AT1G72480

Lung seven transmembrane receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016015
Physical Location & Seq
Reverse (-)
27285999 .. 27288522
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72480.1

Sequence Viewer

Length: 1530 bp
ATGTTGCTCCATCTTCTTCTTCTGCTATGTCTATCTTCTTCTTTGAAAGTTCAAGCATCGGTGCATGAGTACCGAAGCGAGAGATTCGTGTCTAAAGGTAACGCCTTTGTCTTCCATGGTGGCAGTGAAGGCATCTACTCCTCTTCTCCCTCCGATAACTTCACTTCCGACTCCGATTCCGTTTCCTTTATCCGGTTTGAGAAGATCAAGTTTCAGAGGCCTGAGGAAGTGTCTAACCGATCCTCGTTATCTATCCATGCCGTGGTTTTCGAGGTAGAGGACCGGGAAAACATTGGAGGATCTGCTTATGGTGGGCAAAGAGCTGTGTGTTGCACATCTGATCTGGCAAAACTCGGTGTTTGCTCACACGGAGATGTCATTTACCGTCCTTCTGCTAAAGATTCTGGTTGGCCACAAGTGTTTGGTGTCTCGTTGGCTGAGAATGAGTTTTCTGTTATACTGCCTACAAGATCGATCCAGGTCACTAGGACCGGGATGTACAACCTCTACTTCATTCATTGTGATTCTGATCTCAAGGATTTGGTTGTTGAAGGGAAGACCATTTGGAAAAACCCTACTGGATATCTACCTGGTAGAATGGCTCCATTGATGTACTTTTACGGGTTCATGTCGCTTGCTTTTGTGTTGCTTGGCATCTTCTGGTTTTCTCAGTGTGCTAGATTCTGGAGAGAAGTGCTTCCGTTGCAAAATTGCTTAACTCTGGTGATAACATTGGGGATGTGTGAGATGGCACTTTGGTATTTTGATTACGCTGAATTCAATGAGACTGGGATTAGGCCAACCGTGATCACCATCTGGGCAGTCACGTTCGGTTCTATCAAGCGTACGAGTGCTCGTATTATCATCTTGATGGTTTCAATGGGCTACGGTGTTGTGAGACCTACGCTCGGGGGATTCACATCAAAGGTTATCATGCTTGGGGTCACCTTCTTTATTGCATCTGAAATTCTTGAGCTGATGGAAAATGTGGGTGCTGTCAGTGATCTCTCAGGGAAAGCTCGACTGTTTTTCGTTCTTCCTGTTGCAATATTGGATGCGTTCTTCATCATATGGATATTCAAATCTCTCTCTGCTACTTTCAAGAAGCTTCAGACCAGAAGGTTGTTGGTCAAGTTGGATATATACAGAAAATTCACAAATGCTTTGGCTGTAGACATATTGGTTTCCTTAGGTTGGATTTGCTACGAGCTTTATTTCAAGTCGAAGGATGTTTACAACGAACATTGGCAAAACGCTTGGATCATCCCAGCCTTTTGGCAACTGCTATCCTTCTCGCTCCTAATTGTTATCTGCTCTCTCTGGGCTCCATCTCAGAACTCGACTAGGTACGCATTCTCTGGATCTTCTGGAGATACAAGCGCAGAGTTTGAGAAGGACGATTACACGCTAACCCTCATTAAACCATCTCCAATTCCTTCTCATGAAGTCAAGAACCTCTCAGAAACCAGACTTTTACCAGCTGATGAAGGAGAACCAGAAAAAGATTTGGAGGAAGACAAAAGGGAGTAA

Protein Analysis

509

Amino Acids

57.44

Weight (kDa)

5.99

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 202 - 447 1.1e-93 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72480
fragaria_vesca FvH4_6g35090
malus_domestica MD09G1178800.v1.1 MD17G1164600.v1.1
prunus_persica Prupe.3G038100_v2.0.a1
pyrus_communis pycom09g09720 pycom17g15770
rosa_chinensis RchiOBHm_Chr2g0146271
rosa_laevigata RLG00000020191
rosa_multiflora Rmu_sc0002054.1_g000015
rosa_roxburghii Rroxscaffold_2G00100190
rosa_rugosa Rorug02G0394100
rosa_samantha Rh2BG462500 Rh2DG471700
rosa_wichuraiana Rw2G036750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AccI GTMKAC 1 cut(s) 1173
AclWI GGATC 5 cut(s) 234, 307, 469, 1268, 1369
AcoI YGGCCR 1 cut(s) 410
AcsI RAATTY 3 cut(s) 776, 966, 1151
AcuI CTGAAG 1 cut(s) 1094
AfaI GTAC 5 cut(s) 71, 500, 614, 847, 1349
AfiI CCNNNNNNNGG 4 cut(s) 192, 262, 908, 1194
AgsI TTSAA 8 cut(s) 46, 53, 551, 781, 879, 1081, 1102, 1219
AjnI CCWGG 2 cut(s) 477, 589
AluBI AGCT 6 cut(s) 323, 976, 1019, 1108, 1210, 1481
AluI AGCT 6 cut(s) 323, 976, 1019, 1108, 1210, 1481
Alw21I GWGCWC 1 cut(s) 856
Alw26I GTCTC 3 cut(s) 433, 779, 892
AlwI GGATC 5 cut(s) 234, 307, 469, 1268, 1369
Ama87I CYCGRG 1 cut(s) 908
AoxI GGCC 3 cut(s) 218, 410, 797
ApoI RAATTY 3 cut(s) 776, 966, 1151
Asp700I GAANNNNTTC 1 cut(s) 696
AspLEI GCGC 1 cut(s) 1382
AspS9I GGNCC 2 cut(s) 280, 489
AsuC2I CCSGG 2 cut(s) 284, 493
AsuHPI GGTGA 3 cut(s) 736, 802, 937
AvaI CYCGRG 1 cut(s) 908
AvaII GGWCC 2 cut(s) 280, 489
AxyI CCTNAGG 2 cut(s) 222, 1189
BalI TGGCCA 1 cut(s) 412
BanII GRGCYC 1 cut(s) 1327
BarI GAAGNNNNNNTAC 4 cut(s) 1217, 1249, 1385, 1417
BbsI GAAGAC 3 cut(s) 103, 563, 1521
Bbv12I GWGCWC 1 cut(s) 856
BccI CCATC 7 cut(s) 18, 742, 821, 865, 973, 1336, 1432
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 479, 591
BclI TGATCA 1 cut(s) 807
BcnI CCSGG 2 cut(s) 284, 493
BcoDI GTCTC 3 cut(s) 433, 779, 892
BfaI CTAG 3 cut(s) 486, 678, 1344
BfmI CTRYAG 1 cut(s) 1170
Bme1390I CCNGG 4 cut(s) 284, 479, 493, 591
Bme18I GGWCC 2 cut(s) 280, 489
BmeT110I CYCGRG 1 cut(s) 908
BmgT120I GGNCC 2 cut(s) 280, 489
BmiI GGNNCC 2 cut(s) 603, 1326
BmrFI CCNGG 4 cut(s) 284, 479, 493, 591
BmrI ACTGGG 1 cut(s) 798
BmsI GCATC 5 cut(s) 65, 141, 663, 968, 1045
BmuI ACTGGG 1 cut(s) 798
BpiI GAAGAC 3 cut(s) 103, 563, 1521
BpmI CTGGAG 2 cut(s) 706, 1389
BpuEI CTTGAG 2 cut(s) 518, 992
BpuMI CCSGG 2 cut(s) 284, 493
Bsa29I ATCGAT 1 cut(s) 473
BsaBI GATNNNNATC 3 cut(s) 528, 812, 919
BsaI GGTCTC 1 cut(s) 892
BsaJI CCNNGG 2 cut(s) 115, 261
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 262, 908, 1194
Bse1I ACTGG 2 cut(s) 583, 793
Bse21I CCTNAGG 2 cut(s) 222, 1189
Bse8I GATNNNNATC 3 cut(s) 528, 812, 919
BseBI CCWGG 2 cut(s) 479, 591
BseCI ATCGAT 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 115, 261
BseGI GGATG 5 cut(s) 501, 744, 1060, 1234, 1263
BseJI GATNNNNATC 3 cut(s) 528, 812, 919
BseLI CCNNNNNNNGG 4 cut(s) 192, 262, 908, 1194
BseMII CTCAG 6 cut(s) 213, 429, 683, 1023, 1346, 1473
BseNI ACTGG 2 cut(s) 583, 793
BseRI GAGGAG 1 cut(s) 130
BseYI CCCAGC 1 cut(s) 1267
BshFI GGCC 3 cut(s) 220, 412, 799
BshVI ATCGAT 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 856
BsiHKCI CYCGRG 1 cut(s) 908
BsiSI CCGG 3 cut(s) 193, 283, 492
BsiWI CGTACG 1 cut(s) 845
BslI CCNNNNNNNGG 4 cut(s) 192, 262, 908, 1194
BsmAI GTCTC 3 cut(s) 433, 779, 892
BsmI GAATGC 1 cut(s) 1352
BsnI GGCC 3 cut(s) 220, 412, 799
Bso31I GGTCTC 1 cut(s) 892
BsoBI CYCGRG 1 cut(s) 908
Bsp1286I GDGCHC 2 cut(s) 856, 1327
Bsp1407I TGTACA 1 cut(s) 498
Bsp19I CCATGG 1 cut(s) 115
BspANI GGCC 3 cut(s) 220, 412, 799
BspCNI CTCAG 6 cut(s) 214, 430, 682, 1022, 1345, 1472
BspDI ATCGAT 1 cut(s) 473
BspHI TCATGA 1 cut(s) 1441
BspLI GGNNCC 2 cut(s) 603, 1326
BspPI GGATC 5 cut(s) 234, 307, 469, 1268, 1369
BspTNI GGTCTC 1 cut(s) 892
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 2 cut(s) 583, 793
BssECI CCNNGG 2 cut(s) 115, 261
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 479, 591
Bst4CI ACNGT 4 cut(s) 386, 805, 890, 1026
Bst6I CTCTTC 1 cut(s) 148
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 7 cut(s) 222, 438, 669, 1009, 1189, 1332, 1459
BstDSI CCRYGG 2 cut(s) 115, 261
BstEII GGTNACC 1 cut(s) 943
BstF5I GGATG 5 cut(s) 501, 744, 1060, 1234, 1263
BstHHI GCGC 1 cut(s) 1382
BstMAI GTCTC 3 cut(s) 433, 779, 892
BstMWI GCNNNNNNNGC 2 cut(s) 129, 703
BstNI CCWGG 2 cut(s) 479, 591
BstPI GGTNACC 1 cut(s) 943
BstSCI CCNGG 4 cut(s) 282, 477, 491, 589
BstSFI CTRYAG 1 cut(s) 1170
BstV2I GAAGAC 3 cut(s) 103, 563, 1521
BstX2I RGATCY 2 cut(s) 299, 1361
BstXI CCANNNNNNTGG 1 cut(s) 1275
BstYI RGATCY 2 cut(s) 299, 1361
Bsu15I ATCGAT 1 cut(s) 473
Bsu36I CCTNAGG 2 cut(s) 222, 1189
BsuRI GGCC 3 cut(s) 220, 412, 799
BsuTUI ATCGAT 1 cut(s) 473
BtgI CCRYGG 2 cut(s) 115, 261
BtsCI GGATG 5 cut(s) 501, 744, 1060, 1234, 1263
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 3 cut(s) 130, 677, 1006
Cac8I GCNNGC 1 cut(s) 636
CciI TCATGA 1 cut(s) 1441
CfoI GCGC 1 cut(s) 1382
Cfr13I GGNCC 2 cut(s) 280, 489
ClaI ATCGAT 1 cut(s) 473
CsiI ACCWGGT 1 cut(s) 589
Csp6I GTAC 5 cut(s) 70, 499, 613, 846, 1348
CviAII CATG 6 cut(s) 65, 116, 257, 628, 934, 1442
CviQI GTAC 5 cut(s) 70, 499, 613, 846, 1348
DdeI CTNAG 7 cut(s) 222, 438, 669, 1009, 1189, 1332, 1459
EaeI YGGCCR 1 cut(s) 410
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 1327
Eco31I GGTCTC 1 cut(s) 892
Eco32I GATATC 1 cut(s) 584
Eco47I GGWCC 2 cut(s) 280, 489
Eco57I CTGAAG 1 cut(s) 1094
Eco81I CCTNAGG 2 cut(s) 222, 1189
Eco88I CYCGRG 1 cut(s) 908
Eco91I GGTNACC 1 cut(s) 943
EcoO65I GGTNACC 1 cut(s) 943
EcoRI GAATTC 1 cut(s) 776
EcoRII CCWGG 2 cut(s) 477, 589
EcoRV GATATC 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 1327
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 6 cut(s) 68, 119, 260, 631, 937, 1445
FatI CATG 6 cut(s) 64, 115, 256, 627, 933, 1441
FauNDI CATATG 1 cut(s) 1070
FbaI TGATCA 1 cut(s) 807
FblI GTMKAC 1 cut(s) 1173
FokI GGATG 5 cut(s) 508, 751, 1067, 1241, 1250
FriOI GRGCYC 1 cut(s) 1327
FspBI CTAG 3 cut(s) 486, 678, 1344
GlaI GCGC 1 cut(s) 1381
GsaI CCCAGC 1 cut(s) 1271
GsuI CTGGAG 2 cut(s) 706, 1389
HaeIII GGCC 3 cut(s) 220, 412, 799
HapII CCGG 3 cut(s) 193, 283, 492
HhaI GCGC 1 cut(s) 1382
Hin1II CATG 6 cut(s) 68, 119, 260, 631, 937, 1445
Hin6I GCGC 1 cut(s) 1380
HinP1I GCGC 1 cut(s) 1380
HindIII AAGCTT 1 cut(s) 1106
HinfI GANTC 7 cut(s) 84, 170, 176, 401, 524, 681, 915
HpaII CCGG 3 cut(s) 193, 283, 492
HphI GGTGA 3 cut(s) 736, 802, 937
Hpy166II GTNNAC 2 cut(s) 1174, 1234
Hpy188III TCNNGA 8 cut(s) 685, 868, 971, 1102, 1359, 1368, 1442, 1450
Hpy8I GTNNAC 2 cut(s) 1174, 1234
HpyCH4III ACNGT 4 cut(s) 386, 805, 890, 1026
HpyCH4IV ACGT 1 cut(s) 827
HpyCH4V TGCA 5 cut(s) 64, 333, 706, 959, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 703
HpyF3I CTNAG 7 cut(s) 222, 438, 669, 1009, 1189, 1332, 1459
HpySE526I ACGT 1 cut(s) 827
Hsp92II CATG 6 cut(s) 68, 119, 260, 631, 937, 1445
HspAI GCGC 1 cut(s) 1380
Ksp22I TGATCA 1 cut(s) 807
LmnI GCTCC 4 cut(s) 12, 607, 1302, 1330
LweI GCATC 5 cut(s) 65, 141, 663, 968, 1045
MabI ACCWGGT 1 cut(s) 589
MaeI CTAG 3 cut(s) 486, 678, 1344
MaeII ACGT 1 cut(s) 827
MaeIII GTNAC 4 cut(s) 98, 481, 823, 943
MflI RGATCY 2 cut(s) 299, 1361
MhlI GDGCHC 2 cut(s) 856, 1327
MlsI TGGCCA 1 cut(s) 412
MluCI AATT 6 cut(s) 709, 776, 966, 1151, 1302, 1431
MluNI TGGCCA 1 cut(s) 412
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 3 cut(s) 192, 1116, 1175
Mox20I TGGCCA 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 696
MscI TGGCCA 1 cut(s) 412
MseI TTAA 2 cut(s) 716, 1419
MslI CAYNNNNRTG 2 cut(s) 372, 869
Msp20I TGGCCA 1 cut(s) 412
MspA1I CMGCKG 1 cut(s) 1481
MspI CCGG 3 cut(s) 193, 283, 492
MspR9I CCNGG 4 cut(s) 284, 479, 493, 591
Mva1269I GAATGC 1 cut(s) 1352
MvaI CCWGG 2 cut(s) 479, 591
MwoI GCNNNNNNNGC 2 cut(s) 129, 703
NciI CCSGG 2 cut(s) 284, 493
NcoI CCATGG 1 cut(s) 115
NdeI CATATG 1 cut(s) 1070
NlaIII CATG 6 cut(s) 68, 119, 260, 631, 937, 1445
NlaIV GGNNCC 2 cut(s) 603, 1326
NmuCI GTSAC 3 cut(s) 481, 823, 943
PagI TCATGA 1 cut(s) 1441
PceI AGGCCT 1 cut(s) 220
PctI GAATGC 1 cut(s) 1352
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 6 cut(s) 84, 176, 401, 524, 681, 915
Pfl23II CGTACG 1 cut(s) 845
PflMI CCANNNNNTGG 1 cut(s) 262
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 477, 589
PspEI GGTNACC 1 cut(s) 943
PspFI CCCAGC 1 cut(s) 1267
PspGI CCWGG 2 cut(s) 477, 589
PspLI CGTACG 1 cut(s) 845
PspN4I GGNNCC 2 cut(s) 603, 1326
PspPI GGNCC 2 cut(s) 280, 489
PsuI RGATCY 2 cut(s) 299, 1361
PvuII CAGCTG 1 cut(s) 1481
RsaI GTAC 5 cut(s) 71, 500, 614, 847, 1349
RsaNI GTAC 5 cut(s) 70, 499, 613, 846, 1348
RseI CAYNNNNRTG 2 cut(s) 372, 869
SaqAI TTAA 2 cut(s) 716, 1419
Sau96I GGNCC 2 cut(s) 280, 489
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 4 cut(s) 284, 479, 493, 591
SduI GDGCHC 2 cut(s) 856, 1327
SexAI ACCWGGT 1 cut(s) 589
SfaNI GCATC 5 cut(s) 65, 141, 663, 968, 1045
SfcI CTRYAG 1 cut(s) 1170
SinI GGWCC 2 cut(s) 280, 489
SmiMI CAYNNNNRTG 2 cut(s) 372, 869
SmlI CTYRAG 2 cut(s) 533, 971
SmoI CTYRAG 2 cut(s) 533, 971
Sse9I AATT 6 cut(s) 709, 776, 966, 1151, 1302, 1431
SseBI AGGCCT 1 cut(s) 220
SspI AATATT 1 cut(s) 1050
SspMI CTAG 3 cut(s) 486, 678, 1344
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 4 cut(s) 282, 477, 491, 589
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 4 cut(s) 386, 805, 890, 1026
TaiI ACGT 1 cut(s) 830
TaqI TCGA 5 cut(s) 270, 473, 1021, 1223, 1340
TasI AATT 6 cut(s) 709, 776, 966, 1151, 1302, 1431
TatI WGTACW 2 cut(s) 498, 612
TfiI GAWTC 6 cut(s) 84, 176, 401, 524, 681, 915
Tru1I TTAA 2 cut(s) 716, 1419
Tru9I TTAA 2 cut(s) 716, 1419
TscAI CASTG 3 cut(s) 130, 677, 1006
TseFI GTSAC 3 cut(s) 481, 823, 943
Tsp45I GTSAC 3 cut(s) 481, 823, 943
TspDTI ATGAA 6 cut(s) 502, 506, 616, 1054, 1458, 1500
TspGWI ACGGA 3 cut(s) 169, 384, 690
TspRI CASTG 3 cut(s) 130, 677, 1006
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 280, 489
XapI RAATTY 3 cut(s) 776, 966, 1151
XcmI CCANNNNNNNNNTGG 1 cut(s) 1123
XmiI GTMKAC 1 cut(s) 1173
XmnI GAANNNNTTC 1 cut(s) 696
XspI CTAG 3 cut(s) 486, 678, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.