Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004094.1

Orthogroup ID

OG0009987

Physical Location & Seq

Genomic Coordinates Reverse (-)

13852 .. 15035

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004094.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgaggatgatcagggggaggaggagatcacgaaaatgggaaggatcggccgaggggatgccgaaaaatgggttttccggccgggtcaccgatcggtggctgggatgccttcgatccaaggctggaggcagcggcggggcaaggcgacaccggagggcggttggacggcttgcggcgatcacaaaggtgtccgggtccggggccggtggagggccatttagccgggtcgggtcggacgagacccgaggcttccggcggctagggattgagaagctcagcattggcgacgtccagaggcttcagtgggaggagctcgaggccaagatccgaccgtggatacgccccgccaaggcctgcatcaggatcgtcttcgccagcgagaagaagctctgcgagcaaatcttccagggcatcggcaccgccatcgacgacgcctgcttcatggagaccgtcaagggcccggcgattcagctcttcaacttcgccgaggccatcagcatcagccgccgctcgccggagaagctcttcaagattctcgacttacatgacgctttgcttgacttgattcccgatgttgactctgttttcgaatccaagtcgtccgaaattgggtttctgcaattaaaggtgagggactgggttcgatgcttagatcacagaagtaaggtgatagaacttactttgaatttcttggatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

233

Amino Acids

26.06

Weight (kDa)

10.07

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54090 AT1G72470 AT3G14090
fragaria_vesca	FvH4_6g35110
malus_domestica	MD17G1164500.v1.1
prunus_persica	Prupe.3G038000_v2.0.a1 Prupe.3G038000_v2.0.a1
pyrus_communis	pycom09g09710 pycom17g15760
rosa_chinensis	RchiOBHm_Chr2g0146331
rosa_laevigata	RLG00000020194
rosa_multiflora	Rmu_co8454727.1_g000001 Rmu_sc0004094.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100170
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450500 Rh2BG462800 Rh2CG437300 Rh2DG471900 Rh3BG270800
rosa_wichuraiana	Rw2G036770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	510
AciI	CCGC	9 cut(s)	132, 135, 158, 173, 256, 345, 420, 505, 508
AclWI	GGATC	4 cut(s)	52, 108, 319, 371
AcoI	YGGCCR	2 cut(s)	48, 79
AcsI	RAATTY	1 cut(s)	685
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	2 cut(s)	288, 432
AfiI	CCNNNNNNNGG	9 cut(s)	68, 96, 157, 198, 210, 349, 360, 514, 609
AgsI	TTSAA	3 cut(s)	478, 529, 685
AjnI	CCWGG	1 cut(s)	405
AleI	CACNNNNGTG	1 cut(s)	185
AluBI	AGCT	6 cut(s)	274, 313, 388, 472, 523, 699
AluI	AGCT	6 cut(s)	274, 313, 388, 472, 523, 699
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	233, 440
AlwI	GGATC	4 cut(s)	52, 108, 319, 371
Ama87I	CYCGRG	2 cut(s)	243, 314
AoxI	GGCC	8 cut(s)	48, 79, 201, 212, 318, 351, 457, 489
ApaI	GGGCCC	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	1 cut(s)	685
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	5 cut(s)	195, 201, 212, 457, 458
AsuC2I	CCSGG	5 cut(s)	83, 193, 199, 224, 461
AsuHPI	GGTGA	3 cut(s)	79, 640, 679
AsuII	TTCGAA	1 cut(s)	588
AvaI	CYCGRG	2 cut(s)	243, 314
AvaII	GGWCC	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	2 cut(s)	315, 461
BbsI	GAAGAC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	2 cut(s)	431, 500
BceAI	ACGGC	1 cut(s)	182
BcgI	CGANNNNNNTGC	4 cut(s)	346, 380, 406, 440
BciT130I	CCWGG	1 cut(s)	407
BciVI	GTATCC	1 cut(s)	330
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	5 cut(s)	83, 193, 199, 224, 461
BcoDI	GTCTC	2 cut(s)	233, 440
BfaI	CTAG	2 cut(s)	260, 700
BfuI	GTATCC	1 cut(s)	330
BisI	GCNGC	6 cut(s)	130, 133, 174, 257, 505, 508
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	6 cut(s)	131, 134, 175, 258, 506, 509
Bme1390I	CCNGG	6 cut(s)	83, 193, 199, 224, 407, 461
Bme18I	GGWCC	1 cut(s)	195
BmeT110I	CYCGRG	2 cut(s)	243, 314
BmgT120I	GGNCC	5 cut(s)	195, 201, 212, 457, 458
BmiI	GGNNCC	4 cut(s)	196, 202, 418, 459
BmrFI	CCNGG	6 cut(s)	83, 193, 199, 224, 407, 461
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	6 cut(s)	48, 95, 366, 420, 507, 635
BmuI	ACTGGG	1 cut(s)	646
BpiI	GAAGAC	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	588
BpuMI	CCSGG	5 cut(s)	83, 193, 199, 224, 461
BsaHI	GRCGYC	2 cut(s)	288, 432
BsaI	GGTCTC	2 cut(s)	233, 440
BsaJI	CCNNGG	8 cut(s)	51, 117, 198, 244, 332, 348, 406, 486
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	9 cut(s)	68, 96, 157, 198, 210, 349, 360, 514, 609
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	641
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	8 cut(s)	51, 117, 198, 244, 332, 348, 406, 486
BseGI	GGATG	3 cut(s)	12, 63, 110
BseLI	CCNNNNNNNGG	9 cut(s)	68, 96, 157, 198, 210, 349, 360, 514, 609
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	3 cut(s)	34, 37, 323
BseSI	GKGCMC	1 cut(s)	461
BseX3I	CGGCCG	2 cut(s)	48, 79
BseXI	GCAGC	1 cut(s)	141
BseYI	CCCAGC	1 cut(s)	100
Bsh1285I	CGRYCG	4 cut(s)	51, 82, 94, 332
BshFI	GGCC	8 cut(s)	50, 81, 203, 214, 320, 353, 459, 491
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	4 cut(s)	51, 82, 94, 332
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	2 cut(s)	243, 314
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	9 cut(s)	68, 96, 157, 198, 210, 349, 360, 514, 609
BsmAI	GTCTC	2 cut(s)	233, 440
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	8 cut(s)	50, 81, 203, 214, 320, 353, 459, 491
Bso31I	GGTCTC	2 cut(s)	233, 440
BsoBI	CYCGRG	2 cut(s)	243, 314
Bsp119I	TTCGAA	1 cut(s)	588
Bsp120I	GGGCCC	1 cut(s)	457
Bsp1286I	GDGCHC	2 cut(s)	315, 461
Bsp143I	GATC	9 cut(s)	9, 26, 44, 91, 113, 177, 324, 363, 652
Bsp1720I	GCTNAGC	1 cut(s)	275
BspACI	CCGC	9 cut(s)	132, 135, 158, 173, 256, 345, 420, 505, 508
BspANI	GGCC	8 cut(s)	50, 81, 203, 214, 320, 353, 459, 491
BspCNI	CTCAG	1 cut(s)	288
BspLI	GGNNCC	4 cut(s)	196, 202, 418, 459
BspPI	GGATC	4 cut(s)	52, 108, 319, 371
BspQI	GCTCTTC	2 cut(s)	479, 530
BspT104I	TTCGAA	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	2 cut(s)	233, 440
BsrBI	CCGCTC	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	641
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	8 cut(s)	51, 117, 198, 244, 332, 348, 406, 486
BssMI	GATC	9 cut(s)	9, 26, 44, 91, 113, 177, 324, 363, 652
BssNI	GRCGYC	2 cut(s)	288, 432
BssT1I	CCWWGG	2 cut(s)	117, 348
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	333, 451
Bst6I	CTCTTC	2 cut(s)	479, 530
BstACI	GRCGYC	2 cut(s)	288, 432
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	6 cut(s)	171, 355, 376, 395, 436, 512
BstDEI	CTNAG	2 cut(s)	275, 649
BstDSI	CCRYGG	1 cut(s)	332
BstEII	GGTNACC	1 cut(s)	85
BstENI	CCTNNNNNAGG	1 cut(s)	358
BstF5I	GGATG	3 cut(s)	12, 63, 110
BstKTI	GATC	9 cut(s)	12, 29, 47, 94, 116, 180, 327, 366, 655
BstMAI	GTCTC	2 cut(s)	233, 440
BstMBI	GATC	9 cut(s)	9, 26, 44, 91, 113, 177, 324, 363, 652
BstMCI	CGRYCG	4 cut(s)	51, 82, 94, 332
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 504, 520
BstNI	CCWGG	1 cut(s)	407
BstPI	GGTNACC	1 cut(s)	85
BstSCI	CCNGG	6 cut(s)	81, 191, 197, 222, 405, 459
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BstZI	CGGCCG	2 cut(s)	48, 79
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	8 cut(s)	50, 81, 203, 214, 320, 353, 459, 491
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	12, 63, 110
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	6 cut(s)	171, 355, 376, 395, 436, 512
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	5 cut(s)	195, 201, 212, 457, 458
CseI	GACGC	2 cut(s)	440, 557
CviAII	CATG	2 cut(s)	442, 545
DdeI	CTNAG	2 cut(s)	275, 649
DpnI	GATC	9 cut(s)	11, 28, 46, 93, 115, 179, 326, 365, 654
DpnII	GATC	9 cut(s)	9, 26, 44, 91, 113, 177, 324, 363, 652
EaeI	YGGCCR	2 cut(s)	48, 79
EagI	CGGCCG	2 cut(s)	48, 79
Eam1104I	CTCTTC	2 cut(s)	479, 530
EarI	CTCTTC	2 cut(s)	479, 530
Ecl136II	GAGCTC	1 cut(s)	313
EclXI	CGGCCG	2 cut(s)	48, 79
Eco130I	CCWWGG	2 cut(s)	117, 348
Eco147I	AGGCCT	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	315, 461
Eco31I	GGTCTC	2 cut(s)	233, 440
Eco47I	GGWCC	1 cut(s)	195
Eco52I	CGGCCG	2 cut(s)	48, 79
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	2 cut(s)	243, 314
Eco91I	GGTNACC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	313
EcoNI	CCTNNNNNAGG	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	457
EcoO65I	GGTNACC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	117, 348
EcoT38I	GRGCYC	2 cut(s)	315, 461
ErhI	CCWWGG	2 cut(s)	117, 348
FaeI	CATG	2 cut(s)	445, 548
FaiI	YATR	2 cut(s)	443, 546
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	2 cut(s)	441, 544
FauI	CCCGC	2 cut(s)	128, 352
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	6 cut(s)	130, 133, 174, 257, 505, 508
FokI	GGATG	3 cut(s)	19, 70, 117
FriOI	GRGCYC	2 cut(s)	315, 461
Fsp4HI	GCNGC	6 cut(s)	130, 133, 174, 257, 505, 508
FspBI	CTAG	2 cut(s)	260, 700
GluI	GCNGC	6 cut(s)	130, 133, 174, 257, 505, 508
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	8 cut(s)	50, 81, 203, 214, 320, 353, 459, 491
HgaI	GACGC	2 cut(s)	440, 557
Hin1I	GRCGYC	2 cut(s)	288, 432
Hin1II	CATG	2 cut(s)	445, 548
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	5 cut(s)	466, 532, 565, 578, 590
HphI	GGTGA	3 cut(s)	79, 640, 679
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	3 cut(s)	235, 329, 604
Hpy188III	TCNNGA	6 cut(s)	30, 292, 361, 529, 536, 569
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	3 cut(s)	290, 431, 434
HpyAV	CCTTC	2 cut(s)	35, 119
HpyCH4III	ACNGT	2 cut(s)	333, 451
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	357, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 504, 520
HpyF3I	CTNAG	2 cut(s)	275, 649
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	2 cut(s)	288, 432
Hsp92II	CATG	2 cut(s)	445, 548
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	9 cut(s)	9, 26, 44, 91, 113, 177, 324, 363, 652
LguI	GCTCTTC	2 cut(s)	479, 530
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	6 cut(s)	48, 95, 366, 420, 507, 635
MaeI	CTAG	2 cut(s)	260, 700
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	9 cut(s)	11, 28, 46, 93, 115, 179, 326, 365, 654
MbiI	CCGCTC	1 cut(s)	510
MboI	GATC	9 cut(s)	9, 26, 44, 91, 113, 177, 324, 363, 652
MboII	GAAGA	5 cut(s)	361, 394, 394, 466, 517
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	315, 461
MluCI	AATT	3 cut(s)	606, 620, 685
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	3 cut(s)	142, 213, 352
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	1 cut(s)	623
MslI	CAYNNNNRTG	2 cut(s)	34, 185
MspA1I	CMGCKG	1 cut(s)	132
MspR9I	CCNGG	6 cut(s)	83, 193, 199, 224, 407, 461
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	394, 504, 520
NciI	CCSGG	5 cut(s)	83, 193, 199, 224, 461
NdeII	GATC	9 cut(s)	9, 26, 44, 91, 113, 177, 324, 363, 652
NlaIII	CATG	2 cut(s)	445, 548
NlaIV	GGNNCC	4 cut(s)	196, 202, 418, 459
NmeAIII	GCCGAG	2 cut(s)	76, 511
NmuCI	GTSAC	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	588
OliI	CACNNNNGTG	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	353
PciSI	GCTCTTC	2 cut(s)	479, 530
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	4 cut(s)	466, 532, 565, 590
PkrI	GCNGC	6 cut(s)	131, 134, 175, 258, 506, 509
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	405
PspEI	GGTNACC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	196, 202, 418, 459
PspOMI	GGGCCC	1 cut(s)	457
PspPI	GGNCC	5 cut(s)	195, 201, 212, 457, 458
PspXI	VCTCGAGB	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	324
PvuI	CGATCG	1 cut(s)	94
RseI	CAYNNNNRTG	2 cut(s)	34, 185
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	2 cut(s)	479, 530
SaqAI	TTAA	1 cut(s)	623
SatI	GCNGC	6 cut(s)	130, 133, 174, 257, 505, 508
Sau3AI	GATC	9 cut(s)	9, 26, 44, 91, 113, 177, 324, 363, 652
Sau96I	GGNCC	5 cut(s)	195, 201, 212, 457, 458
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	6 cut(s)	83, 193, 199, 224, 407, 461
SduI	GDGCHC	2 cut(s)	315, 461
SfaNI	GCATC	6 cut(s)	48, 95, 366, 420, 507, 635
Sfr274I	CTCGAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	588
SinI	GGWCC	1 cut(s)	195
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	34, 185
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	3 cut(s)	606, 620, 685
SseBI	AGGCCT	1 cut(s)	353
SsiI	CCGC	9 cut(s)	132, 135, 158, 173, 256, 345, 420, 505, 508
SspMI	CTAG	2 cut(s)	260, 700
SstI	GAGCTC	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	6 cut(s)	81, 191, 197, 222, 405, 459
StyI	CCWWGG	2 cut(s)	117, 348
TaaI	ACNGT	2 cut(s)	333, 451
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	6 cut(s)	112, 315, 426, 537, 588, 643
TasI	AATT	3 cut(s)	606, 620, 685
TauI	GCSGC	5 cut(s)	135, 176, 259, 507, 510
TfiI	GAWTC	4 cut(s)	466, 532, 565, 590
Tru1I	TTAA	1 cut(s)	623
Tru9I	TTAA	1 cut(s)	623
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	430
TspRI	CASTG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	685
XhoI	CTCGAG	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	2 cut(s)	260, 700
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.