Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002054.1

Orthogroup ID

OG0016015

Physical Location & Seq

Genomic Coordinates Reverse (-)

105952 .. 108662

Gene Structure 2711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002054.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

atgtggtactctgctcttcttcttcttgtgcactgccttctgagtgtggaagcctccgtccaccactacgccggagacagattcgtcgccaaaggcaacgcctttgtcgtccacggcggcagcgagggaatttactcttctgcccctgccgacgactccgccaaggccaactcttacatacgcgagggaatttactcttctgcccctgccgacgactccgccaaggacaactcttacatacgctttgagaaggttacgtttcggagaagcaaagaatcggctaatttcagctctgggcctgtccatgccattgtttttgaggtggaagatagagagaacattgggggttcagcatatggaggtcaaagagcagtatgttgcactggggatcttgcgaagctcggtgtgtgtaagcaaggcgatatcattcaccgcccgtccaccaagaacccaggttggcctcaagtttttggtgtttcgtttgaagtagatgaggaagttgtcgcattgccatccaagttcataccgattcataagactgggatgtataatttgtatttcatacattgtgatttgaagttgaaggatttggtggttgaggggaatactatatggaaaaaccctaccgggtatttgcctggtagaatggcaccgtttatgcttttttacgggtttatgtctcttgcttttttcatacttgggatcttttggttctcacagtatgcaaggttttggagagaagttcttccgttgcagaattgcatcacactagtcataacactaggtatgcttgagatggctttatggtattttgagtatgctgaattcaatgagactggggtcaggccaactgggatcactgtatgggcagtttcatttggtgcagttaaacgaacagtagcgcgtttaatacttctcatggtctccatgggctatggggttgtaaggccatccctaggtgggcttacatcaaaagtggtgtttcttggattaacattcttcttggcaactgaggttcttgagatggttgaaaacgttggtgcagttagtgatctttctggaaaggcaaggttgttcttggttcttcctgtggcaatattggatgctttcttcattctttggatttttacttctctctctgcaactttaaataagcttcaggctaggcgaatgatggttaaagtagatatatacaggaagttcaccaacgctttggcagtaactgttgttgtatctgtgggctggatatgctatgagctatatcacaaatcaaatgatgtttacaatgagcagtggcataatgcatggatcatccctgccttctggcaagttttatccttctctctcctatgtgtcatctgtgctctttgggcaccatcccagaactcaacaagatatgcttactctggagatgcaagtgaagagtttgacagggatgaaactactttgaccctcataaaaccatctctactgccttctaaggatgtccatagagcaacagaagctagagcggtgcaaagcagcaatggagtaacaaatggtgatgaggaagaggacaagatagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0031985 GO:0032580 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

522

Amino Acids

58.26

Weight (kDa)

6.04

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72480
fragaria_vesca	FvH4_6g35090
malus_domestica	MD09G1178800.v1.1 MD17G1164600.v1.1
prunus_persica	Prupe.3G038100_v2.0.a1
pyrus_communis	pycom09g09720 pycom17g15770
rosa_chinensis	RchiOBHm_Chr2g0146271
rosa_laevigata	RLG00000020191
rosa_multiflora	Rmu_sc0002054.1_g000015
rosa_roxburghii	Rroxscaffold_2G00100190
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2BG462500 Rh2DG471700
rosa_wichuraiana	Rw2G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccB1I	GGYRCC	2 cut(s)	649, 1372
AccBSI	CCGCTC	1 cut(s)	1511
AccII	CGCG	2 cut(s)	183, 904
AciI	CCGC	5 cut(s)	117, 159, 219, 433, 1511
AclI	AACGTT	1 cut(s)	1035
AclWI	GGATC	4 cut(s)	396, 710, 863, 1316
AcsI	RAATTY	3 cut(s)	129, 189, 824
AcuI	CTGAAG	1 cut(s)	1142
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	956, 960
AgsI	TTSAA	5 cut(s)	485, 577, 583, 829, 1031
AhlI	ACTAGT	1 cut(s)	769
AjnI	CCWGG	2 cut(s)	451, 637
AluBI	AGCT	5 cut(s)	291, 400, 1156, 1258, 1505
AluI	AGCT	5 cut(s)	291, 400, 1156, 1258, 1505
Alw21I	GWGCWC	2 cut(s)	33, 1366
Alw26I	GTCTC	4 cut(s)	69, 684, 827, 928
Alw44I	GTGCAC	1 cut(s)	29
AlwI	GGATC	4 cut(s)	396, 710, 863, 1316
AlwNI	CAGNNNCTG	1 cut(s)	1223
AoxI	GGCC	5 cut(s)	165, 296, 458, 845, 947
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	120, 1521
ApoI	RAATTY	3 cut(s)	129, 189, 824
Asp700I	GAANNNNTTC	1 cut(s)	744
AspA2I	CCTAGG	1 cut(s)	955
AspLEI	GCGC	1 cut(s)	904
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	3 cut(s)	422, 1195, 1553
AvrII	CCTAGG	1 cut(s)	955
BaeGI	GKGCMC	2 cut(s)	33, 1375
BanI	GGYRCC	2 cut(s)	649, 1372
Bbv12I	GWGCWC	2 cut(s)	33, 1366
BbvI	GCAGC	2 cut(s)	132, 1533
BccI	CCATC	7 cut(s)	520, 790, 958, 1018, 1168, 1384, 1471
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	453, 639
BcnI	CCSGG	1 cut(s)	628
BcoDI	GTCTC	4 cut(s)	69, 684, 827, 928
BcuI	ACTAGT	1 cut(s)	769
BfaI	CTAG	5 cut(s)	770, 782, 956, 1164, 1506
BisI	GCNGC	3 cut(s)	118, 121, 1522
BlnI	CCTAGG	1 cut(s)	955
BlsI	GCNGC	3 cut(s)	119, 122, 1523
Bme1390I	CCNGG	3 cut(s)	453, 628, 639
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	651, 1374
BmrFI	CCNGG	3 cut(s)	453, 628, 639
BmrI	ACTGGG	4 cut(s)	393, 549, 846, 861
BmsI	GCATC	3 cut(s)	771, 1093, 1402
BmuI	ACTGGG	4 cut(s)	393, 549, 846, 861
BoxI	GACNNNNGTC	1 cut(s)	839
BpmI	CTGGAG	1 cut(s)	1428
BpuEI	CTTGAG	3 cut(s)	447, 812, 1040
BpuMI	CCSGG	1 cut(s)	628
BsaI	GGTCTC	1 cut(s)	928
BsaJI	CCNNGG	6 cut(s)	112, 162, 222, 451, 927, 955
Bsc4I	CCNNNNNNNGG	2 cut(s)	956, 960
Bse1I	ACTGG	4 cut(s)	388, 544, 841, 856
Bse3DI	GCAATG	2 cut(s)	506, 1531
BseBI	CCWGG	2 cut(s)	453, 639
BseDI	CCNNGG	6 cut(s)	112, 162, 222, 451, 927, 955
BseGI	GGATG	8 cut(s)	512, 549, 950, 1108, 1311, 1376, 1441, 1489
BseLI	CCNNNNNNNGG	2 cut(s)	956, 960
BseMI	GCAATG	2 cut(s)	506, 1531
BseMII	CTCAG	2 cut(s)	32, 1002
BseNI	ACTGG	4 cut(s)	388, 544, 841, 856
BseSI	GKGCMC	2 cut(s)	33, 1375
BseXI	GCAGC	2 cut(s)	132, 1533
BsgI	GTGCAG	2 cut(s)	903, 1062
Bsh1236I	CGCG	2 cut(s)	183, 904
BshFI	GGCC	5 cut(s)	167, 298, 460, 847, 949
BshNI	GGYRCC	2 cut(s)	649, 1372
BsiHKAI	GWGCWC	2 cut(s)	33, 1366
BsiSI	CCGG	2 cut(s)	72, 627
BslI	CCNNNNNNNGG	2 cut(s)	956, 960
BsmAI	GTCTC	4 cut(s)	69, 684, 827, 928
BsnI	GGCC	5 cut(s)	167, 298, 460, 847, 949
Bso31I	GGTCTC	1 cut(s)	928
Bsp1286I	GDGCHC	3 cut(s)	33, 1366, 1375
Bsp143I	GATC	5 cut(s)	388, 702, 855, 1051, 1308
Bsp19I	CCATGG	1 cut(s)	927
BspACI	CCGC	5 cut(s)	117, 159, 219, 433, 1511
BspANI	GGCC	5 cut(s)	167, 298, 460, 847, 949
BspCNI	CTCAG	2 cut(s)	33, 1003
BspFNI	CGCG	2 cut(s)	183, 904
BspLI	GGNNCC	2 cut(s)	651, 1374
BspPI	GGATC	4 cut(s)	396, 710, 863, 1316
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	2 cut(s)	649, 1372
BspTNI	GGTCTC	1 cut(s)	928
BsrBI	CCGCTC	1 cut(s)	1511
BsrDI	GCAATG	2 cut(s)	506, 1531
BsrI	ACTGG	4 cut(s)	388, 544, 841, 856
BssECI	CCNNGG	6 cut(s)	112, 162, 222, 451, 927, 955
BssMI	GATC	5 cut(s)	388, 702, 855, 1051, 1308
BssT1I	CCWWGG	4 cut(s)	162, 222, 927, 955
Bst2UI	CCWGG	2 cut(s)	453, 639
Bst4CI	ACNGT	5 cut(s)	654, 720, 862, 898, 1225
Bst6I	CTCTTC	5 cut(s)	21, 142, 202, 1416, 1545
BstDEI	CTNAG	3 cut(s)	41, 1011, 1479
BstDSI	CCRYGG	2 cut(s)	112, 927
BstF5I	GGATG	8 cut(s)	512, 549, 950, 1108, 1311, 1376, 1441, 1489
BstFNI	CGCG	2 cut(s)	183, 904
BstHHI	GCGC	1 cut(s)	904
BstKTI	GATC	5 cut(s)	391, 705, 858, 1054, 1311
BstMAI	GTCTC	4 cut(s)	69, 684, 827, 928
BstMBI	GATC	5 cut(s)	388, 702, 855, 1051, 1308
BstMWI	GCNNNNNNNGC	3 cut(s)	1248, 1370, 1502
BstNI	CCWGG	2 cut(s)	453, 639
BstPAI	GACNNNNGTC	1 cut(s)	839
BstSCI	CCNGG	3 cut(s)	451, 626, 637
BstSLI	GKGCMC	2 cut(s)	33, 1375
BstUI	CGCG	2 cut(s)	183, 904
BstV1I	GCAGC	2 cut(s)	132, 1533
BstX2I	RGATCY	2 cut(s)	388, 702
BstXI	CCANNNNNNTGG	1 cut(s)	1213
BstYI	RGATCY	2 cut(s)	388, 702
BsuRI	GGCC	5 cut(s)	167, 298, 460, 847, 949
BtgI	CCRYGG	2 cut(s)	112, 927
BtsCI	GGATG	8 cut(s)	512, 549, 950, 1108, 1311, 1376, 1441, 1489
BtsI	GCAGTG	2 cut(s)	31, 1298
BtsIMutI	CAGTG	4 cut(s)	31, 381, 858, 1298
CaiI	CAGNNNCTG	1 cut(s)	1223
CfoI	GCGC	1 cut(s)	904
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	4 cut(s)	305, 919, 928, 1305
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	41, 1011, 1479
DpnI	GATC	5 cut(s)	390, 704, 857, 1053, 1310
DpnII	GATC	5 cut(s)	388, 702, 855, 1051, 1308
DraI	TTTAAA	1 cut(s)	1149
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	5 cut(s)	21, 142, 202, 1416, 1545
EarI	CTCTTC	5 cut(s)	21, 142, 202, 1416, 1545
EciI	GGCGGA	2 cut(s)	148, 208
Eco130I	CCWWGG	4 cut(s)	162, 222, 927, 955
Eco31I	GGTCTC	1 cut(s)	928
Eco32I	GATATC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	1142
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	2 cut(s)	451, 637
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	4 cut(s)	162, 222, 927, 955
EcoT22I	ATGCAT	1 cut(s)	1306
ErhI	CCWWGG	4 cut(s)	162, 222, 927, 955
FaeI	CATG	4 cut(s)	308, 922, 931, 1308
FalI	AAGNNNNNCTT	2 cut(s)	1384, 1416
FatI	CATG	4 cut(s)	304, 918, 927, 1304
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	118, 121, 1522
FokI	GGATG	8 cut(s)	499, 556, 937, 1115, 1298, 1363, 1448, 1496
Fsp4HI	GCNGC	3 cut(s)	118, 121, 1522
FspBI	CTAG	5 cut(s)	770, 782, 956, 1164, 1506
GlaI	GCGC	1 cut(s)	903
GluI	GCNGC	3 cut(s)	118, 121, 1522
GsuI	CTGGAG	1 cut(s)	1428
HaeIII	GGCC	5 cut(s)	167, 298, 460, 847, 949
HapII	CCGG	2 cut(s)	72, 627
HhaI	GCGC	1 cut(s)	904
Hin1II	CATG	4 cut(s)	308, 922, 931, 1308
Hin6I	GCGC	1 cut(s)	902
HinP1I	GCGC	1 cut(s)	902
HindIII	AAGCTT	1 cut(s)	1154
HinfI	GANTC	5 cut(s)	81, 155, 215, 275, 529
HpaII	CCGG	2 cut(s)	72, 627
HphI	GGTGA	3 cut(s)	422, 1195, 1553
Hpy166II	GTNNAC	6 cut(s)	31, 61, 112, 441, 1203, 1282
Hpy188I	TCNGA	2 cut(s)	42, 264
Hpy188III	TCNNGA	3 cut(s)	1019, 1059, 1407
Hpy8I	GTNNAC	6 cut(s)	31, 61, 112, 441, 1203, 1282
Hpy99I	CGWCG	3 cut(s)	89, 155, 215
HpyAV	CCTTC	6 cut(s)	47, 244, 577, 1330, 1348, 1485
HpyCH4III	ACNGT	5 cut(s)	654, 720, 862, 898, 1225
HpyCH4IV	ACGT	2 cut(s)	257, 1035
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1248, 1370, 1502
HpyF3I	CTNAG	3 cut(s)	41, 1011, 1479
HpySE526I	ACGT	2 cut(s)	257, 1035
Hsp92II	CATG	4 cut(s)	308, 922, 931, 1308
HspAI	GCGC	1 cut(s)	902
Kzo9I	GATC	5 cut(s)	388, 702, 855, 1051, 1308
LguI	GCTCTTC	1 cut(s)	21
Lsp1109I	GCAGC	2 cut(s)	132, 1533
LweI	GCATC	3 cut(s)	771, 1093, 1402
MaeI	CTAG	5 cut(s)	770, 782, 956, 1164, 1506
MaeII	ACGT	2 cut(s)	257, 1035
MaeIII	GTNAC	3 cut(s)	253, 1219, 1531
MalI	GATC	5 cut(s)	390, 704, 857, 1053, 1310
MbiI	CCGCTC	1 cut(s)	1511
MboI	GATC	5 cut(s)	388, 702, 855, 1051, 1308
MflI	RGATCY	2 cut(s)	388, 702
MhlI	GDGCHC	3 cut(s)	33, 1366, 1375
MluCI	AATT	6 cut(s)	129, 189, 283, 550, 757, 824
MlyI	GAGTC	2 cut(s)	149, 209
Mph1103I	ATGCAT	1 cut(s)	1306
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	5 cut(s)	888, 908, 992, 1148, 1179
MspI	CCGG	2 cut(s)	72, 627
MspR9I	CCNGG	3 cut(s)	453, 628, 639
MvaI	CCWGG	2 cut(s)	453, 639
MvnI	CGCG	2 cut(s)	183, 904
MwoI	GCNNNNNNNGC	3 cut(s)	1248, 1370, 1502
NciI	CCSGG	1 cut(s)	628
NcoI	CCATGG	1 cut(s)	927
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	5 cut(s)	388, 702, 855, 1051, 1308
NlaIII	CATG	4 cut(s)	308, 922, 931, 1308
NlaIV	GGNNCC	2 cut(s)	651, 1374
NsiI	ATGCAT	1 cut(s)	1306
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 120
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	3 cut(s)	81, 275, 529
PkrI	GCNGC	3 cut(s)	119, 122, 1523
PleI	GAGTC	2 cut(s)	149, 209
PpsI	GAGTC	2 cut(s)	149, 209
PshAI	GACNNNNGTC	1 cut(s)	839
Psp1406I	AACGTT	1 cut(s)	1035
Psp6I	CCWGG	2 cut(s)	451, 637
PspGI	CCWGG	2 cut(s)	451, 637
PspN4I	GGNNCC	2 cut(s)	651, 1374
PspPI	GGNCC	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	1223
PsuI	RGATCY	2 cut(s)	388, 702
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	888, 908, 992, 1148, 1179
SatI	GCNGC	3 cut(s)	118, 121, 1522
Sau3AI	GATC	5 cut(s)	388, 702, 855, 1051, 1308
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	2 cut(s)	149, 209
ScrFI	CCNGG	3 cut(s)	453, 628, 639
SduI	GDGCHC	3 cut(s)	33, 1366, 1375
SfaNI	GCATC	3 cut(s)	771, 1093, 1402
SmlI	CTYRAG	3 cut(s)	462, 791, 1019
SmoI	CTYRAG	3 cut(s)	462, 791, 1019
SpeI	ACTAGT	1 cut(s)	769
Sse9I	AATT	6 cut(s)	129, 189, 283, 550, 757, 824
SsiI	CCGC	5 cut(s)	117, 159, 219, 433, 1511
SspI	AATATT	1 cut(s)	1098
SspMI	CTAG	5 cut(s)	770, 782, 956, 1164, 1506
StyD4I	CCNGG	3 cut(s)	451, 626, 637
StyI	CCWWGG	4 cut(s)	162, 222, 927, 955
TaaI	ACNGT	5 cut(s)	654, 720, 862, 898, 1225
TaiI	ACGT	2 cut(s)	260, 1038
TasI	AATT	6 cut(s)	129, 189, 283, 550, 757, 824
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	81, 275, 529
Tru1I	TTAA	5 cut(s)	888, 908, 992, 1148, 1179
Tru9I	TTAA	5 cut(s)	888, 908, 992, 1148, 1179
TscAI	CASTG	4 cut(s)	38, 388, 865, 1298
TseI	GCWGC	2 cut(s)	120, 1521
TspDTI	ATGAA	7 cut(s)	511, 521, 550, 682, 864, 1102, 1452
TspGWI	ACGGA	2 cut(s)	46, 738
TspRI	CASTG	4 cut(s)	38, 388, 865, 1298
VneI	GTGCAC	1 cut(s)	29
XapI	RAATTY	3 cut(s)	129, 189, 824
XmaJI	CCTAGG	1 cut(s)	955
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	5 cut(s)	770, 782, 956, 1164, 1506
Zsp2I	ATGCAT	1 cut(s)	1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.