Rroxscaffold_2G00100190

Transmembrane protein 87A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016015
Physical Location & Seq
Reverse (-)
22063915 .. 22066876
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100190.1

Sequence Viewer

Length: 1524 bp
ATGTGGTACTCTGCTCTTCTTGTTCTTCTTCTTCTTCTTCTTGTGCTCTGCCTTCTGAGTGTGGAAGCCTCCGTCCACCACTACGCCGGAGACAGATTCGTCTCCAAAGGCAACGCCTTTGTCGTCCACGGCGGCAGCGAGGGAATTTACTCTTCTGCCCCTGCCGACGACTCCGCCAAGGACAACTCATACATACGCTTTGAGAAGGTTACGTTTCGGAGAAGCAAAGAATCGGCTAATTTCAGCTCTGGGCCTGTCCATGCCATTGTTTTTGAGGTGGAAGATAGAGAGAACATTGGGGGTTCAGCATATGGAGGTCAAAGAGCAGTATGTTGCACTGGGGATCTTGCGAAGCTCGGTGTGTGTAAGCAAGGTGATATCATTTACTGCCCGTCCACCAAGAACCCAGGTTGGCCTCAAGTTTTTGGTGTTTCGTTTGAAGTAGATGAGGAAGTTGCTGCATTGCCAGCCAAGTTCATACCGATTCATAAGACTGGGATGTATAATTTGTATTTCATACATTGTGATTTGAAGTTGAAGGATTTGGTGGTTGAGGGGAATACTATATGGAAAAACCCTACCGGGTATTTGCCTGGTAGAATGGCACCGTTTATGCTTTTTTACGGGTTTATGTCCCTTGCTTTTGTCATACTTGGGATCTTTTGGTTCTCACAGTATGCAAGGTTTTGGAGAGAAGTTCTTCCATTGCAGAATTGCATCACACTAGTCATAACACTAGGTATGCTTGAGATGGCTTTATGGTATTTTGAGTATGCTGAATTCAATGAGACTGGGGTCAGGCCAACTGGGATCACTGTATGGGCAGTTTCATTTGGTGCAGTTAAACGAACAGTAGCGCGTTTAATACTTCTCATGGTCTCCATGGGCTATGGGGTTGTAAGGCCATCCCTAGGGGGGCTTACATCAAAAGTGGTGTTTCTTGGATTAACATTCTTCTTGGCAACTGAGGTTCTTGAGATGGTTGAAAACGTTGGTGCAGTTAGTGATCTTTCTGGAAAGGCAAGGTTGTTCTTGGTTCTTCCTGTGGCAATATTGGATGCTTTCTTCATTCTTTGGATTTTTACTTCTCTCTCTGCAACTTTAAATAAGCTTCAGGCTAGGCGAATGATGGTTAAAGTAGATATATACAGGAAGTTCACCAACGCTTTGGCAGTAACTGTTGTTGTATCTGTGGGCTGGATATGCTATGAGCTATATCACAAATCAAATGATGTTTACAATGAGCAGTGGCAGAATGCATGGATCATCCCTGCCTTCTGGCAAGTTTTATCTTTCTCTCTCCTATGTGTCATCTGTGCTCTTTGGGCACCATCCCAGAACTCAACAAGATATGCTTACTCTGGAGATGCAAGTGAAGAGTTTGACAGGGATGAAACTACTTTGACCCTCATAAAACCATCTCTACTGCCTTCTAAGGATGTCCATAGAGCAACAGAAGCTAGAGTGGTGCAAAGCAGCAATGGATTAACAAATGGTGATGAGGAAGAGGACAAGATAGAGTAA

Protein Analysis

507

Amino Acids

56.62

Weight (kDa)

5.85

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 203 - 448 2.1e-90 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72480
fragaria_vesca FvH4_6g35090
malus_domestica MD09G1178800.v1.1 MD17G1164600.v1.1
prunus_persica Prupe.3G038100_v2.0.a1
pyrus_communis pycom09g09720 pycom17g15770
rosa_chinensis RchiOBHm_Chr2g0146271
rosa_laevigata RLG00000020191
rosa_multiflora Rmu_sc0002054.1_g000015
rosa_roxburghii Rroxscaffold_2G00100190
rosa_rugosa Rorug02G0394100
rosa_samantha Rh2BG462500 Rh2DG471700
rosa_wichuraiana Rw2G036750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccB1I GGYRCC 2 cut(s) 604, 1327
AccII CGCG 1 cut(s) 859
AciI CCGC 2 cut(s) 132, 174
AclI AACGTT 1 cut(s) 990
AclWI GGATC 4 cut(s) 351, 665, 818, 1271
AcsI RAATTY 2 cut(s) 144, 779
AcuI CTGAAG 1 cut(s) 1097
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 911, 915
AgsI TTSAA 5 cut(s) 440, 532, 538, 784, 986
AhlI ACTAGT 1 cut(s) 724
AjnI CCWGG 2 cut(s) 406, 592
AluBI AGCT 5 cut(s) 246, 355, 1111, 1213, 1460
AluI AGCT 5 cut(s) 246, 355, 1111, 1213, 1460
Alw21I GWGCWC 2 cut(s) 48, 1321
Alw26I GTCTC 4 cut(s) 84, 106, 782, 883
AlwI GGATC 4 cut(s) 351, 665, 818, 1271
AlwNI CAGNNNCTG 1 cut(s) 1178
AoxI GGCC 4 cut(s) 251, 413, 800, 902
ApeKI GCWGC 3 cut(s) 135, 458, 1476
ApoI RAATTY 2 cut(s) 144, 779
Asp700I GAANNNNTTC 1 cut(s) 699
AspA2I CCTAGG 1 cut(s) 910
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 583
AsuHPI GGTGA 3 cut(s) 386, 1150, 1508
AvrII CCTAGG 1 cut(s) 910
BaeGI GKGCMC 1 cut(s) 1330
BanI GGYRCC 2 cut(s) 604, 1327
Bbv12I GWGCWC 2 cut(s) 48, 1321
BbvI GCAGC 3 cut(s) 147, 445, 1488
BccI CCATC 6 cut(s) 745, 913, 973, 1123, 1339, 1426
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 408, 594
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 4 cut(s) 84, 106, 782, 883
BcuI ACTAGT 1 cut(s) 724
BfaI CTAG 5 cut(s) 725, 737, 911, 1119, 1461
BisI GCNGC 4 cut(s) 133, 136, 459, 1477
BlnI CCTAGG 1 cut(s) 910
BlsI GCNGC 4 cut(s) 134, 137, 460, 1478
Bme1390I CCNGG 3 cut(s) 408, 583, 594
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 606, 1329
BmrFI CCNGG 3 cut(s) 408, 583, 594
BmrI ACTGGG 4 cut(s) 348, 504, 801, 816
BmsI GCATC 3 cut(s) 726, 1048, 1357
BmuI ACTGGG 4 cut(s) 348, 504, 801, 816
BoxI GACNNNNGTC 1 cut(s) 794
BpmI CTGGAG 1 cut(s) 1383
BpuEI CTTGAG 3 cut(s) 402, 767, 995
BpuMI CCSGG 1 cut(s) 583
BsaI GGTCTC 1 cut(s) 883
BsaJI CCNNGG 5 cut(s) 127, 177, 406, 882, 910
Bsc4I CCNNNNNNNGG 2 cut(s) 911, 915
Bse1I ACTGG 4 cut(s) 343, 499, 796, 811
Bse3DI GCAATG 3 cut(s) 461, 704, 1486
BseBI CCWGG 2 cut(s) 408, 594
BseDI CCNNGG 5 cut(s) 127, 177, 406, 882, 910
BseGI GGATG 7 cut(s) 504, 905, 1063, 1266, 1331, 1396, 1444
BseLI CCNNNNNNNGG 2 cut(s) 911, 915
BseMI GCAATG 3 cut(s) 461, 704, 1486
BseMII CTCAG 2 cut(s) 47, 957
BseNI ACTGG 4 cut(s) 343, 499, 796, 811
BseSI GKGCMC 1 cut(s) 1330
BseXI GCAGC 3 cut(s) 147, 445, 1488
BsgI GTGCAG 2 cut(s) 858, 1017
Bsh1236I CGCG 1 cut(s) 859
BshFI GGCC 4 cut(s) 253, 415, 802, 904
BshNI GGYRCC 2 cut(s) 604, 1327
BsiHKAI GWGCWC 2 cut(s) 48, 1321
BsiSI CCGG 2 cut(s) 87, 582
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 2 cut(s) 911, 915
BsmAI GTCTC 4 cut(s) 84, 106, 782, 883
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 1261
BsnI GGCC 4 cut(s) 253, 415, 802, 904
Bso31I GGTCTC 1 cut(s) 883
Bsp1286I GDGCHC 3 cut(s) 48, 1321, 1330
Bsp143I GATC 5 cut(s) 343, 657, 810, 1006, 1263
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 2 cut(s) 132, 174
BspANI GGCC 4 cut(s) 253, 415, 802, 904
BspCNI CTCAG 2 cut(s) 48, 958
BspFNI CGCG 1 cut(s) 859
BspLI GGNNCC 2 cut(s) 606, 1329
BspPI GGATC 4 cut(s) 351, 665, 818, 1271
BspQI GCTCTTC 1 cut(s) 21
BspT107I GGYRCC 2 cut(s) 604, 1327
BspTNI GGTCTC 1 cut(s) 883
BsrDI GCAATG 3 cut(s) 461, 704, 1486
BsrI ACTGG 4 cut(s) 343, 499, 796, 811
BssECI CCNNGG 5 cut(s) 127, 177, 406, 882, 910
BssMI GATC 5 cut(s) 343, 657, 810, 1006, 1263
BssT1I CCWWGG 3 cut(s) 177, 882, 910
Bst2UI CCWGG 2 cut(s) 408, 594
Bst4CI ACNGT 5 cut(s) 609, 675, 817, 853, 1180
Bst6I CTCTTC 4 cut(s) 21, 157, 1371, 1500
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 3 cut(s) 56, 966, 1434
BstDSI CCRYGG 2 cut(s) 127, 882
BstF5I GGATG 7 cut(s) 504, 905, 1063, 1266, 1331, 1396, 1444
BstFNI CGCG 1 cut(s) 859
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 5 cut(s) 346, 660, 813, 1009, 1266
BstMAI GTCTC 4 cut(s) 84, 106, 782, 883
BstMBI GATC 5 cut(s) 343, 657, 810, 1006, 1263
BstMWI GCNNNNNNNGC 4 cut(s) 467, 1203, 1325, 1457
BstNI CCWGG 2 cut(s) 408, 594
BstPAI GACNNNNGTC 1 cut(s) 794
BstSCI CCNGG 3 cut(s) 406, 581, 592
BstSLI GKGCMC 1 cut(s) 1330
BstUI CGCG 1 cut(s) 859
BstV1I GCAGC 3 cut(s) 147, 445, 1488
BstX2I RGATCY 2 cut(s) 343, 657
BstXI CCANNNNNNTGG 1 cut(s) 1168
BstYI RGATCY 2 cut(s) 343, 657
BsuRI GGCC 4 cut(s) 253, 415, 802, 904
BtgI CCRYGG 2 cut(s) 127, 882
BtsCI GGATG 7 cut(s) 504, 905, 1063, 1266, 1331, 1396, 1444
BtsI GCAGTG 1 cut(s) 1253
BtsIMutI CAGTG 3 cut(s) 336, 813, 1253
Cac8I GCNNGC 1 cut(s) 468
CaiI CAGNNNCTG 1 cut(s) 1178
CfoI GCGC 1 cut(s) 859
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 7
CviAII CATG 4 cut(s) 260, 874, 883, 1260
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 3 cut(s) 56, 966, 1434
DpnI GATC 5 cut(s) 345, 659, 812, 1008, 1265
DpnII GATC 5 cut(s) 343, 657, 810, 1006, 1263
DraI TTTAAA 1 cut(s) 1104
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 4 cut(s) 21, 157, 1371, 1500
EarI CTCTTC 4 cut(s) 21, 157, 1371, 1500
EciI GGCGGA 1 cut(s) 163
Eco130I CCWWGG 3 cut(s) 177, 882, 910
Eco31I GGTCTC 1 cut(s) 883
Eco32I GATATC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 779
EcoRII CCWGG 2 cut(s) 406, 592
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 3 cut(s) 177, 882, 910
EcoT22I ATGCAT 1 cut(s) 1261
ErhI CCWWGG 3 cut(s) 177, 882, 910
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 4 cut(s) 263, 877, 886, 1263
FalI AAGNNNNNCTT 2 cut(s) 1339, 1371
FaqI GGGAC 1 cut(s) 619
FatI CATG 4 cut(s) 259, 873, 882, 1259
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 4 cut(s) 133, 136, 459, 1477
FokI GGATG 7 cut(s) 511, 892, 1070, 1253, 1318, 1403, 1451
Fsp4HI GCNGC 4 cut(s) 133, 136, 459, 1477
FspBI CTAG 5 cut(s) 725, 737, 911, 1119, 1461
GlaI GCGC 1 cut(s) 858
GluI GCNGC 4 cut(s) 133, 136, 459, 1477
GsuI CTGGAG 1 cut(s) 1383
HaeIII GGCC 4 cut(s) 253, 415, 802, 904
HapII CCGG 2 cut(s) 87, 582
HhaI GCGC 1 cut(s) 859
Hin1II CATG 4 cut(s) 263, 877, 886, 1263
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HindIII AAGCTT 1 cut(s) 1109
HinfI GANTC 4 cut(s) 96, 170, 230, 484
HpaII CCGG 2 cut(s) 87, 582
HphI GGTGA 3 cut(s) 386, 1150, 1508
Hpy166II GTNNAC 5 cut(s) 76, 127, 396, 1158, 1237
Hpy188I TCNGA 2 cut(s) 57, 219
Hpy188III TCNNGA 3 cut(s) 974, 1014, 1362
Hpy8I GTNNAC 5 cut(s) 76, 127, 396, 1158, 1237
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 5 cut(s) 62, 199, 532, 1285, 1440
HpyCH4III ACNGT 5 cut(s) 609, 675, 817, 853, 1180
HpyCH4IV ACGT 2 cut(s) 212, 990
HpyF10VI GCNNNNNNNGC 4 cut(s) 467, 1203, 1325, 1457
HpyF3I CTNAG 3 cut(s) 56, 966, 1434
HpySE526I ACGT 2 cut(s) 212, 990
Hsp92II CATG 4 cut(s) 263, 877, 886, 1263
HspAI GCGC 1 cut(s) 857
Kzo9I GATC 5 cut(s) 343, 657, 810, 1006, 1263
LguI GCTCTTC 1 cut(s) 21
Lsp1109I GCAGC 3 cut(s) 147, 445, 1488
LweI GCATC 3 cut(s) 726, 1048, 1357
MaeI CTAG 5 cut(s) 725, 737, 911, 1119, 1461
MaeII ACGT 2 cut(s) 212, 990
MaeIII GTNAC 2 cut(s) 208, 1174
MalI GATC 5 cut(s) 345, 659, 812, 1008, 1265
MboI GATC 5 cut(s) 343, 657, 810, 1006, 1263
MflI RGATCY 2 cut(s) 343, 657
MhlI GDGCHC 3 cut(s) 48, 1321, 1330
MluCI AATT 5 cut(s) 144, 238, 505, 712, 779
MlyI GAGTC 1 cut(s) 164
Mph1103I ATGCAT 1 cut(s) 1261
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 6 cut(s) 843, 863, 947, 1103, 1134, 1487
MspI CCGG 2 cut(s) 87, 582
MspR9I CCNGG 3 cut(s) 408, 583, 594
Mva1269I GAATGC 1 cut(s) 1261
MvaI CCWGG 2 cut(s) 408, 594
MvnI CGCG 1 cut(s) 859
MwoI GCNNNNNNNGC 4 cut(s) 467, 1203, 1325, 1457
NciI CCSGG 1 cut(s) 583
NcoI CCATGG 1 cut(s) 882
NdeI CATATG 1 cut(s) 310
NdeII GATC 5 cut(s) 343, 657, 810, 1006, 1263
NlaIII CATG 4 cut(s) 263, 877, 886, 1263
NlaIV GGNNCC 2 cut(s) 606, 1329
NsiI ATGCAT 1 cut(s) 1261
PciSI GCTCTTC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 135
PctI GAATGC 1 cut(s) 1261
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 3 cut(s) 96, 230, 484
PkrI GCNGC 4 cut(s) 134, 137, 460, 1478
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PshAI GACNNNNGTC 1 cut(s) 794
Psp1406I AACGTT 1 cut(s) 990
Psp6I CCWGG 2 cut(s) 406, 592
PspGI CCWGG 2 cut(s) 406, 592
PspN4I GGNNCC 2 cut(s) 606, 1329
PspPI GGNCC 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 1178
PsuI RGATCY 2 cut(s) 343, 657
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 6 cut(s) 843, 863, 947, 1103, 1134, 1487
SatI GCNGC 4 cut(s) 133, 136, 459, 1477
Sau3AI GATC 5 cut(s) 343, 657, 810, 1006, 1263
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 408, 583, 594
SduI GDGCHC 3 cut(s) 48, 1321, 1330
SfaNI GCATC 3 cut(s) 726, 1048, 1357
SmlI CTYRAG 3 cut(s) 417, 746, 974
SmoI CTYRAG 3 cut(s) 417, 746, 974
SpeI ACTAGT 1 cut(s) 724
Sse9I AATT 5 cut(s) 144, 238, 505, 712, 779
SsiI CCGC 2 cut(s) 132, 174
SspI AATATT 1 cut(s) 1053
SspMI CTAG 5 cut(s) 725, 737, 911, 1119, 1461
StyD4I CCNGG 3 cut(s) 406, 581, 592
StyI CCWWGG 3 cut(s) 177, 882, 910
TaaI ACNGT 5 cut(s) 609, 675, 817, 853, 1180
TaiI ACGT 2 cut(s) 215, 993
TasI AATT 5 cut(s) 144, 238, 505, 712, 779
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 3 cut(s) 96, 230, 484
Tru1I TTAA 6 cut(s) 843, 863, 947, 1103, 1134, 1487
Tru9I TTAA 6 cut(s) 843, 863, 947, 1103, 1134, 1487
TscAI CASTG 3 cut(s) 343, 820, 1253
TseI GCWGC 3 cut(s) 135, 458, 1476
TspDTI ATGAA 6 cut(s) 466, 476, 505, 819, 1057, 1407
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 3 cut(s) 343, 820, 1253
XapI RAATTY 2 cut(s) 144, 779
XmaJI CCTAGG 1 cut(s) 910
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 5 cut(s) 725, 737, 911, 1119, 1461
Zsp2I ATGCAT 1 cut(s) 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.