Rh3BG270800

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009987
Physical Location & Seq
Reverse (-)
26391144 .. 26391431
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG270800.1

Sequence Viewer

Length: 288 bp
ATGGAGACCGTCAAGGGCCTGGCGATTCAGCTCTTCAACTTCGCCGAGGCCATCAGCATCAGCCGCCGCTCGCCGGAGAAGCTCTTCAAGATTCTCGACTTACATGACGCTTTGCTTGACTTGATTCCCGATATTGACTCTGTTTTCGAATCCAAGCCGTCCGAGTCCATTAGGATTCAGGCGGCCGAGATCTTATCGAGACTGGCGGAGGCGGCGAGGGGGATTCTGTCGGAGTTTGAAAACACAACAGCTTCATCCCAATATCAAATCGAATTTCGAATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

95

Amino Acids

10.66

Weight (kDa)

4.77

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 2 - 86 1.4e-20 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 69
AciI CCGC 5 cut(s) 64, 67, 182, 206, 212
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 2 cut(s) 272, 279
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 37, 88, 239
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 3 cut(s) 31, 82, 251
AluI AGCT 3 cut(s) 31, 82, 251
Alw26I GTCTC 1 cut(s) 193
AoxI GGCC 3 cut(s) 16, 48, 183
ApoI RAATTY 2 cut(s) 272, 279
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
Asp700I GAANNNNTTC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 16
AsuII TTCGAA 2 cut(s) 147, 277
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 193
BglII AGATCT 1 cut(s) 189
BisI GCNGC 4 cut(s) 64, 67, 183, 213
BlsI GCNGC 4 cut(s) 65, 68, 184, 214
Bme1390I CCNGG 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 66
Bpu14I TTCGAA 2 cut(s) 147, 277
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 207
BseX3I CGGCCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 18, 50, 185
BsiEI CGRYCG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 193
BsnI GGCC 3 cut(s) 18, 50, 185
Bsp119I TTCGAA 2 cut(s) 147, 277
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 5 cut(s) 64, 67, 182, 206, 212
BspANI GGCC 3 cut(s) 18, 50, 185
BspQI GCTCTTC 2 cut(s) 38, 89
BspT104I TTCGAA 2 cut(s) 147, 277
BsrBI CCGCTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 38, 89
BstBI TTCGAA 2 cut(s) 147, 277
BstC8I GCNNGC 1 cut(s) 71
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 189
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 63, 79, 212
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BstZI CGGCCG 1 cut(s) 183
BsuRI GGCC 3 cut(s) 18, 50, 185
BtsCI GGATG 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 116
CviAII CATG 1 cut(s) 104
CviJI RGCY 8 cut(s) 18, 31, 50, 63, 82, 157, 185, 251
CviKI_1 RGCY 8 cut(s) 18, 31, 50, 63, 82, 157, 185, 251
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 183
EagI CGGCCG 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 38, 89
EarI CTCTTC 2 cut(s) 38, 89
EciI GGCGGA 1 cut(s) 221
EclXI CGGCCG 1 cut(s) 183
Eco52I CGGCCG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 107
FaiI YATR 1 cut(s) 105
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 64, 67, 183, 213
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 4 cut(s) 64, 67, 183, 213
GluI GCNGC 4 cut(s) 64, 67, 183, 213
HaeIII GGCC 3 cut(s) 18, 50, 185
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 107
HinfI GANTC 8 cut(s) 25, 91, 124, 137, 149, 164, 175, 223
HpaII CCGG 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 163, 232
Hpy188III TCNNGA 4 cut(s) 88, 95, 128, 198
HpyCH4III ACNGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 79, 212
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 1 cut(s) 189
LguI GCTCTTC 2 cut(s) 38, 89
LpnPI CCDG 5 cut(s) 5, 32, 87, 164, 188
LweI GCATC 1 cut(s) 66
MalI GATC 1 cut(s) 191
MbiI CCGCTC 1 cut(s) 69
MboI GATC 1 cut(s) 189
MboII GAAGA 2 cut(s) 25, 76
MflI RGATCY 1 cut(s) 189
MluCI AATT 2 cut(s) 272, 279
MlyI GAGTC 2 cut(s) 131, 173
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 3 cut(s) 40, 202, 210
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 1 cut(s) 286
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 63, 79, 212
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 107
NmeAIII GCCGAG 2 cut(s) 70, 211
NspV TTCGAA 2 cut(s) 147, 277
PciSI GCTCTTC 2 cut(s) 38, 89
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 6 cut(s) 25, 91, 124, 149, 175, 223
PkrI GCNGC 4 cut(s) 65, 68, 184, 214
PleI GAGTC 2 cut(s) 131, 172
PpsI GAGTC 2 cut(s) 131, 172
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspPI GGNCC 1 cut(s) 16
PsuI RGATCY 1 cut(s) 189
SapI GCTCTTC 2 cut(s) 38, 89
SaqAI TTAA 1 cut(s) 286
SatI GCNGC 4 cut(s) 64, 67, 183, 213
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 2 cut(s) 131, 173
ScrFI CCNGG 1 cut(s) 20
SetI ASST 3 cut(s) 33, 84, 253
SfaNI GCATC 1 cut(s) 66
SfuI TTCGAA 2 cut(s) 147, 277
Sse9I AATT 2 cut(s) 272, 279
SsiI CCGC 5 cut(s) 64, 67, 182, 206, 212
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 5 cut(s) 96, 147, 197, 270, 277
TasI AATT 2 cut(s) 272, 279
TauI GCSGC 4 cut(s) 66, 69, 185, 215
TfiI GAWTC 6 cut(s) 25, 91, 124, 149, 175, 223
Tru1I TTAA 1 cut(s) 286
Tru9I TTAA 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 243
XapI RAATTY 2 cut(s) 272, 279
XmnI GAANNNNTTC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.