 250, 262
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 5 cut(s) 24, 78, 155, 298, 464
BspPI GGATC 5 cut(s) 291, 304, 401, 457, 470
BspT104I TTCGAA 1 cut(s) 41
BsrI ACTGG 3 cut(s) 163, 226, 344
BssECI CCNNGG 5 cut(s) 142, 300, 324, 458, 510
BssMI GATC 6 cut(s) 120, 296, 336, 354, 406, 462
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 324, 458
Bst2UI CCWGG 1 cut(s) 511
Bst6I CTCTTC 1 cut(s) 497
BstACI GRCGYC 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 320
BstF5I GGATG 2 cut(s) 75, 246
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 6 cut(s) 123, 299, 339, 357, 409, 465
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 6 cut(s) 120, 296, 336, 354, 406, 462
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 509
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 267
BstX2I RGATCY 4 cut(s) 296, 354, 406, 462
BstYI RGATCY 4 cut(s) 296, 354, 406, 462
BtsCI GGATG 2 cut(s) 75, 246
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 91, 116, 154
CseI GACGC 2 cut(s) 229, 279
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 5 cut(s) 97, 198, 322, 343, 371
CviKI_1 RGCY 5 cut(s) 97, 198, 322, 343, 371
CviQI GTAC 1 cut(s) 100
DpnI GATC 6 cut(s) 122, 298, 338, 356, 408, 464
DpnII GATC 6 cut(s) 120, 296, 336, 354, 406, 462
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 324, 458
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 3 cut(s) 91, 116, 154
Eco88I CYCGRG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 509
EcoT14I CCWWGG 2 cut(s) 324, 458
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 2 cut(s) 324, 458
Esp3I CGTCTC 1 cut(s) 285
FaiI YATR 4 cut(s) 278, 288, 377, 401
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 2 cut(s) 167, 227
FauI CCCGC 1 cut(s) 269
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 238, 281
FokI GGATG 2 cut(s) 82, 233
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 238, 281
GluI GCNGC 2 cut(s) 238, 281
GsuI CTGGAG 1 cut(s) 396
HgaI GACGC 2 cut(s) 229, 279
Hin1I GRCGYC 1 cut(s) 240
HinfI GANTC 4 cut(s) 38, 43, 125, 329
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 27, 120, 301
Hpy188III TCNNGA 6 cut(s) 80, 176, 185, 385, 413, 520
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 67, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 6 cut(s) 120, 296, 336, 354, 406, 462
Lsp1109I GCAGC 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 346
MalI GATC 6 cut(s) 122, 298, 338, 356, 408, 464
MboI GATC 6 cut(s) 120, 296, 336, 354, 406, 462
MboII GAAGA 2 cut(s) 364, 514
MflI RGATCY 4 cut(s) 296, 354, 406, 462
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 428, 433
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 147
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 511
MvaI CCWGG 1 cut(s) 511
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 6 cut(s) 120, 296, 336, 354, 406, 462
NlaIV GGNNCC 5 cut(s) 24, 78, 155, 298, 464
NmuCI GTSAC 1 cut(s) 346
NspV TTCGAA 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 38, 43, 329
PkrI GCNGC 2 cut(s) 239, 282
Ple19I CGATCG 1 cut(s) 123
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 509
PspN4I GGNNCC 5 cut(s) 24, 78, 155, 298, 464
PspPI GGNCC 3 cut(s) 91, 116, 154
PsuI RGATCY 4 cut(s) 296, 354, 406, 462
PvuI CGATCG 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 97
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 2 cut(s) 238, 281
Sau3AI GATC 6 cut(s) 120, 296, 336, 354, 406, 462
Sau96I GGNCC 3 cut(s) 91, 116, 154
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 511
SduI GDGCHC 1 cut(s) 324
SetI ASST 7 cut(s) 78, 93, 99, 118, 174, 306, 373
SfcI CTRYAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 3 cut(s) 91, 116, 154
Sse9I AATT 2 cut(s) 428, 433
SsiI CCGC 4 cut(s) 53, 237, 250, 262
StyD4I CCNGG 1 cut(s) 509
StyI CCWWGG 2 cut(s) 324, 458
TaqI TCGA 6 cut(s) 12, 41, 123, 186, 312, 493
TasI AATT 2 cut(s) 428, 433
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 3 cut(s) 38, 43, 329
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 86, 416
TspGWI ACGGA 2 cut(s) 282, 309
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 3 cut(s) 91, 116, 154
XapI RAATTY 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.