FvH4_6g35090

Transmembrane protein 87A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016015
Physical Location & Seq
Forward (+)
27735382 .. 27738707
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35090.t1

Sequence Viewer

Length: 1509 bp
ATGCGGTACTCTGCTCTTCTACTTGTCCTGGTGTGCCTTTCGAGTGTGGAAGCCTCCATCCACCACTACTCCGGAGACAGATTCGTATCCAAAGGTAACGCCTTTGTCGTCCACGGCGGCAGTGAGGGAATTTACTCTTCTGCCCCCGCCGACGACTCCTCCAAGGACAACTCTTACATCCGCTTTGATAAGGTTACATTTCGGAGAAGCAAAGAATCGGCTAATTCCAGCTCATTGTCTGTCCATGCCATTGTTTTTGAGGTGGAAGATAGAGAGAACATTGGGGGTTCAGCATACGGAGGTCAAAGAGCAGTATGTTGCACTGGGGATCTTGCGAAGCTAGGTGTGTGTACACAAGGTGACATCATTTACCGCCCGTCCACTAAGAACCCAGGTTGGCCTCAAGTGTTTGGTGTTTCTTTTGAAGTAGATGAGGAAGTTGCCACATTGCCATCCAAGTTCATACCGATTCATAAGACCGGGATGTATAATTTGTATTTCATACATTGTGATTTGAAGTTGAAGGATCTGGTGGTAGAGGGGAATACTATATGGAAAAACCCTACCGGGTATTTGCCTGGTAGAATGGCACCTTTTATGCTTTTTTACGGGTTTATGTCCCTTGCTTTTGTCATACTTGGGATCTTTTGGTTCTCGCAGTATGCAAGGTTTTGGAGAGAAGTTCTTCCATTGCAGAATTGCATCACGCTAGTAATAACACTAGGTATGCTTGAGATGGCTTTGTGGTATTTTGAGTACGCTGAATTCAACGAGACTGGGGTCAGGCCAACTGGGATTACTGTGTGGGCAGTTTCATTTGGTGCAGTTAAACGAACAGTAGCACGTTTAATACTTCTCATGGTCTCCATGGGCTACGGGGTTGTAAGGCCATCCCTAGGTGGGCTTACATCAAAAGTGATTTTTCTTGGATTAACATTCTTCTTGGCAACAGAGGTTCTTGAGATGGTAGAAAATGTTGGTGCAGTTAGTGATCTTTCTGGAAAGGCAAGGTTGTTCTTGGTTCTTCCTGTGGCAATTTTGGATGCTTTCTTCATTCTTTGGATTTTTACTTCTCTGTCTGCAACTTTAAATAAGCTTCAGGCTAGGCGAATGATGGTTAAGGTGGATATATACAGGAAGTTCACCAATGCTTTGGCAGTAACTGTTATAGTATCTGTGGGCTGGATATGTTATGAGCTATATTACAAGTCAAATGATGTTTACAATGAGCAGTGGCAGAATGCATGGATAATCCCTGCCTTCTGGCAAGTTTTATCTTTCTCTCTCCTATGTGTCATTTGTGCTCTTTGGGCACCATCCCAGAACTCAACAAGGTATGCTTACTCTGGAGATGCAAGTGAAGAGTTTGACAGGGATGAAACTACTTTAACCCTCATAAAACCATCTCTACTGCCGTCTAAGGATGTCCATAGCGCGCCAGAAGCTAGAGCGGTGCAAGCCAGCAATGGATTAGCAAATGGTGATGAGGAAGAGGACAAGATAGAGTGA

Protein Analysis

503

Amino Acids

55.99

Weight (kDa)

5.77

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 198 - 443 1.1e-90 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72480
fragaria_vesca FvH4_6g35090
malus_domestica MD09G1178800.v1.1 MD17G1164600.v1.1
prunus_persica Prupe.3G038100_v2.0.a1
pyrus_communis pycom09g09720 pycom17g15770
rosa_chinensis RchiOBHm_Chr2g0146271
rosa_laevigata RLG00000020191
rosa_multiflora Rmu_sc0002054.1_g000015
rosa_roxburghii Rroxscaffold_2G00100190
rosa_rugosa Rorug02G0394100
rosa_samantha Rh2BG462500 Rh2DG471700
rosa_wichuraiana Rw2G036750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 589, 1312
AccBSI CCGCTC 1 cut(s) 1451
AccII CGCG 1 cut(s) 1436
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 6 cut(s) 4, 117, 147, 181, 373, 1451
AclWI GGATC 3 cut(s) 336, 534, 650
AcsI RAATTY 2 cut(s) 129, 764
AcuI CTGAAG 1 cut(s) 1082
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 3 cut(s) 8, 352, 758
AfiI CCNNNNNNNGG 2 cut(s) 896, 900
AgsI TTSAA 4 cut(s) 425, 517, 523, 769
AjnI CCWGG 3 cut(s) 27, 391, 577
AluBI AGCT 5 cut(s) 231, 340, 1096, 1198, 1445
AluI AGCT 5 cut(s) 231, 340, 1096, 1198, 1445
Alw21I GWGCWC 1 cut(s) 1306
Alw26I GTCTC 3 cut(s) 69, 767, 868
AlwI GGATC 3 cut(s) 336, 534, 650
AlwNI CAGNNNCTG 1 cut(s) 1163
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 3 cut(s) 398, 785, 887
ApoI RAATTY 2 cut(s) 129, 764
Asp700I GAANNNNTTC 1 cut(s) 684
AspA2I CCTAGG 1 cut(s) 895
AspLEI GCGC 2 cut(s) 1436, 1438
AsuC2I CCSGG 2 cut(s) 481, 568
AsuHPI GGTGA 3 cut(s) 371, 1135, 1493
AvrII CCTAGG 1 cut(s) 895
BaeGI GKGCMC 1 cut(s) 1315
BanI GGYRCC 2 cut(s) 589, 1312
Bbv12I GWGCWC 1 cut(s) 1306
BccI CCATC 8 cut(s) 65, 460, 730, 898, 958, 1108, 1324, 1411
BceAI ACGGC 2 cut(s) 130, 1399
BciT130I CCWGG 3 cut(s) 29, 393, 579
BciVI GTATCC 1 cut(s) 97
BcnI CCSGG 2 cut(s) 481, 568
BcoDI GTCTC 3 cut(s) 69, 767, 868
BfaI CTAG 6 cut(s) 341, 710, 722, 896, 1104, 1446
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 1 cut(s) 118
BlnI CCTAGG 1 cut(s) 895
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 5 cut(s) 29, 393, 481, 568, 579
BmiI GGNNCC 2 cut(s) 591, 1314
BmrFI CCNGG 5 cut(s) 29, 393, 481, 568, 579
BmrI ACTGGG 3 cut(s) 333, 786, 801
BmsI GCATC 3 cut(s) 711, 1033, 1342
BmuI ACTGGG 3 cut(s) 333, 786, 801
BoxI GACNNNNGTC 1 cut(s) 779
BpmI CTGGAG 1 cut(s) 1368
BpuEI CTTGAG 3 cut(s) 387, 752, 980
BpuMI CCSGG 2 cut(s) 481, 568
BsaBI GATNNNNATC 1 cut(s) 85
BsaI GGTCTC 1 cut(s) 868
BsaJI CCNNGG 5 cut(s) 112, 162, 391, 867, 895
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 896, 900
Bse1I ACTGG 3 cut(s) 328, 781, 796
Bse3DI GCAATG 3 cut(s) 446, 689, 1471
Bse8I GATNNNNATC 1 cut(s) 85
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 3 cut(s) 29, 393, 579
BseDI CCNNGG 5 cut(s) 112, 162, 391, 867, 895
BseGI GGATG 9 cut(s) 57, 177, 452, 489, 890, 1048, 1316, 1381, 1429
BseJI GATNNNNATC 1 cut(s) 85
BseLI CCNNNNNNNGG 2 cut(s) 896, 900
BseMI GCAATG 3 cut(s) 446, 689, 1471
BseNI ACTGG 3 cut(s) 328, 781, 796
BsePI GCGCGC 1 cut(s) 1434
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 1315
BsgI GTGCAG 2 cut(s) 843, 1002
Bsh1236I CGCG 1 cut(s) 1436
BshFI GGCC 3 cut(s) 400, 787, 889
BshNI GGYRCC 2 cut(s) 589, 1312
BsiHKAI GWGCWC 1 cut(s) 1306
BsiSI CCGG 3 cut(s) 72, 480, 567
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 2 cut(s) 896, 900
BsmAI GTCTC 3 cut(s) 69, 767, 868
BsmFI GGGAC 1 cut(s) 604
BsmI GAATGC 1 cut(s) 1246
BsnI GGCC 3 cut(s) 400, 787, 889
Bso31I GGTCTC 1 cut(s) 868
Bsp1286I GDGCHC 2 cut(s) 1306, 1315
Bsp13I TCCGGA 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 350
Bsp143I GATC 4 cut(s) 328, 526, 642, 991
Bsp19I CCATGG 1 cut(s) 867
BspACI CCGC 6 cut(s) 4, 117, 147, 181, 373, 1451
BspANI GGCC 3 cut(s) 400, 787, 889
BspEI TCCGGA 1 cut(s) 71
BspFNI CGCG 1 cut(s) 1436
BspLI GGNNCC 2 cut(s) 591, 1314
BspPI GGATC 3 cut(s) 336, 534, 650
BspQI GCTCTTC 1 cut(s) 21
BspT107I GGYRCC 2 cut(s) 589, 1312
BspTNI GGTCTC 1 cut(s) 868
BsrBI CCGCTC 1 cut(s) 1451
BsrDI GCAATG 3 cut(s) 446, 689, 1471
BsrGI TGTACA 1 cut(s) 350
BsrI ACTGG 3 cut(s) 328, 781, 796
BssECI CCNNGG 5 cut(s) 112, 162, 391, 867, 895
BssHII GCGCGC 1 cut(s) 1434
BssMI GATC 4 cut(s) 328, 526, 642, 991
BssT1I CCWWGG 3 cut(s) 162, 867, 895
Bst2UI CCWGG 3 cut(s) 29, 393, 579
Bst4CI ACNGT 3 cut(s) 802, 838, 1165
Bst6I CTCTTC 4 cut(s) 21, 142, 1356, 1485
BstAUI TGTACA 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 1436, 1458, 1462
BstDEI CTNAG 2 cut(s) 384, 1419
BstDSI CCRYGG 2 cut(s) 112, 867
BstF5I GGATG 9 cut(s) 57, 177, 452, 489, 890, 1048, 1316, 1381, 1429
BstFNI CGCG 1 cut(s) 1436
BstHHI GCGC 2 cut(s) 1436, 1438
BstKTI GATC 4 cut(s) 331, 529, 645, 994
BstMAI GTCTC 3 cut(s) 69, 767, 868
BstMBI GATC 4 cut(s) 328, 526, 642, 991
BstMWI GCNNNNNNNGC 3 cut(s) 1310, 1442, 1457
BstNI CCWGG 3 cut(s) 29, 393, 579
BstPAI GACNNNNGTC 1 cut(s) 779
BstSCI CCNGG 5 cut(s) 27, 391, 479, 566, 577
BstSLI GKGCMC 1 cut(s) 1315
BstUI CGCG 1 cut(s) 1436
BstX2I RGATCY 3 cut(s) 328, 526, 642
BstXI CCANNNNNNTGG 1 cut(s) 1153
BstYI RGATCY 3 cut(s) 328, 526, 642
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 3 cut(s) 400, 787, 889
BtgI CCRYGG 2 cut(s) 112, 867
BtsCI GGATG 9 cut(s) 57, 177, 452, 489, 890, 1048, 1316, 1381, 1429
BtsI GCAGTG 2 cut(s) 127, 1238
BtsIMutI CAGTG 3 cut(s) 127, 321, 1238
Cac8I GCNNGC 3 cut(s) 1436, 1458, 1462
CaiI CAGNNNCTG 1 cut(s) 1163
CfoI GCGC 2 cut(s) 1436, 1438
Csp6I GTAC 3 cut(s) 7, 351, 757
CviAII CATG 4 cut(s) 245, 859, 868, 1245
CviQI GTAC 3 cut(s) 7, 351, 757
DdeI CTNAG 2 cut(s) 384, 1419
DpnI GATC 4 cut(s) 330, 528, 644, 993
DpnII GATC 4 cut(s) 328, 526, 642, 991
DraI TTTAAA 1 cut(s) 1089
DraIII CACNNNGTG 1 cut(s) 359
Eam1104I CTCTTC 4 cut(s) 21, 142, 1356, 1485
EarI CTCTTC 4 cut(s) 21, 142, 1356, 1485
Eco130I CCWWGG 3 cut(s) 162, 867, 895
Eco31I GGTCTC 1 cut(s) 868
Eco57I CTGAAG 1 cut(s) 1082
EcoRI GAATTC 1 cut(s) 764
EcoRII CCWGG 3 cut(s) 27, 391, 577
EcoT14I CCWWGG 3 cut(s) 162, 867, 895
EcoT22I ATGCAT 1 cut(s) 1246
ErhI CCWWGG 3 cut(s) 162, 867, 895
FaeI CATG 4 cut(s) 248, 862, 871, 1248
FalI AAGNNNNNCTT 2 cut(s) 1324, 1356
FaqI GGGAC 1 cut(s) 604
FatI CATG 4 cut(s) 244, 858, 867, 1244
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 9 cut(s) 44, 164, 439, 496, 877, 1055, 1303, 1388, 1436
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 6 cut(s) 341, 710, 722, 896, 1104, 1446
GlaI GCGC 2 cut(s) 1435, 1437
GluI GCNGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 1368
HaeIII GGCC 3 cut(s) 400, 787, 889
HapII CCGG 3 cut(s) 72, 480, 567
HhaI GCGC 2 cut(s) 1436, 1438
Hin1II CATG 4 cut(s) 248, 862, 871, 1248
Hin6I GCGC 2 cut(s) 1434, 1436
HinP1I GCGC 2 cut(s) 1434, 1436
HindIII AAGCTT 1 cut(s) 1094
HinfI GANTC 4 cut(s) 81, 155, 215, 469
HpaII CCGG 3 cut(s) 72, 480, 567
HphI GGTGA 3 cut(s) 371, 1135, 1493
Hpy166II GTNNAC 6 cut(s) 112, 351, 353, 381, 1143, 1222
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 4 cut(s) 72, 959, 999, 1347
Hpy8I GTNNAC 6 cut(s) 112, 351, 353, 381, 1143, 1222
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 517, 1270
HpyCH4III ACNGT 3 cut(s) 802, 838, 1165
HpyCH4IV ACGT 1 cut(s) 844
HpyF10VI GCNNNNNNNGC 3 cut(s) 1310, 1442, 1457
HpyF3I CTNAG 2 cut(s) 384, 1419
HpySE526I ACGT 1 cut(s) 844
Hsp92II CATG 4 cut(s) 248, 862, 871, 1248
HspAI GCGC 2 cut(s) 1434, 1436
Kpn2I TCCGGA 1 cut(s) 71
Kzo9I GATC 4 cut(s) 328, 526, 642, 991
LguI GCTCTTC 1 cut(s) 21
LweI GCATC 3 cut(s) 711, 1033, 1342
MaeI CTAG 6 cut(s) 341, 710, 722, 896, 1104, 1446
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 4 cut(s) 95, 193, 359, 1159
MalI GATC 4 cut(s) 330, 528, 644, 993
MbiI CCGCTC 1 cut(s) 1451
MboI GATC 4 cut(s) 328, 526, 642, 991
MboII GAAGA 9 cut(s) 8, 129, 278, 677, 931, 1016, 1042, 1373, 1502
MflI RGATCY 3 cut(s) 328, 526, 642
MhlI GDGCHC 2 cut(s) 1306, 1315
MluCI AATT 6 cut(s) 129, 223, 490, 697, 764, 1035
MlyI GAGTC 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 1246
MroI TCCGGA 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 6 cut(s) 828, 848, 932, 1088, 1119, 1388
MspI CCGG 3 cut(s) 72, 480, 567
MspR9I CCNGG 5 cut(s) 29, 393, 481, 568, 579
Mva1269I GAATGC 1 cut(s) 1246
MvaI CCWGG 3 cut(s) 29, 393, 579
MvnI CGCG 1 cut(s) 1436
MwoI GCNNNNNNNGC 3 cut(s) 1310, 1442, 1457
NciI CCSGG 2 cut(s) 481, 568
NcoI CCATGG 1 cut(s) 867
NdeII GATC 4 cut(s) 328, 526, 642, 991
NlaIII CATG 4 cut(s) 248, 862, 871, 1248
NlaIV GGNNCC 2 cut(s) 591, 1314
NmuCI GTSAC 1 cut(s) 359
NsiI ATGCAT 1 cut(s) 1246
PauI GCGCGC 1 cut(s) 1434
PciSI GCTCTTC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 1246
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 3 cut(s) 81, 215, 469
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PshAI GACNNNNGTC 1 cut(s) 779
Psp6I CCWGG 3 cut(s) 27, 391, 577
PspGI CCWGG 3 cut(s) 27, 391, 577
PspN4I GGNNCC 2 cut(s) 591, 1314
PstNI CAGNNNCTG 1 cut(s) 1163
PsuI RGATCY 3 cut(s) 328, 526, 642
PteI GCGCGC 1 cut(s) 1434
RsaI GTAC 3 cut(s) 8, 352, 758
RsaNI GTAC 3 cut(s) 7, 351, 757
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 6 cut(s) 828, 848, 932, 1088, 1119, 1388
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 4 cut(s) 328, 526, 642, 991
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 5 cut(s) 29, 393, 481, 568, 579
SduI GDGCHC 2 cut(s) 1306, 1315
SfaNI GCATC 3 cut(s) 711, 1033, 1342
SmlI CTYRAG 3 cut(s) 402, 731, 959
SmoI CTYRAG 3 cut(s) 402, 731, 959
Sse9I AATT 6 cut(s) 129, 223, 490, 697, 764, 1035
SsiI CCGC 6 cut(s) 4, 117, 147, 181, 373, 1451
SspMI CTAG 6 cut(s) 341, 710, 722, 896, 1104, 1446
StyD4I CCNGG 5 cut(s) 27, 391, 479, 566, 577
StyI CCWWGG 3 cut(s) 162, 867, 895
TaaI ACNGT 3 cut(s) 802, 838, 1165
TaiI ACGT 1 cut(s) 847
TaqI TCGA 1 cut(s) 41
TasI AATT 6 cut(s) 129, 223, 490, 697, 764, 1035
TatI WGTACW 1 cut(s) 350
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 3 cut(s) 81, 215, 469
Tru1I TTAA 6 cut(s) 828, 848, 932, 1088, 1119, 1388
Tru9I TTAA 6 cut(s) 828, 848, 932, 1088, 1119, 1388
TscAI CASTG 3 cut(s) 127, 328, 1238
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 6 cut(s) 451, 461, 490, 804, 1042, 1392
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 3 cut(s) 127, 328, 1238
XapI RAATTY 2 cut(s) 129, 764
XmaJI CCTAGG 1 cut(s) 895
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 6 cut(s) 341, 710, 722, 896, 1104, 1446
Zsp2I ATGCAT 1 cut(s) 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.