Prupe.3G038100_v2.0.a1

Transmembrane protein 87A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016015
Physical Location & Seq
Reverse (-)
2750089 .. 2753017
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G038100.1

Sequence Viewer

Length: 1521 bp
ATGTGGTTCTCTTCTTCATCTCTTGCTCTTCTGCTATGCGTTTTGAGCGTGGAAGCTTCGGTCCACGAGTACGCCGAAGAGAGATTCGCCACTAAAGGCAACGCCTTTGTCGTCCATGGCGGTAGCGAGGGAATTTACTCTTCTGCCCCTACTCAATCGACCTCCGTCTCTGCCAACGGCGACTCATTTATACGCTTTGAAAAGATTACATTTAGGAGAAGCAAAGAATCTGCTAACTTGAGCTCACGGCCTGTCCATGCCATTGTTTTTGAGGTGGAGGATAGAGAGACTATTGGGGGTTCAGCCTATGGTGGTCAAAGAGCAGTGTGTTGCACAGGGGATCTTGCAAAACTGGGAGTTTGTACCGAAGGTGAAATCATACACCGCCCGTCTACTAAGAATCCAGGTTGGCCTCAGGTATTTGGTGTCTCATTTGAAGCACATGAGAAAGTTGCCACATTGCCATCCAAATCCATACTGATTACTAAAACTGGGATGTACAATTTGTATTTCATTCATTGCGATCTGAAGCTGAACGATTTGGTTGTTGAGGGGAAAACTATATGGAAAAACCCTACTGGGTATTTACCTGGTAGAATGGCACCTTTTATGAATTTCTATGGGTTTATGTCCCTTGCTTTTGTCATACTTGGGATCTTTTGGTTCTCACAGTATGCAAGATTTTGGAGAGAAGTTTTCCCATTGCAGAACTGTATCACTCTGGTAATAACACTGGGTATGTTTGAGATGGCTCTATGGTATTTTGAGTATGCTGAATTCAACGAGACTGGAGTCCGACCAACTGGGATAACTGTATGGGCAGTTACCTTTGGGACGGTTAAACGTACGGTGGCACGTGTGATACTTTTAATGGTCTCCATGGGCTTCGGTGTTGTAAGGCCTTCCCTTGGTGGGCTTACATCGAAGGTGATTTTGCTTGGACTGACCTTCTTTGTGGCATCCGAGGTTCTTGAGATGGTAGAAAACGTAGGTGCAGTAAGTGATCTTTCCGGAAAGGCAAGGTTGTTCTTGGTTCTTCCTGTTGCAATACTGGATGCTTTCTTCATTCTTTGGATATTCACTTCCCTCTCCGCAACTTTAAATAAGCTTCAGGCTAGGCGAATGATGGTTAAACTTGATATTTACAGGAAGTTTACCAACGCTTTGGCAGTGACTGTCGTTGTGTCCGTGGGTTGGATATGCTATGAGCTATATTTCAAATCAAATGATGTGTACAATGAGCAGTGGCAGAATGCATGGATCATCCCTGCCTTCTGGCAAGTTTTATCTTTCTCTCTCCTATTTGTCATCTGCGTTCTTTGGGCACCATCGCAGAACTCAACAAGATATGCTTACTTGGGAGATGCAAGCGAAGAGTTTGACAAGGACGATACGACCTTGACACTCATAAAGCCATCTCTAACGCCTGCTAAGGATGTCCTTAGTGCACCAGAAGCTAGAGCAATGCAAAGCAGCAATGGGTTATCAAAAGGTGGTGATGAAGAAGACAAGATAGAGTAA

Protein Analysis

507

Amino Acids

56.33

Weight (kDa)

6.16

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72480
fragaria_vesca FvH4_6g35090
malus_domestica MD09G1178800.v1.1 MD17G1164600.v1.1
prunus_persica Prupe.3G038100_v2.0.a1
pyrus_communis pycom09g09720 pycom17g15770
rosa_chinensis RchiOBHm_Chr2g0146271
rosa_laevigata RLG00000020191
rosa_multiflora Rmu_sc0002054.1_g000015
rosa_roxburghii Rroxscaffold_2G00100190
rosa_rugosa Rorug02G0394100
rosa_samantha Rh2BG462500 Rh2DG471700
rosa_wichuraiana Rw2G036750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 601, 1324
AccI GTMKAC 1 cut(s) 392
AccIII TCCGGA 1 cut(s) 1010
AciI CCGC 3 cut(s) 120, 385, 1092
AclWI GGATC 3 cut(s) 348, 662, 1268
AcsI RAATTY 3 cut(s) 132, 613, 776
AcuI CTGAAG 2 cut(s) 548, 1094
AcvI CACGTG 1 cut(s) 857
AfaI GTAC 5 cut(s) 71, 364, 500, 847, 1235
AfiI CCNNNNNNNGG 3 cut(s) 908, 912, 1194
AflIII ACRYGT 1 cut(s) 856
AgsI TTSAA 4 cut(s) 200, 437, 781, 1219
AjnI CCWGG 2 cut(s) 403, 589
AluBI AGCT 6 cut(s) 56, 243, 532, 1108, 1210, 1457
AluI AGCT 6 cut(s) 56, 243, 532, 1108, 1210, 1457
Alw21I GWGCWC 2 cut(s) 245, 1450
Alw26I GTCTC 5 cut(s) 172, 281, 433, 779, 880
Alw44I GTGCAC 1 cut(s) 1446
AlwI GGATC 3 cut(s) 348, 662, 1268
AlwNI CAGNNNCTG 1 cut(s) 1175
Aor13HI TCCGGA 1 cut(s) 1010
AoxI GGCC 3 cut(s) 248, 410, 899
ApaLI GTGCAC 1 cut(s) 1446
ApeKI GCWGC 1 cut(s) 1473
ApoI RAATTY 3 cut(s) 132, 613, 776
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 3 cut(s) 383, 940, 1508
AvaII GGWCC 1 cut(s) 61
AxyI CCTNAGG 1 cut(s) 414
BaeGI GKGCMC 2 cut(s) 1327, 1450
BanI GGYRCC 2 cut(s) 601, 1324
BanII GRGCYC 1 cut(s) 245
BauI CACGAG 1 cut(s) 65
BbrPI CACGTG 1 cut(s) 857
BbsI GAAGAC 1 cut(s) 1512
Bbv12I GWGCWC 2 cut(s) 245, 1450
BbvI GCAGC 1 cut(s) 1485
BccI CCATC 6 cut(s) 472, 742, 970, 1120, 1336, 1423
BceAI ACGGC 2 cut(s) 193, 263
BciT130I CCWGG 2 cut(s) 405, 591
BcoDI GTCTC 5 cut(s) 172, 281, 433, 779, 880
BfaI CTAG 2 cut(s) 1116, 1458
BisI GCNGC 1 cut(s) 1474
BlsI GCNGC 1 cut(s) 1475
Bme1390I CCNGG 2 cut(s) 405, 591
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 603, 1326
BmrFI CCNGG 2 cut(s) 405, 591
BmrI ACTGGG 5 cut(s) 362, 501, 588, 743, 813
BmsI GCATC 3 cut(s) 968, 1045, 1354
BmuI ACTGGG 5 cut(s) 362, 501, 588, 743, 813
BoxI GACNNNNGTC 2 cut(s) 164, 791
BpiI GAAGAC 1 cut(s) 1512
BpmI CTGGAG 1 cut(s) 810
Bpu10I CCTNAGC 1 cut(s) 1431
BpuEI CTTGAG 2 cut(s) 259, 992
BsaAI YACGTR 1 cut(s) 857
BsaI GGTCTC 1 cut(s) 880
BsaJI CCNNGG 5 cut(s) 115, 879, 907, 963, 1188
BsaWI WCCGGW 1 cut(s) 1010
Bsc4I CCNNNNNNNGG 3 cut(s) 908, 912, 1194
Bse1I ACTGG 7 cut(s) 357, 496, 583, 738, 793, 808, 1056
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 5 cut(s) 458, 517, 701, 1470, 1483
BseAI TCCGGA 1 cut(s) 1010
BseBI CCWGG 2 cut(s) 405, 591
BseDI CCNNGG 5 cut(s) 115, 879, 907, 963, 1188
BseGI GGATG 6 cut(s) 464, 501, 959, 1060, 1263, 1441
BseLI CCNNNNNNNGG 3 cut(s) 908, 912, 1194
BseMI GCAATG 5 cut(s) 458, 517, 701, 1470, 1483
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 7 cut(s) 357, 496, 583, 738, 793, 808, 1056
BseSI GKGCMC 2 cut(s) 1327, 1450
BseXI GCAGC 1 cut(s) 1485
BsgI GTGCAG 1 cut(s) 1014
BshFI GGCC 3 cut(s) 250, 412, 901
BshNI GGYRCC 2 cut(s) 601, 1324
BsiHKAI GWGCWC 2 cut(s) 245, 1450
BsiSI CCGG 1 cut(s) 1011
BsiWI CGTACG 1 cut(s) 845
BslFI GGGAC 2 cut(s) 616, 847
BslI CCNNNNNNNGG 3 cut(s) 908, 912, 1194
BsmAI GTCTC 5 cut(s) 172, 281, 433, 779, 880
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 616, 847
BsmI GAATGC 1 cut(s) 1258
BsnI GGCC 3 cut(s) 250, 412, 901
Bso31I GGTCTC 1 cut(s) 880
Bsp1286I GDGCHC 3 cut(s) 245, 1327, 1450
Bsp13I TCCGGA 1 cut(s) 1010
Bsp1407I TGTACA 2 cut(s) 498, 1233
Bsp143I GATC 5 cut(s) 340, 523, 654, 1003, 1260
Bsp19I CCATGG 2 cut(s) 115, 879
BspACI CCGC 3 cut(s) 120, 385, 1092
BspANI GGCC 3 cut(s) 250, 412, 901
BspCNI CTCAG 1 cut(s) 427
BspEI TCCGGA 1 cut(s) 1010
BspLI GGNNCC 2 cut(s) 603, 1326
BspPI GGATC 3 cut(s) 348, 662, 1268
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 2 cut(s) 601, 1324
BspTNI GGTCTC 1 cut(s) 880
BsrDI GCAATG 5 cut(s) 458, 517, 701, 1470, 1483
BsrGI TGTACA 2 cut(s) 498, 1233
BsrI ACTGG 7 cut(s) 357, 496, 583, 738, 793, 808, 1056
BssECI CCNNGG 5 cut(s) 115, 879, 907, 963, 1188
BssMI GATC 5 cut(s) 340, 523, 654, 1003, 1260
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 3 cut(s) 115, 879, 907
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 405, 591
Bst4CI ACNGT 6 cut(s) 672, 713, 814, 838, 850, 1177
Bst6I CTCTTC 5 cut(s) 16, 33, 72, 145, 1368
BstAUI TGTACA 2 cut(s) 498, 1233
BstBAI YACGTR 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 1369, 1428
BstDEI CTNAG 4 cut(s) 396, 414, 1431, 1442
BstDSI CCRYGG 3 cut(s) 115, 879, 1188
BstF5I GGATG 6 cut(s) 464, 501, 959, 1060, 1263, 1441
BstKTI GATC 5 cut(s) 343, 526, 657, 1006, 1263
BstMAI GTCTC 5 cut(s) 172, 281, 433, 779, 880
BstMBI GATC 5 cut(s) 340, 523, 654, 1003, 1260
BstMWI GCNNNNNNNGC 2 cut(s) 45, 1454
BstNI CCWGG 2 cut(s) 405, 591
BstPAI GACNNNNGTC 2 cut(s) 164, 791
BstSCI CCNGG 2 cut(s) 403, 589
BstSLI GKGCMC 2 cut(s) 1327, 1450
BstV1I GCAGC 1 cut(s) 1485
BstV2I GAAGAC 1 cut(s) 1512
BstX2I RGATCY 2 cut(s) 340, 654
BstXI CCANNNNNNTGG 1 cut(s) 1165
BstYI RGATCY 2 cut(s) 340, 654
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 3 cut(s) 250, 412, 901
BtgI CCRYGG 3 cut(s) 115, 879, 1188
BtgZI GCGATG 1 cut(s) 1314
BtsCI GGATG 6 cut(s) 464, 501, 959, 1060, 1263, 1441
BtsI GCAGTG 3 cut(s) 330, 1176, 1250
BtsIMutI CAGTG 4 cut(s) 330, 731, 1176, 1250
Cac8I GCNNGC 2 cut(s) 1369, 1428
CaiI CAGNNNCTG 1 cut(s) 1175
Cfr13I GGNCC 1 cut(s) 61
CsiI ACCWGGT 1 cut(s) 589
Csp6I GTAC 5 cut(s) 70, 363, 499, 846, 1234
CviAII CATG 5 cut(s) 116, 257, 443, 880, 1257
CviQI GTAC 5 cut(s) 70, 363, 499, 846, 1234
DdeI CTNAG 4 cut(s) 396, 414, 1431, 1442
DpnI GATC 5 cut(s) 342, 525, 656, 1005, 1262
DpnII GATC 5 cut(s) 340, 523, 654, 1003, 1260
DraI TTTAAA 1 cut(s) 1101
Eam1104I CTCTTC 5 cut(s) 16, 33, 72, 145, 1368
EarI CTCTTC 5 cut(s) 16, 33, 72, 145, 1368
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 3 cut(s) 115, 879, 907
Eco147I AGGCCT 1 cut(s) 901
Eco24I GRGCYC 1 cut(s) 245
Eco31I GGTCTC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 61
Eco53kI GAGCTC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 548, 1094
Eco72I CACGTG 1 cut(s) 857
Eco81I CCTNAGG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 776
EcoRII CCWGG 2 cut(s) 403, 589
EcoT14I CCWWGG 3 cut(s) 115, 879, 907
EcoT22I ATGCAT 1 cut(s) 1258
EcoT38I GRGCYC 1 cut(s) 245
ErhI CCWWGG 3 cut(s) 115, 879, 907
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 5 cut(s) 119, 260, 446, 883, 1260
FalI AAGNNNNNCTT 2 cut(s) 1336, 1368
FaqI GGGAC 2 cut(s) 616, 847
FatI CATG 5 cut(s) 115, 256, 442, 879, 1256
FblI GTMKAC 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 1474
FokI GGATG 6 cut(s) 451, 508, 946, 1067, 1250, 1448
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 1474
FspBI CTAG 2 cut(s) 1116, 1458
GluI GCNGC 1 cut(s) 1474
GsuI CTGGAG 1 cut(s) 810
HaeIII GGCC 3 cut(s) 250, 412, 901
HapII CCGG 1 cut(s) 1011
Hin1II CATG 5 cut(s) 119, 260, 446, 883, 1260
HindIII AAGCTT 2 cut(s) 54, 1106
HinfI GANTC 5 cut(s) 84, 182, 227, 400, 792
HpaII CCGG 1 cut(s) 1011
HphI GGTGA 3 cut(s) 383, 940, 1508
Hpy166II GTNNAC 5 cut(s) 64, 393, 1155, 1234, 1448
Hpy188I TCNGA 3 cut(s) 528, 797, 964
Hpy188III TCNNGA 2 cut(s) 971, 1011
Hpy8I GTNNAC 5 cut(s) 64, 393, 1155, 1234, 1448
HpyAV CCTTC 5 cut(s) 362, 912, 919, 958, 1282
HpyCH4III ACNGT 6 cut(s) 672, 713, 814, 838, 850, 1177
HpyCH4IV ACGT 3 cut(s) 844, 856, 987
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 1454
HpyF3I CTNAG 4 cut(s) 396, 414, 1431, 1442
HpySE526I ACGT 3 cut(s) 844, 856, 987
Hsp92II CATG 5 cut(s) 119, 260, 446, 883, 1260
Kpn2I TCCGGA 1 cut(s) 1010
Kzo9I GATC 5 cut(s) 340, 523, 654, 1003, 1260
LguI GCTCTTC 1 cut(s) 33
Lsp1109I GCAGC 1 cut(s) 1485
LweI GCATC 3 cut(s) 968, 1045, 1354
MabI ACCWGGT 1 cut(s) 589
MaeI CTAG 2 cut(s) 1116, 1458
MaeII ACGT 3 cut(s) 844, 856, 987
MaeIII GTNAC 2 cut(s) 823, 1171
MalI GATC 5 cut(s) 342, 525, 656, 1005, 1262
MboI GATC 5 cut(s) 340, 523, 654, 1003, 1260
MflI RGATCY 2 cut(s) 340, 654
MhlI GDGCHC 3 cut(s) 245, 1327, 1450
MluCI AATT 4 cut(s) 132, 502, 613, 776
MlyI GAGTC 2 cut(s) 176, 801
MmeI TCCRAC 2 cut(s) 820, 1175
MnlI CCTC 8 cut(s) 121, 172, 265, 271, 423, 544, 958, 1097
Mph1103I ATGCAT 1 cut(s) 1258
MroI TCCGGA 1 cut(s) 1010
MseI TTAA 4 cut(s) 840, 869, 1100, 1131
MspI CCGG 1 cut(s) 1011
MspR9I CCNGG 2 cut(s) 405, 591
Mva1269I GAATGC 1 cut(s) 1258
MvaI CCWGG 2 cut(s) 405, 591
MwoI GCNNNNNNNGC 2 cut(s) 45, 1454
NcoI CCATGG 2 cut(s) 115, 879
NdeII GATC 5 cut(s) 340, 523, 654, 1003, 1260
NlaIII CATG 5 cut(s) 119, 260, 446, 883, 1260
NlaIV GGNNCC 2 cut(s) 603, 1326
NmuCI GTSAC 1 cut(s) 1171
NsiI ATGCAT 1 cut(s) 1258
PceI AGGCCT 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 33
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 108, 1185
PctI GAATGC 1 cut(s) 1258
PfeI GAWTC 3 cut(s) 84, 227, 400
Pfl23II CGTACG 1 cut(s) 845
PkrI GCNGC 1 cut(s) 1475
PleI GAGTC 2 cut(s) 176, 800
PmaCI CACGTG 1 cut(s) 857
PmlI CACGTG 1 cut(s) 857
PpsI GAGTC 2 cut(s) 176, 800
Ppu21I YACGTR 1 cut(s) 857
PshAI GACNNNNGTC 2 cut(s) 164, 791
Psp124BI GAGCTC 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 403, 589
PspCI CACGTG 1 cut(s) 857
PspGI CCWGG 2 cut(s) 403, 589
PspLI CGTACG 1 cut(s) 845
PspN4I GGNNCC 2 cut(s) 603, 1326
PspPI GGNCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 1175
PsuI RGATCY 2 cut(s) 340, 654
RsaI GTAC 5 cut(s) 71, 364, 500, 847, 1235
RsaNI GTAC 5 cut(s) 70, 363, 499, 846, 1234
SacI GAGCTC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 4 cut(s) 840, 869, 1100, 1131
SatI GCNGC 1 cut(s) 1474
Sau3AI GATC 5 cut(s) 340, 523, 654, 1003, 1260
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 2 cut(s) 176, 801
ScrFI CCNGG 2 cut(s) 405, 591
SduI GDGCHC 3 cut(s) 245, 1327, 1450
SexAI ACCWGGT 1 cut(s) 589
SfaNI GCATC 3 cut(s) 968, 1045, 1354
SinI GGWCC 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 238, 971
SmoI CTYRAG 2 cut(s) 238, 971
Sse9I AATT 4 cut(s) 132, 502, 613, 776
SseBI AGGCCT 1 cut(s) 901
SsiI CCGC 3 cut(s) 120, 385, 1092
SspMI CTAG 2 cut(s) 1116, 1458
SstI GAGCTC 1 cut(s) 245
StuI AGGCCT 1 cut(s) 901
StyD4I CCNGG 2 cut(s) 403, 589
StyI CCWWGG 3 cut(s) 115, 879, 907
TaaI ACNGT 6 cut(s) 672, 713, 814, 838, 850, 1177
TaiI ACGT 3 cut(s) 847, 859, 990
TaqI TCGA 2 cut(s) 158, 923
TaqII GACCGA 1 cut(s) 49
TasI AATT 4 cut(s) 132, 502, 613, 776
TatI WGTACW 2 cut(s) 498, 1233
TfiI GAWTC 3 cut(s) 84, 227, 400
Tru1I TTAA 4 cut(s) 840, 869, 1100, 1131
Tru9I TTAA 4 cut(s) 840, 869, 1100, 1131
TscAI CASTG 4 cut(s) 330, 738, 1176, 1250
TseFI GTSAC 1 cut(s) 1171
TseI GCWGC 1 cut(s) 1473
Tsp45I GTSAC 1 cut(s) 1171
TspDTI ATGAA 6 cut(s) 6, 502, 506, 626, 1054, 1515
TspGWI ACGGA 2 cut(s) 154, 1177
TspRI CASTG 4 cut(s) 330, 738, 1176, 1250
VneI GTGCAC 1 cut(s) 1446
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 3 cut(s) 132, 613, 776
XmiI GTMKAC 1 cut(s) 392
XspI CTAG 2 cut(s) 1116, 1458
Zsp2I ATGCAT 1 cut(s) 1258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.