Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015293

Physical Location & Seq

Genomic Coordinates Reverse (-)

50796995 .. 50804823

Gene Structure 7829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1407900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGGAGGACATTGAGGATTTGTTGATTGGCAGCGGAGGCGGAGCTCCTCCCGGTTTTCGTCTGCCAATAAACACCGTCGGAATGAACCCAAAGAAGAAACCCAATCCCAATGGCCGCAATACCAACAAGAAGCTATCTCAAATCCAAGACCCACTCGCTCCTCTCTCTCCCAAAGTCCCTGGCACTCAGACTATATATATCAAAACATTTGGATGCTCACACAACCAGAGTGACAGTGAATATATGGCTGGTCAACTTTCAGCTTTCGGGTATCCGTTAAGTGACAATCCTGAGGAGGCAGACCTGTGGCTCATAAACACATGCACTGTCAAATCTCCAAGTCAGTCTGCCATGGACACTCTGATAGCAAAAGGTAAAGGTGCAAGAAAGCCCCTGGTGGTGGCTGGGTGTGTTCCACAAGGAAGTCGAGATCTAAAGGAGCTAGAAGGTGTCAGTATTGTAGGAGTCCAGCAAATTGACCGTGTGGTTGAAATTGTTGAAGAGACTTTGAAAGGTCATGAGGTGCGCCTTTTGAGTCGTAAGACATTGCCCGCACTTGACCTCCCCAAGGTGAGGAAAAACAAGGTCGTTGAGATTCTTCCCATTAATGTCGGTTGTTTAGGTGCTTGCACTTACTGCAAGACGAAACAAGCTCGTGGTCATTTAGGAAGTTATACTGTTGATAGCCTTGTGGGACGTGTAAAATCTGTGGTAGCTGATGGAGTTAAGGAAATATGGTTGAGCAGTGAAGATACTGGCGCTTATGGTCGTGACATTGGGGTCAATCTACCAATTTTATTGAATGCAATTGTCGCAGAACTCCCTTCTGATGCAAGCACAATGTTACGAATTGGGATGACAAATCCTCCATTCATTCTGGAACACTTGAAGGAAATAGCAGAGGTTTTGTGTCATCCATGTGTATACTCATTTCTACATGTACCAGTCCAATCTGGAAGTGATGCCGTCTTGACCGCAATGAATCGGGAATATACTGTAAGTGAGTTCAAGACAGTGGTAGATACCCTAACTGAGCTTGTGCCAGGGATGCAGATTGCAACTGATATAATATGTGGATTTCCTGGTGAAACGGATGAAGATTTTACTCAAACTCTTAGCCTTATTAAGGAGTACAAGTTCTCCCAAGTTCATATTTCACAGTTTTATCCTAGACCAGGAACCCCTGCTGCAAGGATGAAAAAGGTCCCCAGTACTGTAGTGAAGAAAAGGAGCCGTGAATTGACGTCTGCTTTTGAAGCTTTCGCACCATATGTTGGGATGGAGGGCAGGGTGGAAAGAATATGGATAACTGATATTGCTACTGATGGAATTCACTTGGTTGGCCATACCAAGGGATACGTGCAGGTTCTTGTAGCCGCTCCGGAAAGCATGTTGGGGACTTCAGCTATCACGAAGATCACATCGGTAGGAAGGTGGTCAGTTTTTGGAGAAGTGATTGAGACCATCCCTCACATAAATGATAAAACAGCTTCAACAAATGAAACGCGTAGTCAGGAAAAATGTTTTCCAGGTGCCAACAATTGTGAGACTTGCGCGTGTTCTACGGAACCAGAAACTTGTGCCTGTGGACCGGAAAGCTGTGGAGGACAGGCTACCTCGGGAGAATGTGCCGTAACGAAGAATGTCGTTCTGTTGGAAGATCGGAATAACAGAAATCTGCTTGGATGGTTACTGAGGAAGCGAAAGAATCAGGTTGAGAAACGCGTGGAGAACGAAATCGGCTTGGGATCCCAGAAGAAGCAAGAGCAAGCCCAAGGAAGATTGGGTGAATGGGGTTTTGTCGATATGGCTCTTCTGGGCGGGATGCTCGTGAGCTTCCTGACAATCGTAACCCTACTAGTACATCTCGGCTTTAGGATTCCGTCGTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0012505 GO:0016070 GO:0016740 GO:0016782 GO:0034470 GO:0034641 GO:0034660 GO:0035596 GO:0035598 GO:0035600 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050497 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Radical_SAM TRAM UPF0004

Protein Analysis

632

Amino Acids

68.52

Weight (kDa)

6.63

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0004	PF00919	65 - 143	2.3e-20	Uncharacterized protein family UPF0004
Radical_SAM	PF04055	202 - 375	6.8e-20	Radical SAM superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72090
fragaria_vesca	FvH4_5g32030
malus_domestica	MD08G1219300.v1.1 MD15G1407900.v1.1
prunus_persica	Prupe.1G553700_v2.0.a1
pyrus_communis	pycom08g19030 pycom15g36400
rosa_chinensis	RchiOBHm_Chr7g0228031
rosa_laevigata	RLG00000001594
rosa_multiflora	Rmu_sc0004858.1_g000015
rosa_roxburghii	Rroxscaffold_3G00231640
rosa_rugosa	Rorug07G0245400
rosa_samantha	Rh7AG399200 Rh7CG417300 Rh7DG394700
rosa_wichuraiana	Rw7G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	779
AatII	GACGTC	1 cut(s)	1247
Acc36I	ACCTGC	1 cut(s)	1354
AccB1I	GGYRCC	1 cut(s)	1532
AccB7I	CCANNNNNTGG	1 cut(s)	1274
AccBSI	CCGCTC	1 cut(s)	1379
AccI	GTMKAC	1 cut(s)	924
AccII	CGCG	3 cut(s)	1507, 1556, 1725
AccIII	TCCGGA	1 cut(s)	1381
AciI	CCGC	7 cut(s)	33, 39, 115, 552, 975, 1377, 1821
AclWI	GGATC	2 cut(s)	1743, 1756
AcoI	YGGCCR	2 cut(s)	112, 1342
AcsI	RAATTY	1 cut(s)	1329
AcuI	CTGAAG	1 cut(s)	1386
AcyI	GRCGYC	1 cut(s)	1244
AfaI	GTAC	4 cut(s)	942, 1133, 1213, 1863
AfiI	CCNNNNNNNGG	7 cut(s)	400, 568, 573, 1126, 1175, 1274, 1351
AflIII	ACRYGT	4 cut(s)	697, 937, 1505, 1723
AgsI	TTSAA	8 cut(s)	491, 500, 511, 802, 889, 1009, 1256, 1494
AhlI	ACTAGT	1 cut(s)	1858
AjiI	CACGTC	1 cut(s)	698
AjnI	CCWGG	6 cut(s)	178, 393, 1042, 1081, 1174, 1528
AloI	GAACNNNNNNTCC	2 cut(s)	1121, 1153
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	3 cut(s)	497, 1454, 1541
AlwI	GGATC	2 cut(s)	1743, 1756
Ama87I	CYCGRG	1 cut(s)	1618
Aor13HI	TCCGGA	1 cut(s)	1381
AoxI	GGCC	2 cut(s)	112, 1342
ApeKI	GCWGC	2 cut(s)	30, 1187
ApoI	RAATTY	1 cut(s)	1329
AseI	ATTAAT	1 cut(s)	606
AspLEI	GCGC	3 cut(s)	528, 761, 1556
AspS9I	GGNCC	2 cut(s)	1204, 1589
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	3 cut(s)	583, 1097, 1799
AvaI	CYCGRG	1 cut(s)	1618
AvaII	GGWCC	2 cut(s)	1204, 1589
AxyI	CCTNAGG	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	1344
BamHI	GGATCC	1 cut(s)	1748
BanI	GGYRCC	1 cut(s)	1532
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	2 cut(s)	654, 1829
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	42, 1174
BccI	CCATC	5 cut(s)	713, 1273, 1319, 1472, 1680
BceAI	ACGGC	3 cut(s)	950, 1218, 1616
BciT130I	CCWGG	6 cut(s)	180, 395, 1044, 1083, 1176, 1530
BciVI	GTATCC	2 cut(s)	282, 1349
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	3 cut(s)	497, 1454, 1541
BcuI	ACTAGT	1 cut(s)	1858
BfaI	CTAG	3 cut(s)	443, 1170, 1859
BfmI	CTRYAG	1 cut(s)	1215
BfoI	RGCGCY	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	1354
BfuI	GTATCC	2 cut(s)	282, 1349
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	4 cut(s)	31, 115, 1188, 1377
BlsI	GCNGC	4 cut(s)	32, 116, 1189, 1378
BmcAI	AGTACT	1 cut(s)	1213
Bme1390I	CCNGG	7 cut(s)	51, 180, 395, 1044, 1083, 1176, 1530
Bme18I	GGWCC	2 cut(s)	1204, 1589
BmeT110I	CYCGRG	1 cut(s)	1618
BmgBI	CACGTC	1 cut(s)	698
BmgT120I	GGNCC	2 cut(s)	1204, 1589
BmiI	GGNNCC	6 cut(s)	1180, 1206, 1232, 1534, 1569, 1750
BmrFI	CCNGG	7 cut(s)	51, 180, 395, 1044, 1083, 1176, 1530
BmrI	ACTGGG	1 cut(s)	1203
BmsI	GCATC	5 cut(s)	203, 820, 952, 1038, 1815
BmuI	ACTGGG	1 cut(s)	1203
BpuMI	CCSGG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	1360
BsaHI	GRCGYC	1 cut(s)	1244
BsaI	GGTCTC	1 cut(s)	1454
BsaJI	CCNNGG	8 cut(s)	178, 351, 393, 567, 1043, 1350, 1617, 1774
BsaWI	WCCGGW	2 cut(s)	1381, 1591
BsaXI	ACNNNNNCTCC	8 cut(s)	546, 576, 850, 880, 1121, 1124, 1151, 1154
Bsc4I	CCNNNNNNNGG	7 cut(s)	400, 568, 573, 1126, 1175, 1274, 1351
Bse1I	ACTGG	3 cut(s)	760, 944, 1209
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	2 cut(s)	545, 984
BseAI	TCCGGA	1 cut(s)	1381
BseBI	CCWGG	6 cut(s)	180, 395, 1044, 1083, 1176, 1530
BseDI	CCNNGG	8 cut(s)	178, 351, 393, 567, 1043, 1350, 1617, 1774
BseLI	CCNNNNNNNGG	7 cut(s)	400, 568, 573, 1126, 1175, 1274, 1351
BseMI	GCAATG	2 cut(s)	545, 984
BseMII	CTCAG	4 cut(s)	200, 282, 1023, 1685
BseNI	ACTGG	3 cut(s)	760, 944, 1209
BseRI	GAGGAG	3 cut(s)	36, 150, 308
BseXI	GCAGC	2 cut(s)	42, 1174
BseYI	CCCAGC	1 cut(s)	404
BsgI	GTGCAG	1 cut(s)	1382
Bsh1236I	CGCG	3 cut(s)	1507, 1556, 1725
BshFI	GGCC	2 cut(s)	114, 1344
BshNI	GGYRCC	1 cut(s)	1532
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	1618
BsiSI	CCGG	3 cut(s)	51, 1382, 1592
BslFI	GGGAC	4 cut(s)	161, 708, 1190, 1411
BslI	CCNNNNNNNGG	7 cut(s)	400, 568, 573, 1126, 1175, 1274, 1351
BsmAI	GTCTC	3 cut(s)	497, 1454, 1541
BsmFI	GGGAC	4 cut(s)	161, 708, 1190, 1411
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	2 cut(s)	114, 1344
Bso31I	GGTCTC	1 cut(s)	1454
BsoBI	CYCGRG	1 cut(s)	1618
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	1381
Bsp143I	GATC	4 cut(s)	430, 1416, 1660, 1748
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	7 cut(s)	33, 39, 115, 552, 975, 1377, 1821
BspANI	GGCC	2 cut(s)	114, 1344
BspCNI	CTCAG	4 cut(s)	199, 283, 1024, 1686
BspEI	TCCGGA	1 cut(s)	1381
BspFNI	CGCG	3 cut(s)	1507, 1556, 1725
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	6 cut(s)	1180, 1206, 1232, 1534, 1569, 1750
BspMI	ACCTGC	1 cut(s)	1354
BspPI	GGATC	2 cut(s)	1743, 1756
BspQI	GCTCTTC	1 cut(s)	1818
BspT107I	GGYRCC	1 cut(s)	1532
BspTNI	GGTCTC	1 cut(s)	1454
BsrBI	CCGCTC	1 cut(s)	1379
BsrDI	GCAATG	2 cut(s)	545, 984
BsrI	ACTGG	3 cut(s)	760, 944, 1209
BssECI	CCNNGG	8 cut(s)	178, 351, 393, 567, 1043, 1350, 1617, 1774
BssMI	GATC	4 cut(s)	430, 1416, 1660, 1748
BssNAI	GTATAC	1 cut(s)	925
BssNI	GRCGYC	1 cut(s)	1244
BssSI	CACGAG	2 cut(s)	654, 1829
BssT1I	CCWWGG	4 cut(s)	351, 567, 1350, 1774
Bst1107I	GTATAC	1 cut(s)	925
Bst2BI	CACGAG	2 cut(s)	654, 1829
Bst2UI	CCWGG	6 cut(s)	180, 395, 1044, 1083, 1176, 1530
Bst4CI	ACNGT	9 cut(s)	76, 236, 328, 482, 679, 997, 1015, 1161, 1216
Bst6I	CTCTTC	2 cut(s)	495, 1818
BstACI	GRCGYC	1 cut(s)	1244
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	1360
BstC8I	GCNNGC	4 cut(s)	552, 628, 835, 1770
BstDEI	CTNAG	5 cut(s)	186, 291, 1032, 1115, 1694
BstDSI	CCRYGG	1 cut(s)	351
BstENI	CCTNNNNNAGG	3 cut(s)	566, 1124, 1173
BstFNI	CGCG	3 cut(s)	1507, 1556, 1725
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	3 cut(s)	528, 761, 1556
BstKTI	GATC	4 cut(s)	433, 1419, 1663, 1751
BstMAI	GTCTC	3 cut(s)	497, 1454, 1541
BstMBI	GATC	4 cut(s)	430, 1416, 1660, 1748
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 636, 812, 1048, 1256
BstNI	CCWGG	6 cut(s)	180, 395, 1044, 1083, 1176, 1530
BstNSI	RCATGY	3 cut(s)	324, 941, 1393
BstSCI	CCNGG	7 cut(s)	49, 178, 393, 1042, 1081, 1174, 1528
BstSFI	CTRYAG	1 cut(s)	1215
BstUI	CGCG	3 cut(s)	1507, 1556, 1725
BstV1I	GCAGC	2 cut(s)	42, 1174
BstX2I	RGATCY	2 cut(s)	430, 1748
BstYI	RGATCY	2 cut(s)	430, 1748
BstZ17I	GTATAC	1 cut(s)	925
Bsu36I	CCTNAGG	1 cut(s)	291
BsuI	GTATCC	2 cut(s)	282, 1349
BsuRI	GGCC	2 cut(s)	114, 1344
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	698
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	4 cut(s)	241, 324, 751, 1020
BveI	ACCTGC	1 cut(s)	1354
Cac8I	GCNNGC	4 cut(s)	552, 628, 835, 1770
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	3 cut(s)	528, 761, 1556
Cfr13I	GGNCC	2 cut(s)	1204, 1589
Csp6I	GTAC	4 cut(s)	941, 1132, 1212, 1862
CviAII	CATG	6 cut(s)	321, 352, 518, 918, 938, 1390
CviQI	GTAC	4 cut(s)	941, 1132, 1212, 1862
DdeI	CTNAG	5 cut(s)	186, 291, 1032, 1115, 1694
DpnI	GATC	4 cut(s)	432, 1418, 1662, 1750
DpnII	GATC	4 cut(s)	430, 1416, 1660, 1748
DrdI	GACNNNNNNGTC	1 cut(s)	779
DseDI	GACNNNNNNGTC	1 cut(s)	779
EaeI	YGGCCR	2 cut(s)	112, 1342
Eam1104I	CTCTTC	2 cut(s)	495, 1818
EarI	CTCTTC	2 cut(s)	495, 1818
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	4 cut(s)	351, 567, 1350, 1774
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	1454
Eco47I	GGWCC	2 cut(s)	1204, 1589
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	1386
Eco81I	CCTNAGG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	1618
EcoICRI	GAGCTC	1 cut(s)	44
EcoNI	CCTNNNNNAGG	3 cut(s)	566, 1124, 1173
EcoO109I	RGGNCCY	1 cut(s)	1204
EcoRI	GAATTC	1 cut(s)	1329
EcoRII	CCWGG	6 cut(s)	178, 393, 1042, 1081, 1174, 1528
EcoT14I	CCWWGG	4 cut(s)	351, 567, 1350, 1774
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	4 cut(s)	351, 567, 1350, 1774
FaeI	CATG	6 cut(s)	324, 355, 521, 921, 941, 1393
FaqI	GGGAC	4 cut(s)	161, 708, 1190, 1411
FatI	CATG	6 cut(s)	320, 351, 517, 917, 937, 1389
FauI	CCCGC	2 cut(s)	559, 1814
FauNDI	CATATG	1 cut(s)	1270
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	4 cut(s)	31, 115, 1188, 1377
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	31, 115, 1188, 1377
FspBI	CTAG	3 cut(s)	443, 1170, 1859
GlaI	GCGC	3 cut(s)	527, 760, 1555
GluI	GCNGC	4 cut(s)	31, 115, 1188, 1377
GsaI	CCCAGC	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	2 cut(s)	114, 1344
HapII	CCGG	3 cut(s)	51, 1382, 1592
HhaI	GCGC	3 cut(s)	528, 761, 1556
Hin1I	GRCGYC	1 cut(s)	1244
Hin1II	CATG	6 cut(s)	324, 355, 521, 921, 941, 1393
Hin6I	GCGC	3 cut(s)	526, 759, 1554
HinP1I	GCGC	3 cut(s)	526, 759, 1554
HincII	GTYRAC	1 cut(s)	254
HindII	GTYRAC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	1257
HinfI	GANTC	6 cut(s)	465, 535, 595, 982, 1708, 1879
HpaII	CCGG	3 cut(s)	51, 1382, 1592
HphI	GGTGA	3 cut(s)	583, 1097, 1799
Hpy166II	GTNNAC	3 cut(s)	254, 925, 1589
Hpy188I	TCNGA	5 cut(s)	80, 189, 363, 829, 1665
Hpy8I	GTNNAC	3 cut(s)	254, 925, 1589
Hpy99I	CGWCG	2 cut(s)	80, 1888
HpyAV	CCTTC	4 cut(s)	440, 834, 883, 1425
HpyCH4III	ACNGT	9 cut(s)	76, 236, 328, 482, 679, 997, 1015, 1161, 1216
HpyCH4IV	ACGT	3 cut(s)	697, 1244, 1359
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 636, 812, 1048, 1256
HpyF3I	CTNAG	5 cut(s)	186, 291, 1032, 1115, 1694
HpySE526I	ACGT	3 cut(s)	697, 1244, 1359
Hsp92I	GRCGYC	1 cut(s)	1244
Hsp92II	CATG	6 cut(s)	324, 355, 521, 921, 941, 1393
HspAI	GCGC	3 cut(s)	526, 759, 1554
Kpn2I	TCCGGA	1 cut(s)	1381
Kzo9I	GATC	4 cut(s)	430, 1416, 1660, 1748
LguI	GCTCTTC	1 cut(s)	1818
LmnI	GCTCC	6 cut(s)	41, 49, 163, 439, 1230, 1384
Lsp1109I	GCAGC	2 cut(s)	42, 1174
LweI	GCATC	5 cut(s)	203, 820, 952, 1038, 1815
MaeI	CTAG	3 cut(s)	443, 1170, 1859
MaeII	ACGT	3 cut(s)	697, 1244, 1359
MaeIII	GTNAC	7 cut(s)	230, 281, 770, 843, 1633, 1689, 1849
MalI	GATC	4 cut(s)	432, 1418, 1662, 1750
MbiI	CCGCTC	1 cut(s)	1379
MboI	GATC	4 cut(s)	430, 1416, 1660, 1748
MfeI	CAATTG	2 cut(s)	807, 1540
MflI	RGATCY	2 cut(s)	430, 1748
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	1344
MluCI	AATT	9 cut(s)	474, 492, 792, 807, 849, 1238, 1329, 1540, 1891
MluI	ACGCGT	2 cut(s)	1505, 1723
MluNI	TGGCCA	1 cut(s)	1344
MlyI	GAGTC	2 cut(s)	474, 544
MmeI	TCCRAC	2 cut(s)	58, 1635
Mox20I	TGGCCA	1 cut(s)	1344
MroI	TCCGGA	1 cut(s)	1381
MscI	TGGCCA	1 cut(s)	1344
MseI	TTAA	5 cut(s)	278, 606, 726, 1125, 1894
MslI	CAYNNNNRTG	3 cut(s)	211, 918, 1476
Msp20I	TGGCCA	1 cut(s)	1344
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	3 cut(s)	51, 1382, 1592
MspR9I	CCNGG	7 cut(s)	51, 180, 395, 1044, 1083, 1176, 1530
MunI	CAATTG	2 cut(s)	807, 1540
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	6 cut(s)	180, 395, 1044, 1083, 1176, 1530
MvnI	CGCG	3 cut(s)	1507, 1556, 1725
MwoI	GCNNNNNNNGC	5 cut(s)	36, 636, 812, 1048, 1256
NciI	CCSGG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	351
NdeI	CATATG	1 cut(s)	1270
NdeII	GATC	4 cut(s)	430, 1416, 1660, 1748
NlaIII	CATG	6 cut(s)	324, 355, 521, 921, 941, 1393
NlaIV	GGNNCC	6 cut(s)	1180, 1206, 1232, 1534, 1569, 1750
NmeAIII	GCCGAG	1 cut(s)	1848
NmuCI	GTSAC	3 cut(s)	230, 281, 770
NspI	RCATGY	3 cut(s)	324, 941, 1393
PagI	TCATGA	1 cut(s)	517
PciI	ACATGT	1 cut(s)	937
PciSI	GCTCTTC	1 cut(s)	1818
PctI	GAATGC	1 cut(s)	808
PfeI	GAWTC	4 cut(s)	595, 982, 1708, 1879
PflMI	CCANNNNNTGG	1 cut(s)	1274
PkrI	GCNGC	4 cut(s)	32, 116, 1189, 1378
PleI	GAGTC	2 cut(s)	473, 543
PpsI	GAGTC	2 cut(s)	473, 543
Ppu21I	YACGTR	1 cut(s)	1360
PpuMI	RGGWCCY	1 cut(s)	1204
PscI	ACATGT	1 cut(s)	937
PshBI	ATTAAT	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	1204
Psp6I	CCWGG	6 cut(s)	178, 393, 1042, 1081, 1174, 1528
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	6 cut(s)	178, 393, 1042, 1081, 1174, 1528
PspN4I	GGNNCC	6 cut(s)	1180, 1206, 1232, 1534, 1569, 1750
PspPI	GGNCC	2 cut(s)	1204, 1589
PspPPI	RGGWCCY	1 cut(s)	1204
PsuI	RGATCY	2 cut(s)	430, 1748
RsaI	GTAC	4 cut(s)	942, 1133, 1213, 1863
RsaNI	GTAC	4 cut(s)	941, 1132, 1212, 1862
RseI	CAYNNNNRTG	3 cut(s)	211, 918, 1476
SacI	GAGCTC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	1818
SaqAI	TTAA	5 cut(s)	278, 606, 726, 1125, 1894
SatI	GCNGC	4 cut(s)	31, 115, 1188, 1377
Sau3AI	GATC	4 cut(s)	430, 1416, 1660, 1748
Sau96I	GGNCC	2 cut(s)	1204, 1589
ScaI	AGTACT	1 cut(s)	1213
SchI	GAGTC	2 cut(s)	474, 544
ScrFI	CCNGG	7 cut(s)	51, 180, 395, 1044, 1083, 1176, 1530
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	5 cut(s)	203, 820, 952, 1038, 1815
SfcI	CTRYAG	1 cut(s)	1215
SinI	GGWCC	2 cut(s)	1204, 1589
SmiMI	CAYNNNNRTG	3 cut(s)	211, 918, 1476
SpeI	ACTAGT	1 cut(s)	1858
Sse9I	AATT	9 cut(s)	474, 492, 792, 807, 849, 1238, 1329, 1540, 1891
SsiI	CCGC	7 cut(s)	33, 39, 115, 552, 975, 1377, 1821
SspMI	CTAG	3 cut(s)	443, 1170, 1859
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	7 cut(s)	49, 178, 393, 1042, 1081, 1174, 1528
StyI	CCWWGG	4 cut(s)	351, 567, 1350, 1774
TaaI	ACNGT	9 cut(s)	76, 236, 328, 482, 679, 997, 1015, 1161, 1216
TaiI	ACGT	3 cut(s)	700, 1247, 1362
TaqI	TCGA	2 cut(s)	427, 1803
TasI	AATT	9 cut(s)	474, 492, 792, 807, 849, 1238, 1329, 1540, 1891
TatI	WGTACW	3 cut(s)	1131, 1211, 1861
TauI	GCSGC	2 cut(s)	117, 1379
TfiI	GAWTC	4 cut(s)	595, 982, 1708, 1879
Tru1I	TTAA	5 cut(s)	278, 606, 726, 1125, 1894
Tru9I	TTAA	5 cut(s)	278, 606, 726, 1125, 1894
TscAI	CASTG	4 cut(s)	241, 331, 751, 1020
TseFI	GTSAC	3 cut(s)	230, 281, 770
TseI	GCWGC	2 cut(s)	30, 1187
Tsp45I	GTSAC	3 cut(s)	230, 281, 770
TspDTI	ATGAA	7 cut(s)	98, 862, 995, 1110, 1139, 1211, 1515
TspGWI	ACGGA	4 cut(s)	264, 1106, 1580, 1872
TspRI	CASTG	4 cut(s)	241, 331, 751, 1020
Van91I	CCANNNNNTGG	1 cut(s)	1274
VpaK11BI	GGWCC	2 cut(s)	1204, 1589
VspI	ATTAAT	1 cut(s)	606
XagI	CCTNNNNNAGG	3 cut(s)	566, 1124, 1173
XapI	RAATTY	1 cut(s)	1329
XceI	RCATGY	3 cut(s)	324, 941, 1393
XmiI	GTMKAC	1 cut(s)	924
XspI	CTAG	3 cut(s)	443, 1170, 1859
ZraI	GACGTC	1 cut(s)	1245
ZrmI	AGTACT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.