AT1G72470

exocyst complex component

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
27283628 .. 27285973
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72470.1

Sequence Viewer

Length: 1902 bp
ATGGAACCACATGACCAAACTCACGGCGGCGACGGAGGAGAAGGAGAGAACTGTTCAGTTTCCGGATTCGATTCAGCTGAAAAAGTCATCATCCGATGGGACGCGACGGCGTCAGAAGAAGCAAGAGAGAAGATGATATTCAACGATCCACAAGAAGTTAACCTTTACCTCAACGCCGTCGATGAAATCCAGAAATATGTATCTTCCGGCGGAGAGATTGAGAATCGAGCTAATTCAGCTATCCAGATAGCTATGGCTCGTCTTGAAGACGAGTTCAGGAATATTCTCGTTTCTCATAGTTCTCCGATCAACTCTGATTCGTTAATGCTGTCTTCTTCATCTTCTTCTCACCTTGAGGTTGATGAAGATGGAAGTAGTAGTAATAATGGTAACGAAGAAGATGATCAACAAGAGGAAGAAGAAACGGATCTTCTGAAACGATCCGGTTCAAGTGCAAGTACCGGTTCAGCGACGGTTCGATTACCAACCGGAAGAGGTAGTTACAGTAGATCCACCAGTAGTATACGCGAGATCGAGCTGATTCCGATCGAATCGGTGATTCATCTGAGCTGGATTGCTCGGCGAATGGTCTCCGCCGGTTATCTCCGTGAATGTATTCAAGTCTACGGAAGCGTTCGCAAATCCGCCGTCGATTCAAGTTTCCGACGGTTAGGGATCGAGAAACTCAGCATCGGAGATGTTCAGAGGCTAAATTGGGAAGCGCTTGAGCAGAAGATCCGTCGTTGGATCCGAGCAGCTAAGATCTGTGTGAGAGTTGTGTTCGCAAGCGAGAAATTGCTCTGTGAGCATGTTTTTGAAAGCGTTGGAGCTGTCAATATCCACGAAGCTTGTTTCATGGAAACAGTCAAAGGTCCGGCGATTCAGCTTTTTAACTTCGCGGAGGCGATTAGTATCAGTCGGAGATCGCCGGAGAAGCTTTTTAAGATCCTTGATCTACACGACGCTTTGATTGAGCTTTTGCCTGATATCGAGTCAGTTTTCGATCTGAAATCTTCAGATTCGATTAGAGTTCAAGCGGCGGAGATATTATCGAGATTAGCGGAAGCGGCGAGAGGGATATTATCGGAATTCGAAAACGCCGTTCTTCGTGAACCTTCTAGAGTTCCTGTTCCTGGAGGTACGATACATCCATTGACGAGGTATGTCATGAACTACATAAGCTTGATCTCAGAGTATAGACCAACGTTGATCGATCTCATCATGTCGAAACCATCGAGAAACGCAACGGATTCAAACACTCCAGATTTCGATTTCTCTGAGTTAGAGAATAACAAAGGTCCATTAGCACTTCATTTGATTTGGATCATAGTGATATTGCAATTCAATCTCGAAGGCAAATCAAAGTACTATAAAAACGCAGCTTTATCACATCTCTTTATCATGAACAACGCACATTACATTGTTCAGAAGATTAAAGGGTCACCGGAGCTACGGGAAATGATTGGTGATCTTTACTTGAGGAAGCTAACGGGTAAGTTTAGGCAAGCTGCGACGTATTACCAAAGAGCTGCTTGGGTTAAAGTCTTGTATTGTTTAAGAGATGAAGGTTTACATACGAAAGGAAGTTTCTCATCAGGTGTTTCGAGAAGTGCGTTGAGAGAGAGGTTTAAATCTTTTAATGCTTTGTTTGAGGAAGTTCATAGGGTTCAATCACAATGGTTGGTTCCGGATTCTCAGCTGAGGGAAGAGTTGAAGATTTCGATATTGGAGAAGCTTAGTCCCGCTTATAGATCGTTTCTTGGGAGGTTCAGGAGTCATATAGAGAGCGGGAAACATCCGGAGAATTACATCAAGATCTCAGTCGAAGATCTAGAGACCGAGGTTCTTGATTTGTTCGAGGGGTATTCTGCAACTCAGCATCTGAGAAGACGATCCGAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

633

Amino Acids

71.46

Weight (kDa)

5.71

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_N PF20669 23 - 97 2.2e-12 Exocyst complex component Exo70 N-terminal
Exo70_C PF03081 248 - 613 1.9e-125 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1788
AccI GTMKAC 2 cut(s) 523, 624
AccII CGCG 3 cut(s) 104, 528, 899
AccIII TCCGGA 3 cut(s) 62, 1687, 1798
AclI AACGTT 1 cut(s) 1205
AcsI RAATTY 1 cut(s) 1088
AcuI CTGAAG 1 cut(s) 999
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 3 cut(s) 460, 1141, 1367
AfeI AGCGCT 1 cut(s) 723
AfiI CCNNNNNNNGG 1 cut(s) 1133
AgeI ACCGGT 1 cut(s) 461
AjnI CCWGG 1 cut(s) 1132
Alw26I GTCTC 2 cut(s) 595, 1829
AlwNI CAGNNNCTG 1 cut(s) 1882
Aor13HI TCCGGA 3 cut(s) 62, 1687, 1798
Aor51HI AGCGCT 1 cut(s) 723
ApeKI GCWGC 4 cut(s) 755, 1379, 1508, 1529
ApoI RAATTY 1 cut(s) 1088
ArsI GACNNNNNNTTYG 2 cut(s) 633, 665
AsiGI ACCGGT 1 cut(s) 461
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 2 cut(s) 872, 1298
AsuHPI GGTGA 4 cut(s) 341, 568, 1434, 1478
AsuII TTCGAA 1 cut(s) 1092
AvaII GGWCC 2 cut(s) 872, 1298
BamHI GGATCC 1 cut(s) 747
BbsI GAAGAC 3 cut(s) 273, 324, 1894
BbvCI CCTCAGC 1 cut(s) 1700
BbvI GCAGC 4 cut(s) 767, 1391, 1495, 1516
BccI CCATC 3 cut(s) 90, 362, 1240
BceAI ACGGC 5 cut(s) 40, 123, 161, 632, 1085
BciT130I CCWGG 1 cut(s) 1134
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 595, 1829
BfaI CTAG 2 cut(s) 1119, 1832
BfoI RGCGCY 1 cut(s) 725
BglII AGATCT 3 cut(s) 762, 1815, 1828
BisI GCNGC 7 cut(s) 28, 756, 1038, 1068, 1380, 1509, 1530
BlsI GCNGC 7 cut(s) 29, 757, 1039, 1069, 1381, 1510, 1531
BmcAI AGTACT 1 cut(s) 1367
Bme1390I CCNGG 1 cut(s) 1134
Bme18I GGWCC 2 cut(s) 872, 1298
BmgT120I GGNCC 2 cut(s) 872, 1298
BmiI GGNNCC 3 cut(s) 6, 749, 1686
BmrFI CCNGG 1 cut(s) 1134
BmsI GCATC 2 cut(s) 699, 1888
BpiI GAAGAC 3 cut(s) 273, 324, 1894
BpmI CTGGAG 2 cut(s) 1155, 1245
Bpu10I CCTNAGC 1 cut(s) 1700
Bpu14I TTCGAA 1 cut(s) 1092
BpuEI CTTGAG 3 cut(s) 374, 746, 1498
Bsa29I ATCGAT 1 cut(s) 1212
BsaBI GATNNNNATC 3 cut(s) 545, 911, 1322
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 2 cut(s) 595, 1829
BsaJI CCNNGG 1 cut(s) 1839
BsaWI WCCGGW 7 cut(s) 62, 443, 461, 488, 1444, 1687, 1798
Bsc4I CCNNNNNNNGG 1 cut(s) 1133
Bse118I RCCGGY 2 cut(s) 461, 596
Bse1I ACTGG 1 cut(s) 516
Bse8I GATNNNNATC 3 cut(s) 545, 911, 1322
BseAI TCCGGA 3 cut(s) 62, 1687, 1798
BseBI CCWGG 1 cut(s) 1134
BseCI ATCGAT 1 cut(s) 1212
BseDI CCNNGG 1 cut(s) 1839
BseGI GGATG 3 cut(s) 90, 1147, 1795
BseJI GATNNNNATC 3 cut(s) 545, 911, 1322
BseLI CCNNNNNNNGG 1 cut(s) 1133
BseMII CTCAG 9 cut(s) 557, 700, 1203, 1269, 1691, 1709, 1833, 1874, 1889
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 4 cut(s) 767, 1391, 1495, 1516
Bsh1236I CGCG 3 cut(s) 104, 528, 899
Bsh1285I CGRYCG 1 cut(s) 549
BshTI ACCGGT 1 cut(s) 461
BshVI ATCGAT 1 cut(s) 1212
BsiEI CGRYCG 1 cut(s) 549
BslFI GGGAC 2 cut(s) 113, 1725
BslI CCNNNNNNNGG 1 cut(s) 1133
BsmAI GTCTC 2 cut(s) 595, 1829
BsmFI GGGAC 2 cut(s) 113, 1725
Bso31I GGTCTC 2 cut(s) 595, 1829
Bsp119I TTCGAA 1 cut(s) 1092
Bsp13I TCCGGA 3 cut(s) 62, 1687, 1798
BspCNI CTCAG 9 cut(s) 558, 699, 1202, 1270, 1692, 1708, 1832, 1875, 1888
BspDI ATCGAT 1 cut(s) 1212
BspEI TCCGGA 3 cut(s) 62, 1687, 1798
BspFNI CGCG 3 cut(s) 104, 528, 899
BspHI TCATGA 2 cut(s) 1167, 1401
BspLI GGNNCC 3 cut(s) 6, 749, 1686
BspT104I TTCGAA 1 cut(s) 1092
BspTNI GGTCTC 2 cut(s) 595, 1829
BsrBI CCGCTC 1 cut(s) 1788
BsrFI RCCGGY 2 cut(s) 461, 596
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 2 cut(s) 461, 596
BssECI CCNNGG 1 cut(s) 1839
BssNAI GTATAC 1 cut(s) 524
BssNI GRCGYC 1 cut(s) 110
Bst1107I GTATAC 1 cut(s) 524
Bst2UI CCWGG 1 cut(s) 1134
Bst4CI ACNGT 5 cut(s) 53, 475, 506, 669, 865
Bst6I CTCTTC 2 cut(s) 487, 1701
BstACI GRCGYC 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 1092
BstC8I GCNNGC 2 cut(s) 787, 1506
BstEII GGTNACC 1 cut(s) 1440
BstF5I GGATG 3 cut(s) 90, 1147, 1795
BstFNI CGCG 3 cut(s) 104, 528, 899
BstH2I RGCGCY 1 cut(s) 725
BstHHI GCGC 1 cut(s) 724
BstMAI GTCTC 2 cut(s) 595, 1829
BstMCI CGRYCG 1 cut(s) 549
BstMWI GCNNNNNNNGC 4 cut(s) 236, 805, 934, 1067
BstNI CCWGG 1 cut(s) 1134
BstNSI RCATGY 1 cut(s) 812
BstPI GGTNACC 1 cut(s) 1440
BstSCI CCNGG 1 cut(s) 1132
BstUI CGCG 3 cut(s) 104, 528, 899
BstV1I GCAGC 4 cut(s) 767, 1391, 1495, 1516
BstV2I GAAGAC 3 cut(s) 273, 324, 1894
BstX2I RGATCY 8 cut(s) 427, 509, 735, 747, 762, 945, 1815, 1828
BstYI RGATCY 8 cut(s) 427, 509, 735, 747, 762, 945, 1815, 1828
BstZ17I GTATAC 1 cut(s) 524
Bsu15I ATCGAT 1 cut(s) 1212
BsuTUI ATCGAT 1 cut(s) 1212
BtsCI GGATG 3 cut(s) 90, 1147, 1795
Cac8I GCNNGC 2 cut(s) 787, 1506
CaiI CAGNNNCTG 1 cut(s) 1882
CciI TCATGA 2 cut(s) 1167, 1401
CfoI GCGC 1 cut(s) 724
Cfr10I RCCGGY 2 cut(s) 461, 596
Cfr13I GGNCC 2 cut(s) 872, 1298
ClaI ATCGAT 1 cut(s) 1212
CseI GACGC 3 cut(s) 99, 110, 971
Csp6I GTAC 3 cut(s) 459, 1140, 1366
CspAI ACCGGT 1 cut(s) 461
CspCI CAANNNNNGTGG 2 cut(s) 830, 865
CviAII CATG 6 cut(s) 11, 809, 856, 1168, 1222, 1402
CviQI GTAC 3 cut(s) 459, 1140, 1366
DraI TTTAAA 1 cut(s) 1630
Eam1104I CTCTTC 2 cut(s) 487, 1701
EarI CTCTTC 2 cut(s) 487, 1701
EciI GGCGGA 4 cut(s) 225, 583, 634, 1055
Eco31I GGTCTC 2 cut(s) 595, 1829
Eco32I GATATC 1 cut(s) 988
Eco47I GGWCC 2 cut(s) 872, 1298
Eco47III AGCGCT 1 cut(s) 723
Eco57I CTGAAG 1 cut(s) 999
Eco91I GGTNACC 1 cut(s) 1440
EcoO65I GGTNACC 1 cut(s) 1440
EcoRI GAATTC 1 cut(s) 1088
EcoRII CCWGG 1 cut(s) 1132
EcoRV GATATC 1 cut(s) 988
FaeI CATG 6 cut(s) 14, 812, 859, 1171, 1225, 1405
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 1516, 1548
FaqI GGGAC 2 cut(s) 113, 1725
FatI CATG 6 cut(s) 10, 808, 855, 1167, 1221, 1401
FauI CCCGC 2 cut(s) 1750, 1781
FbaI TGATCA 1 cut(s) 403
FblI GTMKAC 2 cut(s) 523, 624
Fnu4HI GCNGC 7 cut(s) 28, 756, 1038, 1068, 1380, 1509, 1530
FokI GGATG 3 cut(s) 77, 1134, 1782
Fsp4HI GCNGC 7 cut(s) 28, 756, 1038, 1068, 1380, 1509, 1530
FspBI CTAG 2 cut(s) 1119, 1832
GlaI GCGC 1 cut(s) 723
GluI GCNGC 7 cut(s) 28, 756, 1038, 1068, 1380, 1509, 1530
GsuI CTGGAG 2 cut(s) 1155, 1245
HaeII RGCGCY 1 cut(s) 725
HgaI GACGC 3 cut(s) 99, 110, 971
HhaI GCGC 1 cut(s) 724
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 6 cut(s) 14, 812, 859, 1171, 1225, 1405
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 4 cut(s) 846, 935, 1180, 1733
HpaI GTTAAC 1 cut(s) 160
HphI GGTGA 4 cut(s) 341, 568, 1434, 1478
Hpy166II GTNNAC 5 cut(s) 160, 524, 625, 1112, 1571
Hpy8I GTNNAC 5 cut(s) 160, 524, 625, 1112, 1571
Hpy99I CGWCG 9 cut(s) 35, 109, 182, 475, 653, 669, 744, 965, 1516
HpyAV CCTTC 4 cut(s) 35, 1125, 1346, 1559
HpyCH4III ACNGT 5 cut(s) 53, 475, 506, 669, 865
HpyCH4IV ACGT 2 cut(s) 1205, 1514
HpyCH4V TGCA 3 cut(s) 455, 1339, 1871
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 805, 934, 1067
HpySE526I ACGT 2 cut(s) 1205, 1514
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 6 cut(s) 14, 812, 859, 1171, 1225, 1405
HspAI GCGC 1 cut(s) 722
Kpn2I TCCGGA 3 cut(s) 62, 1687, 1798
Ksp22I TGATCA 1 cut(s) 403
KspAI GTTAAC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 827, 1447
Lsp1109I GCAGC 4 cut(s) 767, 1391, 1495, 1516
LweI GCATC 2 cut(s) 699, 1888
MaeI CTAG 2 cut(s) 1119, 1832
MaeII ACGT 2 cut(s) 1205, 1514
MaeIII GTNAC 3 cut(s) 389, 500, 1440
MbiI CCGCTC 1 cut(s) 1788
MflI RGATCY 8 cut(s) 427, 509, 735, 747, 762, 945, 1815, 1828
MluCI AATT 6 cut(s) 232, 712, 794, 1088, 1340, 1804
MlyI GAGTC 2 cut(s) 1001, 1783
MmeI TCCRAC 4 cut(s) 688, 725, 805, 899
MroI TCCGGA 3 cut(s) 62, 1687, 1798
MroXI GAANNNNTTC 1 cut(s) 615
MseI TTAA 9 cut(s) 159, 323, 891, 942, 1434, 1539, 1556, 1629, 1638
MspA1I CMGCKG 2 cut(s) 77, 1699
MspR9I CCNGG 1 cut(s) 1134
MvaI CCWGG 1 cut(s) 1134
MvnI CGCG 3 cut(s) 104, 528, 899
MwoI GCNNNNNNNGC 4 cut(s) 236, 805, 934, 1067
NlaIII CATG 6 cut(s) 14, 812, 859, 1171, 1225, 1405
NlaIV GGNNCC 3 cut(s) 6, 749, 1686
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 1 cut(s) 1440
NspI RCATGY 1 cut(s) 812
NspV TTCGAA 1 cut(s) 1092
PagI TCATGA 2 cut(s) 1167, 1401
PcsI WCGNNNNNNNCGW 4 cut(s) 748, 1098, 1232, 1610
PdmI GAANNNNTTC 1 cut(s) 615
PflFI GACNNNGTC 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 1132
PinAI ACCGGT 1 cut(s) 461
PkrI GCNGC 7 cut(s) 29, 757, 1039, 1069, 1381, 1510, 1531
Ple19I CGATCG 1 cut(s) 549
PleI GAGTC 2 cut(s) 1000, 1782
PpsI GAGTC 2 cut(s) 1000, 1782
Psp1406I AACGTT 1 cut(s) 1205
Psp6I CCWGG 1 cut(s) 1132
PspEI GGTNACC 1 cut(s) 1440
PspGI CCWGG 1 cut(s) 1132
PspN4I GGNNCC 3 cut(s) 6, 749, 1686
PspPI GGNCC 2 cut(s) 872, 1298
PstNI CAGNNNCTG 1 cut(s) 1882
PsuI RGATCY 8 cut(s) 427, 509, 735, 747, 762, 945, 1815, 1828
PsyI GACNNNGTC 1 cut(s) 109
PvuI CGATCG 1 cut(s) 549
PvuII CAGCTG 2 cut(s) 77, 1699
RsaI GTAC 3 cut(s) 460, 1141, 1367
RsaNI GTAC 3 cut(s) 459, 1140, 1366
SaqAI TTAA 9 cut(s) 159, 323, 891, 942, 1434, 1539, 1556, 1629, 1638
SatI GCNGC 7 cut(s) 28, 756, 1038, 1068, 1380, 1509, 1530
Sau96I GGNCC 2 cut(s) 872, 1298
ScaI AGTACT 1 cut(s) 1367
SchI GAGTC 2 cut(s) 1001, 1783
ScrFI CCNGG 1 cut(s) 1134
SfaNI GCATC 2 cut(s) 699, 1888
SfuI TTCGAA 1 cut(s) 1092
SinI GGWCC 2 cut(s) 872, 1298
SmlI CTYRAG 3 cut(s) 353, 725, 1477
SmoI CTYRAG 3 cut(s) 353, 725, 1477
Sse9I AATT 6 cut(s) 232, 712, 794, 1088, 1340, 1804
SspI AATATT 1 cut(s) 283
SspMI CTAG 2 cut(s) 1119, 1832
StyD4I CCNGG 1 cut(s) 1132
TaaI ACNGT 5 cut(s) 53, 475, 506, 669, 865
TaiI ACGT 2 cut(s) 1208, 1517
TaqII GACCGA 1 cut(s) 1853
TasI AATT 6 cut(s) 232, 712, 794, 1088, 1340, 1804
TatI WGTACW 1 cut(s) 1365
TauI GCSGC 3 cut(s) 30, 1040, 1070
Tru1I TTAA 9 cut(s) 159, 323, 891, 942, 1434, 1539, 1556, 1629, 1638
Tru9I TTAA 9 cut(s) 159, 323, 891, 942, 1434, 1539, 1556, 1629, 1638
TseFI GTSAC 1 cut(s) 1440
TseI GCWGC 4 cut(s) 755, 1379, 1508, 1529
Tsp45I GTSAC 1 cut(s) 1440
TspGWI ACGGA 6 cut(s) 48, 440, 596, 642, 728, 1262
Tth111I GACNNNGTC 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 872, 1298
XapI RAATTY 1 cut(s) 1088
XbaI TCTAGA 2 cut(s) 1118, 1831
XceI RCATGY 1 cut(s) 812
XmiI GTMKAC 2 cut(s) 523, 624
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 2 cut(s) 1119, 1832
ZrmI AGTACT 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.