Rmu_sc0004858.1_g000015

Threonylcarbamoyladenosine tRNA

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004858.1
Physical Location & Seq
Forward (+)
72312 .. 81723
9412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004858.1_g000015.1.cds

Sequence Viewer

Length: 1986 bp
atggaggacattgaggatttgttcattggtggcggaggagctcctcccggtttccgcttgccgattacatccgtcggactcaatccaaagaagaagaagaaacccgatctcaatggcaacctctctcaaatcaaacacccactcgctcctctctcccctaaagtccctggcactcagggtttccgcttgccgattacatccgtcggactcaatccaaagaagaagaagaaacccgatctcaatggcaacctttctcaaatcaaacacccactcgctcctctctcccctaaagtccctggcactcagactatatatatcaagacatttggatgctcccacaaccagagtgacagcgaatatatggctggtcaactttcagcttttggttattcgttaagtgacgatcctgaggatgcagacctatggctcataaatacatgcacagttaaatctccaagccaatctgccatggacactctgatagcaaaaggcaaaggtgcgaaaaagcccctggtggtagctgggtgtgtgcctcaaggaagtcgagatataaaggagctagatggtgtcagtatagtaggagtccagcaaattgaccgtgtggttgaaattgttgaagaaactttgaaaggtcacgaggtgcggcttttaagccgtaagacattgccagcactggacctccctaaggtgagaaaaaacaagttcgttgagattcttcccattaatgttggctgtttaggtgcttgcacatactgcaaaacaaagcatgcccgtggtcatttagggagttacactgttgatggacttgtggggcgtgtaaaatctgtgatagctgttggagtgagggaaatatggttgagcagtgaagatactggagcatatggtcgtgacattggggtcaatctacctattttattgaatgcaattgtcaaggagcttcctcctgatgcaagcacaatgcttcgaattggaatgacgaatccccctttcattctagagcacttgaaagaaattgcagaggtgttgcggcatccatgtgtatactcatttcttcatgtaccagtccaatctggaagtgatgccgtcttgactgcaatgaatcgagaatatacagtgagtgagttcaagactgttgtagatactttaactgagcttgtgccagggatgcagattgcaactgatataatttgtggatttcccggtgaaacggatgaagattttgctcaaactcgtgaccttatcaaggagtacaagtttcctcaagttcatatttcacagttctatcctcgacctggaacacctgctgcaaggatgaaaaaggtccccagtactgtagtgaagaataggagtcgtgaattaacttctgtttttgaagctttcaccccgtatgttggaatggaaggcagggtggaaaggatttggataacagaagttgccactgatggtactcacttggtgcttgtagctggtccagaaagtatgctgggaacttcagctattgtgaagataacgtcagttggaaggtggtcggtatttggagaagtaattgagactatccctgaatcaaatgataaagcagctgtgggaaaagaaaggcagagtcaggagaattgtttcccctgctcgaacaattttgagacttgtgcttgttcaacagagcctgaaacttgtgcttgtggaccagaaagttgtggagaacaggctactttgacaaaatgttctgtaacaactactggcgttccacttgaagatcagaacaacagaaatctgattggatggttactaaggaagagaaagaaccaagttcagaaattcgtggagaatgaaattgacttgggattaaagaaaaagcaagagcagacccaagaaagcattggtaaatggggtgttgtagataaggctcttctaggtgggatgtttgcgagcttcctgactattgtagctgtactagtacatcttggatttagaattatgtcatcgaagtag

Protein Analysis

661

Amino Acids

72.03

Weight (kDa)

8.33

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72090
fragaria_vesca FvH4_5g32030
malus_domestica MD08G1219300.v1.1 MD15G1407900.v1.1
prunus_persica Prupe.1G553700_v2.0.a1
pyrus_communis pycom08g19030 pycom15g36400
rosa_chinensis RchiOBHm_Chr7g0228031
rosa_laevigata RLG00000001594
rosa_multiflora Rmu_sc0004858.1_g000015
rosa_roxburghii Rroxscaffold_3G00231640
rosa_rugosa Rorug07G0245400
rosa_samantha Rh7AG399200 Rh7CG417300 Rh7DG394700
rosa_wichuraiana Rw7G033180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1309
AasI GACNNNNNNGTC 1 cut(s) 896
Acc36I ACCTGC 1 cut(s) 1309
AccI GTMKAC 1 cut(s) 1041
AciI CCGC 5 cut(s) 33, 55, 184, 643, 1027
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 1 cut(s) 1811
AcuI CTGAAG 1 cut(s) 1476
AdeI CACNNNGTG 2 cut(s) 640, 1456
AfaI GTAC 6 cut(s) 1059, 1250, 1330, 1447, 1947, 1953
AfiI CCNNNNNNNGG 4 cut(s) 685, 1243, 1292, 1391
AgsI TTSAA 9 cut(s) 608, 617, 628, 919, 1006, 1126, 1373, 1653, 1748
AhlI ACTAGT 1 cut(s) 1948
AjnI CCWGG 5 cut(s) 166, 295, 510, 1159, 1291
Alw21I GWGCWC 2 cut(s) 43, 1002
Alw26I GTCTC 2 cut(s) 1544, 1631
AlwI GGATC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 1661
ApeKI GCWGC 2 cut(s) 1304, 1577
ApoI RAATTY 1 cut(s) 1811
AseI ATTAAT 1 cut(s) 723
Asp700I GAANNNNTTC 1 cut(s) 1613
AspS9I GGNCC 4 cut(s) 676, 1321, 1469, 1679
AsuC2I CCSGG 2 cut(s) 48, 1200
AsuHPI GGTGA 3 cut(s) 700, 1214, 1372
AsuII TTCGAA 1 cut(s) 964
AvaII GGWCC 4 cut(s) 676, 1321, 1469, 1679
AxyI CCTNAGG 2 cut(s) 408, 684
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 2 cut(s) 635, 1230
Bbv12I GWGCWC 2 cut(s) 43, 1002
BbvI GCAGC 2 cut(s) 1291, 1589
BccI CCATC 4 cut(s) 557, 794, 1436, 1770
BceAI ACGGC 2 cut(s) 639, 1067
BciT130I CCWGG 5 cut(s) 168, 297, 512, 1161, 1293
BcnI CCSGG 2 cut(s) 48, 1200
BcoDI GTCTC 2 cut(s) 1544, 1631
BcuI ACTAGT 1 cut(s) 1948
BfaI CTAG 4 cut(s) 560, 995, 1907, 1949
BfmI CTRYAG 1 cut(s) 1332
BfuAI ACCTGC 1 cut(s) 1309
BisI GCNGC 4 cut(s) 644, 1028, 1305, 1578
BlsI GCNGC 4 cut(s) 645, 1029, 1306, 1579
BmcAI AGTACT 1 cut(s) 1330
Bme1390I CCNGG 7 cut(s) 48, 168, 297, 512, 1161, 1200, 1293
Bme18I GGWCC 4 cut(s) 676, 1321, 1469, 1679
BmgT120I GGNCC 4 cut(s) 676, 1321, 1469, 1679
BmiI GGNNCC 1 cut(s) 1323
BmrFI CCNGG 7 cut(s) 48, 168, 297, 512, 1161, 1200, 1293
BmrI ACTGGG 1 cut(s) 1320
BmsI GCATC 6 cut(s) 320, 403, 937, 1039, 1069, 1155
BmuI ACTGGG 1 cut(s) 1320
BpmI CTGGAG 1 cut(s) 894
Bpu14I TTCGAA 1 cut(s) 964
BpuEI CTTGAG 2 cut(s) 519, 1245
BpuMI CCSGG 2 cut(s) 48, 1200
BsaJI CCNNGG 6 cut(s) 166, 295, 468, 510, 772, 1160
BsaXI ACNNNNNCTCC 4 cut(s) 663, 693, 1238, 1268
Bsc4I CCNNNNNNNGG 4 cut(s) 685, 1243, 1292, 1391
Bse1I ACTGG 5 cut(s) 678, 877, 1061, 1326, 1738
Bse21I CCTNAGG 2 cut(s) 408, 684
Bse3DI GCAATG 2 cut(s) 662, 1101
BseBI CCWGG 5 cut(s) 168, 297, 512, 1161, 1293
BseDI CCNNGG 6 cut(s) 166, 295, 468, 510, 772, 1160
BseLI CCNNNNNNNGG 4 cut(s) 685, 1243, 1292, 1391
BseMI GCAATG 2 cut(s) 662, 1101
BseMII CTCAG 4 cut(s) 188, 317, 399, 1140
BseNI ACTGG 5 cut(s) 678, 877, 1061, 1326, 1738
BseRI GAGGAG 4 cut(s) 33, 51, 138, 267
BseXI GCAGC 2 cut(s) 1291, 1589
BseYI CCCAGC 2 cut(s) 521, 1483
BsiHKAI GWGCWC 2 cut(s) 43, 1002
BsiSI CCGG 2 cut(s) 48, 1200
BslFI GGGAC 3 cut(s) 149, 278, 1307
BslI CCNNNNNNNGG 4 cut(s) 685, 1243, 1292, 1391
BsmAI GTCTC 2 cut(s) 1544, 1631
BsmFI GGGAC 3 cut(s) 149, 278, 1307
BsmI GAATGC 1 cut(s) 925
Bsp119I TTCGAA 1 cut(s) 964
Bsp1286I GDGCHC 2 cut(s) 43, 1002
Bsp143I GATC 4 cut(s) 106, 235, 403, 1750
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 5 cut(s) 33, 55, 184, 643, 1027
BspCNI CTCAG 4 cut(s) 187, 316, 400, 1141
BspLI GGNNCC 1 cut(s) 1323
BspMI ACCTGC 1 cut(s) 1309
BspPI GGATC 1 cut(s) 398
BspQI GCTCTTC 1 cut(s) 1908
BspT104I TTCGAA 1 cut(s) 964
BsrDI GCAATG 2 cut(s) 662, 1101
BsrI ACTGG 5 cut(s) 678, 877, 1061, 1326, 1738
BssECI CCNNGG 6 cut(s) 166, 295, 468, 510, 772, 1160
BssMI GATC 4 cut(s) 106, 235, 403, 1750
BssNAI GTATAC 1 cut(s) 1042
BssSI CACGAG 2 cut(s) 635, 1230
BssT1I CCWWGG 1 cut(s) 468
Bst1107I GTATAC 1 cut(s) 1042
Bst2BI CACGAG 2 cut(s) 635, 1230
Bst2UI CCWGG 5 cut(s) 168, 297, 512, 1161, 1293
Bst4CI ACNGT 7 cut(s) 445, 599, 796, 1114, 1132, 1278, 1333
Bst6I CTCTTC 2 cut(s) 1784, 1908
BstAPI GCANNNNNTGC 1 cut(s) 753
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 7 cut(s) 59, 188, 669, 745, 768, 952, 1924
BstDEI CTNAG 6 cut(s) 174, 303, 408, 684, 1149, 1784
BstDSI CCRYGG 2 cut(s) 468, 772
BstENI CCTNNNNNAGG 2 cut(s) 683, 1241
BstKTI GATC 4 cut(s) 109, 238, 406, 1753
BstMAI GTCTC 2 cut(s) 1544, 1631
BstMBI GATC 4 cut(s) 106, 235, 403, 1750
BstMWI GCNNNNNNNGC 2 cut(s) 753, 1165
BstNI CCWGG 5 cut(s) 168, 297, 512, 1161, 1293
BstNSI RCATGY 2 cut(s) 441, 770
BstSCI CCNGG 7 cut(s) 46, 166, 295, 510, 1159, 1198, 1291
BstSFI CTRYAG 1 cut(s) 1332
BstV1I GCAGC 2 cut(s) 1291, 1589
BstZ17I GTATAC 1 cut(s) 1042
Bsu36I CCTNAGG 2 cut(s) 408, 684
BtgI CCRYGG 2 cut(s) 468, 772
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 5 cut(s) 671, 792, 868, 1119, 1437
BveI ACCTGC 1 cut(s) 1309
Cac8I GCNNGC 7 cut(s) 59, 188, 669, 745, 768, 952, 1924
CaiI CAGNNNCTG 1 cut(s) 1661
Cfr13I GGNCC 4 cut(s) 676, 1321, 1469, 1679
Csp6I GTAC 6 cut(s) 1058, 1249, 1329, 1446, 1946, 1952
CviAII CATG 5 cut(s) 438, 469, 767, 1035, 1055
CviQI GTAC 6 cut(s) 1058, 1249, 1329, 1446, 1946, 1952
DdeI CTNAG 6 cut(s) 174, 303, 408, 684, 1149, 1784
DpnI GATC 4 cut(s) 108, 237, 405, 1752
DpnII GATC 4 cut(s) 106, 235, 403, 1750
DraIII CACNNNGTG 2 cut(s) 640, 1456
DrdI GACNNNNNNGTC 1 cut(s) 896
DseDI GACNNNNNNGTC 1 cut(s) 896
Eam1104I CTCTTC 2 cut(s) 1784, 1908
EarI CTCTTC 2 cut(s) 1784, 1908
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 4 cut(s) 676, 1321, 1469, 1679
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 1476
Eco81I CCTNAGG 2 cut(s) 408, 684
EcoICRI GAGCTC 1 cut(s) 41
EcoNI CCTNNNNNAGG 2 cut(s) 683, 1241
EcoO109I RGGNCCY 1 cut(s) 1321
EcoRII CCWGG 5 cut(s) 166, 295, 510, 1159, 1291
EcoT14I CCWWGG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 5 cut(s) 441, 472, 770, 1038, 1058
FaqI GGGAC 3 cut(s) 149, 278, 1307
FatI CATG 5 cut(s) 437, 468, 766, 1034, 1054
FauNDI CATATG 1 cut(s) 880
FblI GTMKAC 1 cut(s) 1041
Fnu4HI GCNGC 4 cut(s) 644, 1028, 1305, 1578
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 4 cut(s) 644, 1028, 1305, 1578
FspBI CTAG 4 cut(s) 560, 995, 1907, 1949
GluI GCNGC 4 cut(s) 644, 1028, 1305, 1578
GsaI CCCAGC 2 cut(s) 525, 1487
GsuI CTGGAG 1 cut(s) 894
HapII CCGG 2 cut(s) 48, 1200
Hin1II CATG 5 cut(s) 441, 472, 770, 1038, 1058
HincII GTYRAC 1 cut(s) 371
HindII GTYRAC 1 cut(s) 371
HindIII AAGCTT 1 cut(s) 1374
HinfI GANTC 9 cut(s) 78, 207, 582, 712, 979, 1099, 1348, 1562, 1600
HpaII CCGG 2 cut(s) 48, 1200
HphI GGTGA 3 cut(s) 700, 1214, 1372
Hpy166II GTNNAC 3 cut(s) 371, 1042, 1679
Hpy188I TCNGA 7 cut(s) 77, 206, 306, 480, 1755, 1770, 1809
Hpy8I GTNNAC 3 cut(s) 371, 1042, 1679
Hpy99I CGWCG 2 cut(s) 77, 206
HpyAV CCTTC 2 cut(s) 1394, 1515
HpyCH4III ACNGT 7 cut(s) 445, 599, 796, 1114, 1132, 1278, 1333
HpyCH4IV ACGT 1 cut(s) 1511
HpyF10VI GCNNNNNNNGC 2 cut(s) 753, 1165
HpyF3I CTNAG 6 cut(s) 174, 303, 408, 684, 1149, 1784
HpySE526I ACGT 1 cut(s) 1511
Hsp92II CATG 5 cut(s) 441, 472, 770, 1038, 1058
Kzo9I GATC 4 cut(s) 106, 235, 403, 1750
LguI GCTCTTC 1 cut(s) 1908
LmnI GCTCC 8 cut(s) 38, 46, 151, 280, 338, 556, 875, 934
Lsp1109I GCAGC 2 cut(s) 1291, 1589
LweI GCATC 6 cut(s) 320, 403, 937, 1039, 1069, 1155
MaeI CTAG 4 cut(s) 560, 995, 1907, 1949
MaeII ACGT 1 cut(s) 1511
MaeIII GTNAC 8 cut(s) 347, 398, 632, 788, 887, 1232, 1723, 1779
MalI GATC 4 cut(s) 108, 237, 405, 1752
MboI GATC 4 cut(s) 106, 235, 403, 1750
MfeI CAATTG 1 cut(s) 924
MhlI GDGCHC 2 cut(s) 43, 1002
MlyI GAGTC 5 cut(s) 72, 201, 591, 1357, 1609
MmeI TCCRAC 5 cut(s) 55, 184, 817, 1372, 1498
MroXI GAANNNNTTC 1 cut(s) 1613
MseI TTAA 7 cut(s) 395, 447, 650, 723, 1145, 1358, 1841
MslI CAYNNNNRTG 3 cut(s) 328, 771, 1035
MspA1I CMGCKG 1 cut(s) 1580
MspI CCGG 2 cut(s) 48, 1200
MspR9I CCNGG 7 cut(s) 48, 168, 297, 512, 1161, 1200, 1293
MunI CAATTG 1 cut(s) 924
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 5 cut(s) 168, 297, 512, 1161, 1293
MwoI GCNNNNNNNGC 2 cut(s) 753, 1165
NciI CCSGG 2 cut(s) 48, 1200
NcoI CCATGG 1 cut(s) 468
NdeI CATATG 1 cut(s) 880
NdeII GATC 4 cut(s) 106, 235, 403, 1750
NlaIII CATG 5 cut(s) 441, 472, 770, 1038, 1058
NlaIV GGNNCC 1 cut(s) 1323
NmuCI GTSAC 5 cut(s) 347, 398, 632, 887, 1232
NspI RCATGY 2 cut(s) 441, 770
NspV TTCGAA 1 cut(s) 964
PaeI GCATGC 1 cut(s) 770
PaqCI CACCTGC 1 cut(s) 1309
PciSI GCTCTTC 1 cut(s) 1908
PctI GAATGC 1 cut(s) 925
PdmI GAANNNNTTC 1 cut(s) 1613
PfeI GAWTC 4 cut(s) 712, 979, 1099, 1562
PkrI GCNGC 4 cut(s) 645, 1029, 1306, 1579
PleI GAGTC 5 cut(s) 72, 201, 590, 1356, 1608
PpsI GAGTC 5 cut(s) 72, 201, 590, 1356, 1608
PpuMI RGGWCCY 1 cut(s) 1321
PshBI ATTAAT 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 1321
Psp6I CCWGG 5 cut(s) 166, 295, 510, 1159, 1291
PspFI CCCAGC 2 cut(s) 521, 1483
PspGI CCWGG 5 cut(s) 166, 295, 510, 1159, 1291
PspN4I GGNNCC 1 cut(s) 1323
PspPI GGNCC 4 cut(s) 676, 1321, 1469, 1679
PspPPI RGGWCCY 1 cut(s) 1321
PstNI CAGNNNCTG 1 cut(s) 1661
PvuII CAGCTG 1 cut(s) 1580
RsaI GTAC 6 cut(s) 1059, 1250, 1330, 1447, 1947, 1953
RsaNI GTAC 6 cut(s) 1058, 1249, 1329, 1446, 1946, 1952
RseI CAYNNNNRTG 3 cut(s) 328, 771, 1035
SacI GAGCTC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 1908
SaqAI TTAA 7 cut(s) 395, 447, 650, 723, 1145, 1358, 1841
SatI GCNGC 4 cut(s) 644, 1028, 1305, 1578
Sau3AI GATC 4 cut(s) 106, 235, 403, 1750
Sau96I GGNCC 4 cut(s) 676, 1321, 1469, 1679
ScaI AGTACT 1 cut(s) 1330
SchI GAGTC 5 cut(s) 72, 201, 591, 1357, 1609
ScrFI CCNGG 7 cut(s) 48, 168, 297, 512, 1161, 1200, 1293
SduI GDGCHC 2 cut(s) 43, 1002
SfaNI GCATC 6 cut(s) 320, 403, 937, 1039, 1069, 1155
SfcI CTRYAG 1 cut(s) 1332
SfuI TTCGAA 1 cut(s) 964
SinI GGWCC 4 cut(s) 676, 1321, 1469, 1679
SmiMI CAYNNNNRTG 3 cut(s) 328, 771, 1035
SmlI CTYRAG 2 cut(s) 534, 1260
SmoI CTYRAG 2 cut(s) 534, 1260
SpeI ACTAGT 1 cut(s) 1948
SphI GCATGC 1 cut(s) 770
SsiI CCGC 5 cut(s) 33, 55, 184, 643, 1027
SspMI CTAG 4 cut(s) 560, 995, 1907, 1949
SstI GAGCTC 1 cut(s) 43
StyD4I CCNGG 7 cut(s) 46, 166, 295, 510, 1159, 1198, 1291
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 7 cut(s) 445, 599, 796, 1114, 1132, 1278, 1333
TaiI ACGT 1 cut(s) 1514
TaqI TCGA 6 cut(s) 544, 964, 1102, 1288, 1625, 1979
TatI WGTACW 4 cut(s) 1248, 1328, 1945, 1951
TauI GCSGC 2 cut(s) 646, 1030
TfiI GAWTC 4 cut(s) 712, 979, 1099, 1562
Tru1I TTAA 7 cut(s) 395, 447, 650, 723, 1145, 1358, 1841
Tru9I TTAA 7 cut(s) 395, 447, 650, 723, 1145, 1358, 1841
TscAI CASTG 5 cut(s) 678, 799, 868, 1119, 1444
TseFI GTSAC 5 cut(s) 347, 398, 632, 887, 1232
TseI GCWGC 2 cut(s) 1304, 1577
Tsp45I GTSAC 5 cut(s) 347, 398, 632, 887, 1232
TspDTI ATGAA 8 cut(s) 13, 979, 1043, 1112, 1227, 1256, 1328, 1839
TspGWI ACGGA 3 cut(s) 61, 190, 1223
TspRI CASTG 5 cut(s) 678, 799, 868, 1119, 1444
VpaK11BI GGWCC 4 cut(s) 676, 1321, 1469, 1679
VspI ATTAAT 1 cut(s) 723
XagI CCTNNNNNAGG 2 cut(s) 683, 1241
XapI RAATTY 1 cut(s) 1811
XbaI TCTAGA 1 cut(s) 994
XceI RCATGY 2 cut(s) 441, 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 1871
XmiI GTMKAC 1 cut(s) 1041
XmnI GAANNNNTTC 1 cut(s) 1613
XspI CTAG 4 cut(s) 560, 995, 1907, 1949
ZrmI AGTACT 1 cut(s) 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.