Uncharacterized protein family UPF0004
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72090 |
| fragaria_vesca | FvH4_5g32030 |
| malus_domestica | MD08G1219300.v1.1 MD15G1407900.v1.1 |
| prunus_persica | Prupe.1G553700_v2.0.a1 |
| pyrus_communis | pycom08g19030 pycom15g36400 |
| rosa_chinensis | RchiOBHm_Chr7g0228031 |
| rosa_laevigata | RLG00000001594 |
| rosa_multiflora | Rmu_sc0004858.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00231640 |
| rosa_rugosa | Rorug07G0245400 |
| rosa_samantha | Rh7AG399200 Rh7CG417300 Rh7DG394700 |
| rosa_wichuraiana | Rw7G033180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 626 |
| AccBSI | CCGCTC | 1 cut(s) | 700 |
| AccI | GTMKAC | 3 cut(s) | 359, 927, 1023 |
| AciI | CCGC | 6 cut(s) | 407, 577, 700, 902, 1077, 1801 |
| AclWI | GGATC | 1 cut(s) | 135 |
| AcoI | YGGCCR | 2 cut(s) | 24, 978 |
| AcsI | RAATTY | 2 cut(s) | 597, 1332 |
| AcuI | CTGAAG | 3 cut(s) | 741, 1335, 1389 |
| AfaI | GTAC | 7 cut(s) | 328, 528, 634, 1209, 1365, 1668, 1683 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 987, 1178, 1179, 1277 |
| AflII | CTTAAG | 1 cut(s) | 512 |
| AgsI | TTSAA | 4 cut(s) | 70, 503, 892, 1121 |
| AjnI | CCWGG | 4 cut(s) | 181, 1045, 1084, 1177 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1380, 1412 |
| AleI | CACNNNNGTG | 1 cut(s) | 921 |
| Alw21I | GWGCWC | 1 cut(s) | 46 |
| Alw26I | GTCTC | 2 cut(s) | 1457, 1538 |
| Alw44I | GTGCAC | 1 cut(s) | 42 |
| AlwI | GGATC | 1 cut(s) | 135 |
| Ama87I | CYCGRG | 1 cut(s) | 1497 |
| AoxI | GGCC | 2 cut(s) | 24, 978 |
| ApaLI | GTGCAC | 1 cut(s) | 42 |
| ApeKI | GCWGC | 5 cut(s) | 747, 1190, 1513, 1692, 1798 |
| ApoI | RAATTY | 2 cut(s) | 597, 1332 |
| AseI | ATTAAT | 2 cut(s) | 84, 609 |
| AspLEI | GCGC | 2 cut(s) | 559, 1270 |
| AspS9I | GGNCC | 2 cut(s) | 1182, 1382 |
| AsuC2I | CCSGG | 3 cut(s) | 51, 293, 1686 |
| AsuHPI | GGTGA | 4 cut(s) | 715, 908, 1100, 1747 |
| AsuII | TTCGAA | 1 cut(s) | 143 |
| AvaI | CYCGRG | 1 cut(s) | 1497 |
| AvaII | GGWCC | 2 cut(s) | 1182, 1382 |
| AxyI | CCTNAGG | 1 cut(s) | 420 |
| BaeGI | GKGCMC | 1 cut(s) | 46 |
| BanI | GGYRCC | 1 cut(s) | 626 |
| BbsI | GAAGAC | 2 cut(s) | 98, 551 |
| Bbv12I | GWGCWC | 1 cut(s) | 46 |
| BbvI | GCAGC | 5 cut(s) | 759, 1202, 1500, 1704, 1785 |
| BccI | CCATC | 3 cut(s) | 175, 1322, 1431 |
| BceAI | ACGGC | 2 cut(s) | 993, 1221 |
| BciT130I | CCWGG | 4 cut(s) | 183, 1047, 1086, 1179 |
| BclI | TGATCA | 1 cut(s) | 832 |
| BcnI | CCSGG | 3 cut(s) | 51, 293, 1686 |
| BcoDI | GTCTC | 2 cut(s) | 1457, 1538 |
| BfaI | CTAG | 1 cut(s) | 342 |
| BfrI | CTTAAG | 1 cut(s) | 512 |
| BisI | GCNGC | 6 cut(s) | 748, 903, 1191, 1514, 1693, 1799 |
| BlsI | GCNGC | 6 cut(s) | 749, 904, 1192, 1515, 1694, 1800 |
| Bme1390I | CCNGG | 7 cut(s) | 51, 183, 293, 1047, 1086, 1179, 1686 |
| Bme18I | GGWCC | 2 cut(s) | 1182, 1382 |
| BmeT110I | CYCGRG | 1 cut(s) | 1497 |
| BmgT120I | GGNCC | 2 cut(s) | 1182, 1382 |
| BmiI | GGNNCC | 3 cut(s) | 628, 1183, 1184 |
| BmrFI | CCNGG | 7 cut(s) | 51, 183, 293, 1047, 1086, 1179, 1686 |
| BoxI | GACNNNNGTC | 2 cut(s) | 287, 1250 |
| BpiI | GAAGAC | 2 cut(s) | 98, 551 |
| BpmI | CTGGAG | 1 cut(s) | 780 |
| Bpu10I | CCTNAGC | 1 cut(s) | 848 |
| Bpu14I | TTCGAA | 1 cut(s) | 143 |
| BpuEI | CTTGAG | 1 cut(s) | 1131 |
| BpuMI | CCSGG | 3 cut(s) | 51, 293, 1686 |
| Bsa29I | ATCGAT | 1 cut(s) | 170 |
| BsaBI | GATNNNNATC | 1 cut(s) | 200 |
| BsaJI | CCNNGG | 2 cut(s) | 658, 1178 |
| BsaWI | WCCGGW | 2 cut(s) | 124, 1277 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 725, 755, 853, 883, 1728, 1758 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 987, 1178, 1179, 1277 |
| Bse1I | ACTGG | 4 cut(s) | 346, 450, 763, 1384 |
| Bse21I | CCTNAGG | 1 cut(s) | 420 |
| Bse3DI | GCAATG | 1 cut(s) | 1779 |
| Bse8I | GATNNNNATC | 1 cut(s) | 200 |
| BseBI | CCWGG | 4 cut(s) | 183, 1047, 1086, 1179 |
| BseCI | ATCGAT | 1 cut(s) | 170 |
| BseDI | CCNNGG | 2 cut(s) | 658, 1178 |
| BseGI | GGATG | 3 cut(s) | 221, 416, 864 |
| BseJI | GATNNNNATC | 1 cut(s) | 200 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 987, 1178, 1179, 1277 |
| BseMI | GCAATG | 1 cut(s) | 1779 |
| BseMII | CTCAG | 6 cut(s) | 203, 434, 1124, 1175, 1554, 1632 |
| BseNI | ACTGG | 4 cut(s) | 346, 450, 763, 1384 |
| BseRI | GAGGAG | 1 cut(s) | 45 |
| BseSI | GKGCMC | 1 cut(s) | 46 |
| BseXI | GCAGC | 5 cut(s) | 759, 1202, 1500, 1704, 1785 |
| BseYI | CCCAGC | 1 cut(s) | 1186 |
| BsgI | GTGCAG | 1 cut(s) | 1309 |
| BshFI | GGCC | 2 cut(s) | 26, 980 |
| BshNI | GGYRCC | 1 cut(s) | 626 |
| BshVI | ATCGAT | 1 cut(s) | 170 |
| BsiHKAI | GWGCWC | 1 cut(s) | 46 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1497 |
| BsiSI | CCGG | 6 cut(s) | 27, 50, 125, 293, 1278, 1685 |
| BslFI | GGGAC | 5 cut(s) | 275, 322, 929, 1195, 1414 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 987, 1178, 1179, 1277 |
| BsmAI | GTCTC | 2 cut(s) | 1457, 1538 |
| BsmFI | GGGAC | 5 cut(s) | 275, 322, 929, 1195, 1414 |
| BsmI | GAATGC | 2 cut(s) | 76, 1056 |
| BsnI | GGCC | 2 cut(s) | 26, 980 |
| BsoBI | CYCGRG | 1 cut(s) | 1497 |
| Bsp119I | TTCGAA | 1 cut(s) | 143 |
| Bsp1286I | GDGCHC | 1 cut(s) | 46 |
| Bsp1407I | TGTACA | 1 cut(s) | 1363 |
| Bsp143I | GATC | 6 cut(s) | 127, 433, 481, 562, 832, 1583 |
| BspACI | CCGC | 6 cut(s) | 407, 577, 700, 902, 1077, 1801 |
| BspANI | GGCC | 2 cut(s) | 26, 980 |
| BspCNI | CTCAG | 6 cut(s) | 202, 433, 1123, 1174, 1555, 1631 |
| BspDI | ATCGAT | 1 cut(s) | 170 |
| BspHI | TCATGA | 1 cut(s) | 520 |
| BspLI | GGNNCC | 3 cut(s) | 628, 1183, 1184 |
| BspPI | GGATC | 1 cut(s) | 135 |
| BspT104I | TTCGAA | 1 cut(s) | 143 |
| BspT107I | GGYRCC | 1 cut(s) | 626 |
| BspTI | CTTAAG | 1 cut(s) | 512 |
| BsrBI | CCGCTC | 1 cut(s) | 700 |
| BsrDI | GCAATG | 1 cut(s) | 1779 |
| BsrGI | TGTACA | 1 cut(s) | 1363 |
| BsrI | ACTGG | 4 cut(s) | 346, 450, 763, 1384 |
| BssECI | CCNNGG | 2 cut(s) | 658, 1178 |
| BssMI | GATC | 6 cut(s) | 127, 433, 481, 562, 832, 1583 |
| Bst2UI | CCWGG | 4 cut(s) | 183, 1047, 1086, 1179 |
| Bst4CI | ACNGT | 6 cut(s) | 331, 531, 682, 712, 1018, 1117 |
| Bst6I | CTCTTC | 3 cut(s) | 1290, 1572, 1650 |
| BstAFI | CTTAAG | 1 cut(s) | 512 |
| BstAUI | TGTACA | 1 cut(s) | 1363 |
| BstBI | TTCGAA | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 3 cut(s) | 159, 555, 654 |
| BstDEI | CTNAG | 8 cut(s) | 189, 420, 848, 1110, 1161, 1372, 1563, 1618 |
| BstDSI | CCRYGG | 1 cut(s) | 658 |
| BstF5I | GGATG | 3 cut(s) | 221, 416, 864 |
| BstHHI | GCGC | 2 cut(s) | 559, 1270 |
| BstKTI | GATC | 6 cut(s) | 130, 436, 484, 565, 835, 1586 |
| BstMAI | GTCTC | 2 cut(s) | 1457, 1538 |
| BstMBI | GATC | 6 cut(s) | 127, 433, 481, 562, 832, 1583 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1051 |
| BstNI | CCWGG | 4 cut(s) | 183, 1047, 1086, 1179 |
| BstNSI | RCATGY | 2 cut(s) | 656, 1788 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 287, 1250 |
| BstSCI | CCNGG | 7 cut(s) | 49, 181, 291, 1045, 1084, 1177, 1684 |
| BstSLI | GKGCMC | 1 cut(s) | 46 |
| BstV1I | GCAGC | 5 cut(s) | 759, 1202, 1500, 1704, 1785 |
| BstV2I | GAAGAC | 2 cut(s) | 98, 551 |
| Bsu15I | ATCGAT | 1 cut(s) | 170 |
| Bsu36I | CCTNAGG | 1 cut(s) | 420 |
| BsuRI | GGCC | 2 cut(s) | 26, 980 |
| BsuTUI | ATCGAT | 1 cut(s) | 170 |
| BtgI | CCRYGG | 1 cut(s) | 658 |
| BtgZI | GCGATG | 1 cut(s) | 368 |
| BtsCI | GGATG | 3 cut(s) | 221, 416, 864 |
| BtsI | GCAGTG | 1 cut(s) | 912 |
| BtsIMutI | CAGTG | 2 cut(s) | 756, 912 |
| Cac8I | GCNNGC | 3 cut(s) | 159, 555, 654 |
| CciI | TCATGA | 1 cut(s) | 520 |
| CfoI | GCGC | 2 cut(s) | 559, 1270 |
| Cfr13I | GGNCC | 2 cut(s) | 1182, 1382 |
| ClaI | ATCGAT | 1 cut(s) | 170 |
| Csp6I | GTAC | 7 cut(s) | 327, 527, 633, 1208, 1364, 1667, 1682 |
| CviAII | CATG | 6 cut(s) | 521, 653, 921, 941, 982, 1785 |
| CviQI | GTAC | 7 cut(s) | 327, 527, 633, 1208, 1364, 1667, 1682 |
| DdeI | CTNAG | 8 cut(s) | 189, 420, 848, 1110, 1161, 1372, 1563, 1618 |
| DpnI | GATC | 6 cut(s) | 129, 435, 483, 564, 834, 1585 |
| DpnII | GATC | 6 cut(s) | 127, 433, 481, 562, 832, 1583 |
| EaeI | YGGCCR | 2 cut(s) | 24, 978 |
| Eam1104I | CTCTTC | 3 cut(s) | 1290, 1572, 1650 |
| EarI | CTCTTC | 3 cut(s) | 1290, 1572, 1650 |
| Eco32I | GATATC | 1 cut(s) | 10 |
| Eco47I | GGWCC | 2 cut(s) | 1182, 1382 |
| Eco57I | CTGAAG | 3 cut(s) | 741, 1335, 1389 |
| Eco81I | CCTNAGG | 1 cut(s) | 420 |
| Eco88I | CYCGRG | 1 cut(s) | 1497 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1182 |
| EcoRI | GAATTC | 1 cut(s) | 1332 |
| EcoRII | CCWGG | 4 cut(s) | 181, 1045, 1084, 1177 |
| EcoRV | GATATC | 1 cut(s) | 10 |
| FaeI | CATG | 6 cut(s) | 524, 656, 924, 944, 985, 1788 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 495, 527 |
| FaqI | GGGAC | 5 cut(s) | 275, 322, 929, 1195, 1414 |
| FatI | CATG | 6 cut(s) | 520, 652, 920, 940, 981, 1784 |
| FauI | CCCGC | 2 cut(s) | 400, 693 |
| FauNDI | CATATG | 1 cut(s) | 766 |
| FbaI | TGATCA | 1 cut(s) | 832 |
| FblI | GTMKAC | 3 cut(s) | 359, 927, 1023 |
| Fnu4HI | GCNGC | 6 cut(s) | 748, 903, 1191, 1514, 1693, 1799 |
| FokI | GGATG | 3 cut(s) | 228, 423, 871 |
| Fsp4HI | GCNGC | 6 cut(s) | 748, 903, 1191, 1514, 1693, 1799 |
| FspBI | CTAG | 1 cut(s) | 342 |
| GlaI | GCGC | 2 cut(s) | 558, 1269 |
| GluI | GCNGC | 6 cut(s) | 748, 903, 1191, 1514, 1693, 1799 |
| GsaI | CCCAGC | 1 cut(s) | 1190 |
| GsuI | CTGGAG | 1 cut(s) | 780 |
| HaeIII | GGCC | 2 cut(s) | 26, 980 |
| HapII | CCGG | 6 cut(s) | 27, 50, 125, 293, 1278, 1685 |
| HhaI | GCGC | 2 cut(s) | 559, 1270 |
| Hin1II | CATG | 6 cut(s) | 524, 656, 924, 944, 985, 1788 |
| Hin6I | GCGC | 2 cut(s) | 557, 1268 |
| HinP1I | GCGC | 2 cut(s) | 557, 1268 |
| HincII | GTYRAC | 2 cut(s) | 282, 975 |
| HindII | GTYRAC | 2 cut(s) | 282, 975 |
| HinfI | GANTC | 9 cut(s) | 33, 54, 145, 152, 178, 468, 538, 726, 965 |
| HpaII | CCGG | 6 cut(s) | 27, 50, 125, 293, 1278, 1685 |
| HphI | GGTGA | 4 cut(s) | 715, 908, 1100, 1747 |
| Hpy166II | GTNNAC | 6 cut(s) | 44, 282, 360, 928, 975, 1024 |
| Hpy188I | TCNGA | 9 cut(s) | 59, 80, 90, 192, 231, 543, 721, 832, 1113 |
| Hpy8I | GTNNAC | 6 cut(s) | 44, 282, 360, 928, 975, 1024 |
| Hpy99I | CGWCG | 2 cut(s) | 1528, 1682 |
| HpyAV | CCTTC | 6 cut(s) | 443, 716, 837, 1198, 1348, 1654 |
| HpyCH4III | ACNGT | 6 cut(s) | 331, 531, 682, 712, 1018, 1117 |
| HpyCH4IV | ACGT | 3 cut(s) | 109, 209, 913 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1051 |
| HpyF3I | CTNAG | 8 cut(s) | 189, 420, 848, 1110, 1161, 1372, 1563, 1618 |
| HpySE526I | ACGT | 3 cut(s) | 109, 209, 913 |
| Hsp92II | CATG | 6 cut(s) | 524, 656, 924, 944, 985, 1788 |
| HspAI | GCGC | 2 cut(s) | 557, 1268 |
| KflI | GGGWCCC | 1 cut(s) | 1182 |
| Ksp22I | TGATCA | 1 cut(s) | 832 |
| Kzo9I | GATC | 6 cut(s) | 127, 433, 481, 562, 832, 1583 |
| LmnI | GCTCC | 3 cut(s) | 166, 697, 761 |
| Lsp1109I | GCAGC | 5 cut(s) | 759, 1202, 1500, 1704, 1785 |
| MaeI | CTAG | 1 cut(s) | 342 |
| MaeII | ACGT | 3 cut(s) | 109, 209, 913 |
| MaeIII | GTNAC | 8 cut(s) | 149, 674, 773, 909, 914, 1375, 1598, 1753 |
| MalI | GATC | 6 cut(s) | 129, 435, 483, 564, 834, 1585 |
| MbiI | CCGCTC | 1 cut(s) | 700 |
| MboI | GATC | 6 cut(s) | 127, 433, 481, 562, 832, 1583 |
| MhlI | GDGCHC | 1 cut(s) | 46 |
| MluCI | AATT | 8 cut(s) | 81, 132, 586, 597, 1056, 1241, 1332, 1702 |
| MlyI | GAGTC | 5 cut(s) | 42, 146, 477, 532, 735 |
| MmeI | TCCRAC | 4 cut(s) | 58, 445, 496, 1324 |
| MslI | CAYNNNNRTG | 3 cut(s) | 657, 921, 1280 |
| MspCI | CTTAAG | 1 cut(s) | 512 |
| MspI | CCGG | 6 cut(s) | 27, 50, 125, 293, 1278, 1685 |
| MspR9I | CCNGG | 7 cut(s) | 51, 183, 293, 1047, 1086, 1179, 1686 |
| Mva1269I | GAATGC | 2 cut(s) | 76, 1056 |
| MvaI | CCWGG | 4 cut(s) | 183, 1047, 1086, 1179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1051 |
| NciI | CCSGG | 3 cut(s) | 51, 293, 1686 |
| NdeI | CATATG | 1 cut(s) | 766 |
| NdeII | GATC | 6 cut(s) | 127, 433, 481, 562, 832, 1583 |
| NlaIII | CATG | 6 cut(s) | 524, 656, 924, 944, 985, 1788 |
| NlaIV | GGNNCC | 3 cut(s) | 628, 1183, 1184 |
| NmuCI | GTSAC | 4 cut(s) | 149, 773, 914, 1753 |
| NspI | RCATGY | 2 cut(s) | 656, 1788 |
| NspV | TTCGAA | 1 cut(s) | 143 |
| OliI | CACNNNNGTG | 1 cut(s) | 921 |
| PaeI | GCATGC | 1 cut(s) | 656 |
| PagI | TCATGA | 1 cut(s) | 520 |
| PctI | GAATGC | 2 cut(s) | 76, 1056 |
| PfeI | GAWTC | 4 cut(s) | 54, 145, 178, 965 |
| PfoI | TCCNGGA | 2 cut(s) | 181, 291 |
| PkrI | GCNGC | 6 cut(s) | 749, 904, 1192, 1515, 1694, 1800 |
| PleI | GAGTC | 5 cut(s) | 41, 146, 476, 532, 734 |
| PpsI | GAGTC | 5 cut(s) | 41, 146, 476, 532, 734 |
| PpuMI | RGGWCCY | 1 cut(s) | 1182 |
| PshAI | GACNNNNGTC | 2 cut(s) | 287, 1250 |
| PshBI | ATTAAT | 2 cut(s) | 84, 609 |
| Psp5II | RGGWCCY | 1 cut(s) | 1182 |
| Psp6I | CCWGG | 4 cut(s) | 181, 1045, 1084, 1177 |
| PspFI | CCCAGC | 1 cut(s) | 1186 |
| PspGI | CCWGG | 4 cut(s) | 181, 1045, 1084, 1177 |
| PspN4I | GGNNCC | 3 cut(s) | 628, 1183, 1184 |
| PspPI | GGNCC | 2 cut(s) | 1182, 1382 |
| PspPPI | RGGWCCY | 1 cut(s) | 1182 |
| RsaI | GTAC | 7 cut(s) | 328, 528, 634, 1209, 1365, 1668, 1683 |
| RsaNI | GTAC | 7 cut(s) | 327, 527, 633, 1208, 1364, 1667, 1682 |
| RseI | CAYNNNNRTG | 3 cut(s) | 657, 921, 1280 |
| SatI | GCNGC | 6 cut(s) | 748, 903, 1191, 1514, 1693, 1799 |
| Sau3AI | GATC | 6 cut(s) | 127, 433, 481, 562, 832, 1583 |
| Sau96I | GGNCC | 2 cut(s) | 1182, 1382 |
| SchI | GAGTC | 5 cut(s) | 42, 146, 477, 532, 735 |
| ScrFI | CCNGG | 7 cut(s) | 51, 183, 293, 1047, 1086, 1179, 1686 |
| SduI | GDGCHC | 1 cut(s) | 46 |
| SfuI | TTCGAA | 1 cut(s) | 143 |
| SinI | GGWCC | 2 cut(s) | 1182, 1382 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 657, 921, 1280 |
| SmlI | CTYRAG | 2 cut(s) | 512, 1146 |
| SmoI | CTYRAG | 2 cut(s) | 512, 1146 |
| SphI | GCATGC | 1 cut(s) | 656 |
| Sse9I | AATT | 8 cut(s) | 81, 132, 586, 597, 1056, 1241, 1332, 1702 |
| SsiI | CCGC | 6 cut(s) | 407, 577, 700, 902, 1077, 1801 |
| SspMI | CTAG | 1 cut(s) | 342 |
| StyD4I | CCNGG | 7 cut(s) | 49, 181, 291, 1045, 1084, 1177, 1684 |
| TaaI | ACNGT | 6 cut(s) | 331, 531, 682, 712, 1018, 1117 |
| TaiI | ACGT | 3 cut(s) | 112, 212, 916 |
| TaqI | TCGA | 6 cut(s) | 12, 119, 143, 170, 594, 1526 |
| TasI | AATT | 8 cut(s) | 81, 132, 586, 597, 1056, 1241, 1332, 1702 |
| TatI | WGTACW | 3 cut(s) | 326, 632, 1363 |
| TauI | GCSGC | 1 cut(s) | 905 |
| TfiI | GAWTC | 4 cut(s) | 54, 145, 178, 965 |
| TscAI | CASTG | 2 cut(s) | 763, 912 |
| TseFI | GTSAC | 4 cut(s) | 149, 773, 914, 1753 |
| TseI | GCWGC | 5 cut(s) | 747, 1190, 1513, 1692, 1798 |
| Tsp45I | GTSAC | 4 cut(s) | 149, 773, 914, 1753 |
| TspDTI | ATGAA | 9 cut(s) | 188, 537, 929, 998, 1113, 1142, 1214, 1325, 1702 |
| TspRI | CASTG | 2 cut(s) | 763, 912 |
| Vha464I | CTTAAG | 1 cut(s) | 512 |
| VneI | GTGCAC | 1 cut(s) | 42 |
| VpaK11BI | GGWCC | 2 cut(s) | 1182, 1382 |
| VspI | ATTAAT | 2 cut(s) | 84, 609 |
| XapI | RAATTY | 2 cut(s) | 597, 1332 |
| XceI | RCATGY | 2 cut(s) | 656, 1788 |
| XmiI | GTMKAC | 3 cut(s) | 359, 927, 1023 |
| XspI | CTAG | 1 cut(s) | 342 |