Prupe.8G044500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014414
Physical Location & Seq
Reverse (-)
4603526 .. 4608805
5280 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G044500.2

Sequence Viewer

Length: 576 bp
ATGGACGACAAAGAAGATACCAACAGAGTCGGCGAAATCGAGGAATCGGACCCGAAATCCGACGGGTCATCCCGGAACCCGAATCCGAATCCTAAAACCGCGAGGACGAAGGTTCCGGAAGTGGAGGTCTACTTGTATCGGCGAGGCAAAGGCCCGATCGACACGTTCAGGACGAGCCTCGGGGGTTGGGACCAGAACCAGTTGGAGGTCCGAGACATTCTCGACAAGTACGGCTTCAAATCGCTTTACGCTTTCAATACCGGGTCGGGTCGCGGCGTTCCGATCCGGTTTAACCCCAGGAACGGCAGGTCTATGCTGGCTTATAAAGATGGATCTACGGTTCACATTGACGGAGAGCCCAAGGATTCCTTGATCCAACCAGTGACAAAAATCTTGCTTGGAGTAGCTGTTATAACCGTCTTGATAACCTTGGTTTTGAGAGATCCTCCACAGTGGGTCCAAAAATTGAACATTTCTGGCTTGAATTTTCCTCCTTGGATCATTGCTCTGGTGGTAATAGTTTTTACTCGGATGAGGAAGAGAACCGGAGATTTGCTGAAAAAGTATGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.56

Weight (kDa)

9.63

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71780
fragaria_vesca FvH4_2g12791
malus_domestica MD05G1036200.v1.1 MD10G1038300.v1.1
prunus_persica Prupe.8G044500_v2.0.a1 Prupe.8G044500_v2.0.a1
pyrus_communis pycom10g02630
rosa_chinensis RchiOBHm_Chr6g0273681
rosa_laevigata RLG00000013600
rosa_multiflora Rmu_sc0021426.1_g000002
rosa_roxburghii Rroxscaffold_7G00195130
rosa_rugosa Rorug06G0077200
rosa_samantha Rh6AG191500 Rh6BG195600 Rh6CG195100 Rh6DG186900
rosa_wichuraiana Rw6G016760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 324, 413
Acc36I ACCTGC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 101, 273
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 2 cut(s) 99, 273
AclWI GGATC 5 cut(s) 277, 340, 367, 437, 506
AcsI RAATTY 1 cut(s) 484
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 205, 302
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 4 cut(s) 238, 256, 469, 484
AjnI CCWGG 1 cut(s) 296
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 5 cut(s) 277, 340, 367, 437, 506
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 484
AspS9I GGNCC 5 cut(s) 49, 152, 190, 208, 457
AsuC2I CCSGG 2 cut(s) 73, 262
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 4 cut(s) 49, 190, 208, 457
BanII GRGCYC 1 cut(s) 360
BccI CCATC 1 cut(s) 323
BceAI ACGGC 2 cut(s) 247, 319
BciT130I CCWGG 1 cut(s) 298
BcnI CCSGG 2 cut(s) 73, 262
BcoDI GTCTC 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 297
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 3 cut(s) 73, 262, 298
Bme18I GGWCC 4 cut(s) 49, 190, 208, 457
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 5 cut(s) 49, 152, 190, 208, 457
BmiI GGNNCC 5 cut(s) 51, 77, 114, 191, 458
BmrFI CCNGG 3 cut(s) 73, 262, 298
BplI GAGNNNNNCTC 4 cut(s) 204, 236, 430, 462
BpuMI CCSGG 2 cut(s) 73, 262
BsaJI CCNNGG 5 cut(s) 178, 296, 360, 429, 494
BsaWI WCCGGW 3 cut(s) 115, 285, 545
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 302
Bse1I ACTGG 2 cut(s) 199, 380
Bse3DI GCAATG 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 5 cut(s) 178, 296, 360, 429, 494
BseGI GGATG 2 cut(s) 68, 537
BseLI CCNNNNNNNGG 2 cut(s) 205, 302
BseMI GCAATG 1 cut(s) 501
BseNI ACTGG 2 cut(s) 199, 380
Bsh1236I CGCG 2 cut(s) 101, 273
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 153
BsiEI CGRYCG 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 5 cut(s) 73, 116, 261, 286, 546
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 205, 302
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 360
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 6 cut(s) 156, 282, 332, 372, 442, 498
BspACI CCGC 2 cut(s) 99, 273
BspANI GGCC 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 115
BspFNI CGCG 2 cut(s) 101, 273
BspLI GGNNCC 5 cut(s) 51, 77, 114, 191, 458
BspMI ACCTGC 1 cut(s) 297
BspPI GGATC 5 cut(s) 277, 340, 367, 437, 506
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 2 cut(s) 199, 380
BssECI CCNNGG 5 cut(s) 178, 296, 360, 429, 494
BssMI GATC 6 cut(s) 156, 282, 332, 372, 442, 498
BssT1I CCWWGG 3 cut(s) 360, 429, 494
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 340, 418, 453
Bst6I CTCTTC 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 318
BstF5I GGATG 2 cut(s) 68, 537
BstFNI CGCG 2 cut(s) 101, 273
BstKTI GATC 6 cut(s) 159, 285, 335, 375, 445, 501
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 6 cut(s) 156, 282, 332, 372, 442, 498
BstMCI CGRYCG 1 cut(s) 159
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 71, 260, 296
BstUI CGCG 2 cut(s) 101, 273
BstX2I RGATCY 2 cut(s) 332, 442
BstYI RGATCY 2 cut(s) 332, 442
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 68, 537
BtsIMutI CAGTG 2 cut(s) 387, 458
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 318
Cfr13I GGNCC 5 cut(s) 49, 152, 190, 208, 457
Csp6I GTAC 1 cut(s) 229
CviJI RGCY 7 cut(s) 153, 177, 234, 320, 358, 407, 480
CviKI_1 RGCY 7 cut(s) 153, 177, 234, 320, 358, 407, 480
CviQI GTAC 1 cut(s) 229
DpnI GATC 6 cut(s) 158, 284, 334, 374, 444, 500
DpnII GATC 6 cut(s) 156, 282, 332, 372, 442, 498
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Eco130I CCWWGG 3 cut(s) 360, 429, 494
Eco24I GRGCYC 1 cut(s) 360
Eco47I GGWCC 4 cut(s) 49, 190, 208, 457
Eco88I CYCGRG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 296
EcoT14I CCWWGG 3 cut(s) 360, 429, 494
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 3 cut(s) 360, 429, 494
FaiI YATR 4 cut(s) 314, 324, 413, 567
FalI AAGNNNNNCTT 4 cut(s) 218, 250, 353, 385
FaqI GGGAC 1 cut(s) 203
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 2 cut(s) 55, 544
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 1 cut(s) 274
GluI GCNGC 1 cut(s) 274
HaeIII GGCC 1 cut(s) 153
HapII CCGG 5 cut(s) 73, 116, 261, 286, 546
HinfI GANTC 5 cut(s) 27, 44, 82, 88, 365
HpaII CCGG 5 cut(s) 73, 116, 261, 286, 546
Hpy166II GTNNAC 2 cut(s) 130, 343
Hpy188I TCNGA 6 cut(s) 49, 61, 87, 212, 282, 531
Hpy188III TCNNGA 4 cut(s) 116, 169, 221, 421
Hpy8I GTNNAC 2 cut(s) 130, 343
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 3 cut(s) 340, 418, 453
HpyCH4IV ACGT 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 164
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 6 cut(s) 156, 282, 332, 372, 442, 498
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 382
MalI GATC 6 cut(s) 158, 284, 334, 374, 444, 500
MboI GATC 6 cut(s) 156, 282, 332, 372, 442, 498
MboII GAAGA 2 cut(s) 26, 550
MflI RGATCY 2 cut(s) 332, 442
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 2 cut(s) 464, 484
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 3 cut(s) 84, 183, 400
MnlI CCTC 9 cut(s) 34, 96, 118, 137, 188, 199, 456, 501, 528
MroI TCCGGA 1 cut(s) 115
MseI TTAA 1 cut(s) 291
MspI CCGG 5 cut(s) 73, 116, 261, 286, 546
MspR9I CCNGG 3 cut(s) 73, 262, 298
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 2 cut(s) 101, 273
NciI CCSGG 2 cut(s) 73, 262
NdeII GATC 6 cut(s) 156, 282, 332, 372, 442, 498
NlaIV GGNNCC 5 cut(s) 51, 77, 114, 191, 458
NmuCI GTSAC 1 cut(s) 382
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 170
PfeI GAWTC 4 cut(s) 44, 82, 88, 365
PfoI TCCNGGA 1 cut(s) 71
PkrI GCNGC 1 cut(s) 275
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PsiI TTATAA 2 cut(s) 324, 413
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 5 cut(s) 51, 77, 114, 191, 458
PspPI GGNCC 5 cut(s) 49, 152, 190, 208, 457
PsuI RGATCY 2 cut(s) 332, 442
PvuI CGATCG 1 cut(s) 159
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 6 cut(s) 156, 282, 332, 372, 442, 498
Sau96I GGNCC 5 cut(s) 49, 152, 190, 208, 457
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 3 cut(s) 73, 262, 298
SduI GDGCHC 1 cut(s) 360
SetI ASST 7 cut(s) 114, 129, 167, 210, 311, 409, 431
SinI GGWCC 4 cut(s) 49, 190, 208, 457
Sse9I AATT 2 cut(s) 464, 484
SsiI CCGC 2 cut(s) 99, 273
StyD4I CCNGG 3 cut(s) 71, 260, 296
StyI CCWWGG 3 cut(s) 360, 429, 494
TaaI ACNGT 3 cut(s) 340, 418, 453
TaiI ACGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 39, 159, 222
TasI AATT 2 cut(s) 464, 484
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 4 cut(s) 44, 82, 88, 365
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 2 cut(s) 387, 458
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 2 cut(s) 387, 458
VpaK11BI GGWCC 4 cut(s) 49, 190, 208, 457
XapI RAATTY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.