Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454727.1

Orthogroup ID

OG0009987

Physical Location & Seq

Genomic Coordinates Reverse (-)

742 .. 1752

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

gccgaggccatcagcatcagccgccgctcgccggagaagctcttcaagattctcgacttacatgacgctttgcttgacttggttcccgatattgactctgttttcgaatccaagtcgtccgagtccattaggattcaggcggccgagatcttatcgagactggcggaggcggcgagggggattctgtcggagtttgaaaacgccgtgcttcgtgagccgtcgagggttccggtaccgggtggtacaattcaccccttgactcggtatgtgatgaattatatagctttgatttctgattataagcagactttgaatgagcttattgtgtcgaaaccatccaccgggtcgcggtactccggtgaccccaccacgccggatatggagtttgctgaattggaggggaagacccccttggctttgcatttgatttggattattgtgattttgcaatttaatttggatggcaagtctaagcactataaggatgcttccatagctcatttgtttatgatgaacaatgttcattatattgttcagaagattaaagggtcccccgaacttagggaaatgatcggggatgattacttgaggaagatgacagggaagttccggcaggcagccactagctatcagagagctacttgggtgaaggtgttgtattgtttgcgagatgaggggttacatgtgagtggaagtttctcttctggggtttcaaagagtgctttgagagagaggttcaagtcttttaatgccatctttgaggaggttcataggactcaagctacttggttggtacctgattcccagcttagggaggagctgcgaatatccatctcggagaagttgatccctgcttataggtcctttcttggccggttcaggagccatatagagagtgggaagcatccagaaaactacatcaagtattccgtcgaggacttggaaactgctgtcttggatttctttgaaggatactctgtgtcccagcacttgaggaggagatctaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

336

Amino Acids

38.31

Weight (kDa)

7.99

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54090 AT1G72470 AT3G14090
fragaria_vesca	FvH4_6g35110
malus_domestica	MD17G1164500.v1.1
prunus_persica	Prupe.3G038000_v2.0.a1 Prupe.3G038000_v2.0.a1
pyrus_communis	pycom09g09710 pycom17g15760
rosa_chinensis	RchiOBHm_Chr2g0146331
rosa_laevigata	RLG00000020194
rosa_multiflora	Rmu_co8454727.1_g000001 Rmu_sc0004094.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100170
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450500 Rh2BG462800 Rh2CG437300 Rh2DG471900 Rh3BG270800
rosa_wichuraiana	Rw2G036770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
Acc65I	GGTACC	2 cut(s)	232, 793
AccB1I	GGYRCC	2 cut(s)	232, 793
AccBSI	CCGCTC	1 cut(s)	27
AccII	CGCG	1 cut(s)	349
AciI	CCGC	6 cut(s)	22, 25, 140, 164, 170, 349
AclWI	GGATC	1 cut(s)	841
AcoI	YGGCCR	2 cut(s)	141, 871
AfaI	GTAC	4 cut(s)	234, 244, 353, 795
AfiI	CCNNNNNNNGG	8 cut(s)	31, 236, 261, 341, 348, 561, 810, 811
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	6 cut(s)	46, 197, 313, 714, 739, 968
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	9 cut(s)	40, 284, 319, 497, 627, 638, 782, 808, 820
AluI	AGCT	9 cut(s)	40, 284, 319, 497, 627, 638, 782, 808, 820
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	841
AoxI	GGCC	3 cut(s)	6, 141, 871
ApeKI	GCWGC	2 cut(s)	617, 820
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
Asp700I	GAANNNNTTC	1 cut(s)	41
Asp718I	GGTACC	2 cut(s)	232, 793
AspS9I	GGNCC	2 cut(s)	549, 861
AsuC2I	CCSGG	2 cut(s)	237, 343
AsuHPI	GGTGA	3 cut(s)	242, 371, 658
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	2 cut(s)	549, 861
BaeI	ACNNNNGTAYC	2 cut(s)	343, 376
BanI	GGYRCC	2 cut(s)	232, 793
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	629, 807
BccI	CCATC	5 cut(s)	17, 343, 455, 761, 839
BceAI	ACGGC	2 cut(s)	188, 202
BciVI	GTATCC	1 cut(s)	965
BcnI	CCSGG	2 cut(s)	237, 343
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	965
BglII	AGATCT	2 cut(s)	147, 1001
BisI	GCNGC	6 cut(s)	22, 25, 141, 171, 618, 821
BlsI	GCNGC	6 cut(s)	23, 26, 142, 172, 619, 822
Bme1390I	CCNGG	2 cut(s)	237, 343
Bme18I	GGWCC	2 cut(s)	549, 861
BmgT120I	GGNCC	2 cut(s)	549, 861
BmiI	GGNNCC	7 cut(s)	84, 228, 234, 550, 551, 795, 884
BmrFI	CCNGG	2 cut(s)	237, 343
BmsI	GCATC	3 cut(s)	24, 475, 913
BpiI	GAAGAC	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	809
Bpu14I	TTCGAA	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	607, 762
BpuMI	CCSGG	2 cut(s)	237, 343
BsaJI	CCNNGG	2 cut(s)	3, 411
BsaWI	WCCGGW	2 cut(s)	229, 356
Bsc4I	CCNNNNNNNGG	8 cut(s)	31, 236, 261, 341, 348, 561, 810, 811
Bse118I	RCCGGY	1 cut(s)	873
Bse1I	ACTGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	3, 411
BseGI	GGATG	5 cut(s)	335, 466, 490, 583, 904
BseLI	CCNNNNNNNGG	8 cut(s)	31, 236, 261, 341, 348, 561, 810, 811
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	3 cut(s)	776, 830, 1009
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	629, 807
BseYI	CCCAGC	2 cut(s)	804, 984
Bsh1236I	CGCG	1 cut(s)	349
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	8, 143, 873
BshNI	GGYRCC	2 cut(s)	232, 793
BsiEI	CGRYCG	1 cut(s)	144
BsiSI	CCGG	8 cut(s)	32, 230, 236, 342, 357, 374, 610, 874
BslFI	GGGAC	2 cut(s)	535, 967
BslI	CCNNNNNNNGG	8 cut(s)	31, 236, 261, 341, 348, 561, 810, 811
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	2 cut(s)	535, 967
BsnI	GGCC	3 cut(s)	8, 143, 873
Bsp119I	TTCGAA	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	147, 570, 846, 1001
BspACI	CCGC	6 cut(s)	22, 25, 140, 164, 170, 349
BspANI	GGCC	3 cut(s)	8, 143, 873
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	7 cut(s)	84, 228, 234, 550, 551, 795, 884
BspPI	GGATC	1 cut(s)	841
BspQI	GCTCTTC	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	105
BspT107I	GGYRCC	2 cut(s)	232, 793
BsrBI	CCGCTC	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	873
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	873
BssECI	CCNNGG	2 cut(s)	3, 411
BssMI	GATC	4 cut(s)	147, 570, 846, 1001
BssT1I	CCWWGG	1 cut(s)	411
Bst6I	CTCTTC	2 cut(s)	47, 706
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	29, 615
BstDEI	CTNAG	3 cut(s)	471, 560, 809
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	5 cut(s)	335, 466, 490, 583, 904
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	4 cut(s)	150, 573, 849, 1004
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	4 cut(s)	147, 570, 846, 1001
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 37, 170, 214, 494
BstNSI	RCATGY	1 cut(s)	686
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	235, 341
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	629, 807
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	2 cut(s)	147, 1001
BstYI	RGATCY	2 cut(s)	147, 1001
BstZI	CGGCCG	1 cut(s)	141
BsuI	GTATCC	1 cut(s)	965
BsuRI	GGCC	3 cut(s)	8, 143, 873
BtsCI	GGATG	5 cut(s)	335, 466, 490, 583, 904
Cac8I	GCNNGC	2 cut(s)	29, 615
Cfr10I	RCCGGY	1 cut(s)	873
Cfr13I	GGNCC	2 cut(s)	549, 861
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	4 cut(s)	233, 243, 352, 794
CviAII	CATG	2 cut(s)	62, 683
CviQI	GTAC	4 cut(s)	233, 243, 352, 794
DdeI	CTNAG	3 cut(s)	471, 560, 809
DpnI	GATC	4 cut(s)	149, 572, 848, 1003
DpnII	GATC	4 cut(s)	147, 570, 846, 1001
EaeI	YGGCCR	2 cut(s)	141, 871
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	47, 706
EarI	CTCTTC	2 cut(s)	47, 706
EciI	GGCGGA	1 cut(s)	179
EclXI	CGGCCG	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	549, 861
Eco52I	CGGCCG	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	359
EcoO109I	RGGNCCY	2 cut(s)	549, 861
EcoO65I	GGTNACC	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	2 cut(s)	65, 686
FalI	AAGNNNNNCTT	4 cut(s)	395, 427, 685, 717
FaqI	GGGAC	2 cut(s)	535, 967
FatI	CATG	2 cut(s)	61, 682
Fnu4HI	GCNGC	6 cut(s)	22, 25, 141, 171, 618, 821
FokI	GGATG	5 cut(s)	322, 473, 497, 590, 891
Fsp4HI	GCNGC	6 cut(s)	22, 25, 141, 171, 618, 821
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	6 cut(s)	22, 25, 141, 171, 618, 821
GsaI	CCCAGC	2 cut(s)	808, 988
HaeIII	GGCC	3 cut(s)	8, 143, 873
HapII	CCGG	8 cut(s)	32, 230, 236, 342, 357, 374, 610, 874
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	65, 686
HinfI	GANTC	9 cut(s)	49, 95, 107, 122, 133, 181, 259, 775, 800
HpaII	CCGG	8 cut(s)	32, 230, 236, 342, 357, 374, 610, 874
HphI	GGTGA	3 cut(s)	242, 371, 658
Hpy188I	TCNGA	6 cut(s)	121, 190, 295, 537, 633, 838
Hpy188III	TCNNGA	7 cut(s)	46, 53, 86, 156, 212, 880, 908
Hpy99I	CGWCG	2 cut(s)	223, 935
HpyAV	CCTTC	2 cut(s)	643, 962
HpyCH4V	TGCA	2 cut(s)	421, 448
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 37, 170, 214, 494
HpyF3I	CTNAG	3 cut(s)	471, 560, 809
Hsp92II	CATG	2 cut(s)	65, 686
KflI	GGGWCCC	1 cut(s)	549
KpnI	GGTACC	2 cut(s)	236, 797
Kzo9I	GATC	4 cut(s)	147, 570, 846, 1001
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	2 cut(s)	817, 882
Lsp1109I	GCAGC	2 cut(s)	629, 807
LweI	GCATC	3 cut(s)	24, 475, 913
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	359, 678
MalI	GATC	4 cut(s)	149, 572, 848, 1003
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	4 cut(s)	147, 570, 846, 1001
MboII	GAAGA	5 cut(s)	34, 415, 550, 604, 693
MflI	RGATCY	2 cut(s)	147, 1001
MluCI	AATT	6 cut(s)	246, 274, 392, 449, 454, 1006
MlyI	GAGTC	4 cut(s)	89, 131, 253, 769
MmeI	TCCRAC	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	3 cut(s)	453, 543, 747
MslI	CAYNNNNRTG	1 cut(s)	687
MspI	CCGG	8 cut(s)	32, 230, 236, 342, 357, 374, 610, 874
MspR9I	CCNGG	2 cut(s)	237, 343
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	5 cut(s)	21, 37, 170, 214, 494
NciI	CCSGG	2 cut(s)	237, 343
NdeII	GATC	4 cut(s)	147, 570, 846, 1001
NlaIII	CATG	2 cut(s)	65, 686
NlaIV	GGNNCC	7 cut(s)	84, 228, 234, 550, 551, 795, 884
NmeAIII	GCCGAG	2 cut(s)	28, 169
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	686
NspV	TTCGAA	1 cut(s)	105
PciI	ACATGT	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	5 cut(s)	49, 107, 133, 181, 800
PkrI	GCNGC	6 cut(s)	23, 26, 142, 172, 619, 822
PleI	GAGTC	4 cut(s)	89, 130, 253, 769
PpsI	GAGTC	4 cut(s)	89, 130, 253, 769
PpuMI	RGGWCCY	2 cut(s)	549, 861
PscI	ACATGT	1 cut(s)	682
PsiI	TTATAA	1 cut(s)	300
Psp5II	RGGWCCY	2 cut(s)	549, 861
PspEI	GGTNACC	1 cut(s)	359
PspFI	CCCAGC	2 cut(s)	804, 984
PspN4I	GGNNCC	7 cut(s)	84, 228, 234, 550, 551, 795, 884
PspPI	GGNCC	2 cut(s)	549, 861
PspPPI	RGGWCCY	2 cut(s)	549, 861
PsuI	RGATCY	2 cut(s)	147, 1001
RsaI	GTAC	4 cut(s)	234, 244, 353, 795
RsaNI	GTAC	4 cut(s)	233, 243, 352, 794
RseI	CAYNNNNRTG	1 cut(s)	687
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	453, 543, 747
SatI	GCNGC	6 cut(s)	22, 25, 141, 171, 618, 821
Sau3AI	GATC	4 cut(s)	147, 570, 846, 1001
Sau96I	GGNCC	2 cut(s)	549, 861
SchI	GAGTC	4 cut(s)	89, 131, 253, 769
ScrFI	CCNGG	2 cut(s)	237, 343
SfaNI	GCATC	3 cut(s)	24, 475, 913
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	2 cut(s)	549, 861
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	3 cut(s)	586, 777, 991
SmoI	CTYRAG	3 cut(s)	586, 777, 991
Sse9I	AATT	6 cut(s)	246, 274, 392, 449, 454, 1006
SsiI	CCGC	6 cut(s)	22, 25, 140, 164, 170, 349
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	235, 341
StyI	CCWWGG	1 cut(s)	411
TaqI	TCGA	6 cut(s)	54, 105, 155, 221, 329, 933
TasI	AATT	6 cut(s)	246, 274, 392, 449, 454, 1006
TauI	GCSGC	4 cut(s)	24, 27, 143, 173
TfiI	GAWTC	5 cut(s)	49, 107, 133, 181, 800
Tru1I	TTAA	3 cut(s)	453, 543, 747
Tru9I	TTAA	3 cut(s)	453, 543, 747
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	2 cut(s)	617, 820
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	4 cut(s)	287, 512, 527, 758
TspGWI	ACGGA	1 cut(s)	919
VpaK11BI	GGWCC	2 cut(s)	549, 861
XceI	RCATGY	1 cut(s)	686
XcmI	CCANNNNNNNNNTGG	2 cut(s)	376, 893
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.