MD05G1036200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014414
Physical Location & Seq
Reverse (-)
5808350 .. 5810232
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1036200.v1.1.491

Sequence Viewer

Length: 567 bp
ATGGACGAGAAAGACGACAACAAAACCGGGGAAATCGAGGAAACGGGCCCAAAATCCGACGGGTCTTCTCCGAACCCGAATCCCAAAACTGCGAGGACGAAGGTTCCAGAAGTGGAAGTCTGCCTGTATCGACGGGGGAAAGGCCCGATCGACACGTTCAAGTCGGGTCTGGGGGGTTGGGACCAGAACCAGTTGGAGGTCGGAGACATTCTCGACAAGTATGGATTCAAATCGCTTTACGCTTTCAATACCGAATCGGGTCGCGGGGTTCCGATCCGGTTTAACCCTAGAAACGGCAGGTCTATGCTGCCGTATAGAGATGGAGCCACGGTTCAAATCGACGGAGAGCCTAAGGATTCCATGATCCAACCGGTGACGAAAATCTTGATTGGAGTAGCTTTTATGACCATCCTGATAACCTTGGTTTTGAGGGATCCTCCGCAATGGATCCAGAAATTAAACTTTACCGGAGGCAACTTCCCTCCATGGATCATCGCTCTCGTGATCATAGTATTTACTCGAATGAGGAAGAGAACCAGGGATTTGCTGAAAAAGTTTGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.19

Weight (kDa)

9.46

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71780
fragaria_vesca FvH4_2g12791
malus_domestica MD05G1036200.v1.1 MD10G1038300.v1.1
prunus_persica Prupe.8G044500_v2.0.a1 Prupe.8G044500_v2.0.a1
pyrus_communis pycom10g02630
rosa_chinensis RchiOBHm_Chr6g0273681
rosa_laevigata RLG00000013600
rosa_multiflora Rmu_sc0021426.1_g000002
rosa_roxburghii Rroxscaffold_7G00195130
rosa_rugosa Rorug06G0077200
rosa_samantha Rh6AG191500 Rh6BG195600 Rh6CG195100 Rh6DG186900
rosa_wichuraiana Rw6G016760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AccII CGCG 1 cut(s) 264
AciI CCGC 2 cut(s) 264, 440
AclWI GGATC 7 cut(s) 268, 358, 428, 441, 442, 455, 497
AfiI CCNNNNNNNGG 2 cut(s) 196, 293
AflIII ACRYGT 1 cut(s) 153
AgeI ACCGGT 1 cut(s) 370
AgsI TTSAA 4 cut(s) 160, 229, 247, 335
AjnI CCWGG 1 cut(s) 536
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 7 cut(s) 268, 358, 428, 441, 442, 455, 497
AoxI GGCC 2 cut(s) 46, 142
ApaI GGGCCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 307
AsiGI ACCGGT 1 cut(s) 370
AspS9I GGNCC 4 cut(s) 46, 47, 143, 181
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 181
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 50
BamHI GGATCC 2 cut(s) 433, 447
BanII GRGCYC 1 cut(s) 50
BauI CACGAG 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 294
BccI CCATC 2 cut(s) 314, 416
BceAI ACGGC 2 cut(s) 295, 310
BciT130I CCWGG 1 cut(s) 538
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 28, 538
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 4 cut(s) 46, 47, 143, 181
BmiI GGNNCC 7 cut(s) 48, 105, 182, 270, 325, 435, 449
BmrFI CCNGG 2 cut(s) 28, 538
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 4 cut(s) 195, 227, 421, 453
BpuMI CCSGG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 229
BsaJI CCNNGG 5 cut(s) 27, 327, 420, 485, 537
BsaWI WCCGGW 3 cut(s) 276, 370, 467
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 293
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 190
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 449
Bse8I GATNNNNATC 1 cut(s) 229
BseBI CCWGG 1 cut(s) 538
BseDI CCNNGG 5 cut(s) 27, 327, 420, 485, 537
BseGI GGATG 1 cut(s) 408
BseJI GATNNNNATC 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 196, 293
BseMI GCAATG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 48, 144
BshTI ACCGGT 1 cut(s) 370
BsiEI CGRYCG 1 cut(s) 150
BsiSI CCGG 4 cut(s) 27, 277, 371, 468
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 196, 293
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 48, 144
Bsp120I GGGCCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 7 cut(s) 147, 273, 363, 433, 447, 489, 504
Bsp19I CCATGG 1 cut(s) 485
BspACI CCGC 2 cut(s) 264, 440
BspANI GGCC 2 cut(s) 48, 144
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 7 cut(s) 48, 105, 182, 270, 325, 435, 449
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 7 cut(s) 268, 358, 428, 441, 442, 455, 497
BsrDI GCAATG 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 5 cut(s) 27, 327, 420, 485, 537
BssMI GATC 7 cut(s) 147, 273, 363, 433, 447, 489, 504
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 2 cut(s) 420, 485
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 524
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 2 cut(s) 327, 485
BstF5I GGATG 1 cut(s) 408
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 7 cut(s) 150, 276, 366, 436, 450, 492, 507
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 7 cut(s) 147, 273, 363, 433, 447, 489, 504
BstMCI CGRYCG 1 cut(s) 150
BstNI CCWGG 1 cut(s) 538
BstSCI CCNGG 2 cut(s) 26, 536
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 433, 447
BstYI RGATCY 2 cut(s) 433, 447
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 2 cut(s) 48, 144
BtgI CCRYGG 2 cut(s) 327, 485
BtgZI GCGATG 1 cut(s) 478
BtsCI GGATG 1 cut(s) 408
BveI ACCTGC 1 cut(s) 288
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 46, 47, 143, 181
CspAI ACCGGT 1 cut(s) 370
CviAII CATG 2 cut(s) 361, 486
CviJI RGCY 5 cut(s) 48, 144, 326, 349, 398
CviKI_1 RGCY 5 cut(s) 48, 144, 326, 349, 398
DdeI CTNAG 1 cut(s) 351
DpnI GATC 7 cut(s) 149, 275, 365, 435, 449, 491, 506
DpnII GATC 7 cut(s) 147, 273, 363, 433, 447, 489, 504
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 420, 485
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 181
Eco81I CCTNAGG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 536
EcoT14I CCWWGG 2 cut(s) 420, 485
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 2 cut(s) 420, 485
FaeI CATG 2 cut(s) 364, 489
FaiI YATR 7 cut(s) 222, 305, 315, 362, 404, 487, 509
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 360, 485
FauI CCCGC 1 cut(s) 257
FbaI TGATCA 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 1 cut(s) 288
GluI GCNGC 1 cut(s) 308
HaeIII GGCC 2 cut(s) 48, 144
HapII CCGG 4 cut(s) 27, 277, 371, 468
Hin1II CATG 2 cut(s) 364, 489
HinfI GANTC 4 cut(s) 79, 225, 254, 356
HpaII CCGG 4 cut(s) 27, 277, 371, 468
HphI GGTGA 1 cut(s) 385
Hpy188I TCNGA 4 cut(s) 58, 72, 203, 273
Hpy188III TCNNGA 6 cut(s) 107, 212, 385, 412, 451, 502
Hpy99I CGWCG 3 cut(s) 62, 135, 344
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 2 cut(s) 364, 489
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 7 cut(s) 147, 273, 363, 433, 447, 489, 504
LmnI GCTCC 1 cut(s) 323
Lsp1109I GCAGC 1 cut(s) 294
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 373
MalI GATC 7 cut(s) 149, 275, 365, 435, 449, 491, 506
MboI GATC 7 cut(s) 147, 273, 363, 433, 447, 489, 504
MboII GAAGA 2 cut(s) 57, 541
MflI RGATCY 2 cut(s) 433, 447
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 1 cut(s) 455
MmeI TCCRAC 4 cut(s) 81, 174, 181, 391
MnlI CCTC 8 cut(s) 31, 87, 190, 423, 447, 464, 492, 519
MseI TTAA 2 cut(s) 282, 458
MspI CCGG 4 cut(s) 27, 277, 371, 468
MspR9I CCNGG 2 cut(s) 28, 538
MvaI CCWGG 1 cut(s) 538
MvnI CGCG 1 cut(s) 264
NciI CCSGG 1 cut(s) 28
NcoI CCATGG 1 cut(s) 485
NdeII GATC 7 cut(s) 147, 273, 363, 433, 447, 489, 504
NlaIII CATG 2 cut(s) 364, 489
NlaIV GGNNCC 7 cut(s) 48, 105, 182, 270, 325, 435, 449
NmuCI GTSAC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfeI GAWTC 4 cut(s) 79, 225, 254, 356
PinAI ACCGGT 1 cut(s) 370
PkrI GCNGC 1 cut(s) 309
Ple19I CGATCG 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 536
PspGI CCWGG 1 cut(s) 536
PspN4I GGNNCC 7 cut(s) 48, 105, 182, 270, 325, 435, 449
PspOMI GGGCCC 1 cut(s) 46
PspPI GGNCC 4 cut(s) 46, 47, 143, 181
PsuI RGATCY 2 cut(s) 433, 447
PvuI CGATCG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 282, 458
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 7 cut(s) 147, 273, 363, 433, 447, 489, 504
Sau96I GGNCC 4 cut(s) 46, 47, 143, 181
ScrFI CCNGG 2 cut(s) 28, 538
SduI GDGCHC 1 cut(s) 50
SetI ASST 6 cut(s) 105, 158, 201, 302, 400, 422
SinI GGWCC 1 cut(s) 181
Sse9I AATT 1 cut(s) 455
SsiI CCGC 2 cut(s) 264, 440
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 26, 536
StyI CCWWGG 2 cut(s) 420, 485
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 158
TaqI TCGA 6 cut(s) 36, 130, 150, 213, 339, 520
TasI AATT 1 cut(s) 455
TfiI GAWTC 4 cut(s) 79, 225, 254, 356
Tru1I TTAA 2 cut(s) 282, 458
Tru9I TTAA 2 cut(s) 282, 458
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 373
TspGWI ACGGA 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 181
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.