AAA domain (dynein-related subfamily)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73170 AT1G73170 AT1G73170 AT1G73170 |
| fragaria_vesca | FvH4_3g18730 FvH4_3g18730 FvH4_3g18730 |
| malus_domestica | MD11G1259100.v1.1 |
| prunus_persica | Prupe.4G171000_v2.0.a1 Prupe.4G171000_v2.0.a1 Prupe.4G171000_v2.0.a1 |
| pyrus_communis | pycom11g22860 |
| rosa_chinensis | RchiOBHm_Chr5g0031521 |
| rosa_laevigata | RLG00000033320 |
| rosa_multiflora | Rmu_sc0009888.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00048770 |
| rosa_rugosa | Rorug05G0126900 |
| rosa_samantha | Rh5AG219800 Rh5BG219200 Rh5CG242800 Rh5DG224600 |
| rosa_wichuraiana | Rw5G020050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1139 |
| AccBSI | CCGCTC | 1 cut(s) | 1705 |
| AccI | GTMKAC | 1 cut(s) | 1540 |
| AccII | CGCG | 2 cut(s) | 355, 1481 |
| AccIII | TCCGGA | 1 cut(s) | 205 |
| AciI | CCGC | 4 cut(s) | 760, 1174, 1436, 1705 |
| AclI | AACGTT | 1 cut(s) | 1164 |
| AclWI | GGATC | 2 cut(s) | 752, 1645 |
| AcoI | YGGCCR | 2 cut(s) | 1027, 1581 |
| AcsI | RAATTY | 3 cut(s) | 136, 413, 940 |
| AcuI | CTGAAG | 8 cut(s) | 177, 308, 348, 1119, 1326, 1329, 1353, 1388 |
| AcyI | GRCGYC | 1 cut(s) | 1674 |
| AdeI | CACNNNGTG | 1 cut(s) | 796 |
| AfaI | GTAC | 3 cut(s) | 264, 883, 984 |
| AfeI | AGCGCT | 1 cut(s) | 559 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 623, 740, 746 |
| AgsI | TTSAA | 9 cut(s) | 584, 866, 1046, 1062, 1092, 1124, 1169, 1316, 1772 |
| AjnI | CCWGG | 2 cut(s) | 616, 739 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1881, 1913 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 48, 80, 885, 917 |
| AluBI | AGCT | 7 cut(s) | 9, 73, 458, 875, 1282, 1780, 1921 |
| AluI | AGCT | 7 cut(s) | 9, 73, 458, 875, 1282, 1780, 1921 |
| Alw21I | GWGCWC | 1 cut(s) | 297 |
| Alw26I | GTCTC | 4 cut(s) | 1191, 1306, 1770, 1866 |
| AlwI | GGATC | 2 cut(s) | 752, 1645 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 286 |
| Ama87I | CYCGRG | 1 cut(s) | 1744 |
| Aor13HI | TCCGGA | 1 cut(s) | 205 |
| Aor51HI | AGCGCT | 1 cut(s) | 559 |
| AoxI | GGCC | 3 cut(s) | 1027, 1581, 1748 |
| ApeKI | GCWGC | 2 cut(s) | 568, 875 |
| ApoI | RAATTY | 3 cut(s) | 136, 413, 940 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1311 |
| AspA2I | CCTAGG | 1 cut(s) | 1754 |
| AspLEI | GCGC | 3 cut(s) | 259, 355, 560 |
| AspS9I | GGNCC | 3 cut(s) | 223, 611, 1055 |
| AsuC2I | CCSGG | 1 cut(s) | 1510 |
| AsuHPI | GGTGA | 7 cut(s) | 92, 380, 446, 731, 737, 1276, 1953 |
| AsuII | TTCGAA | 1 cut(s) | 1277 |
| AvaI | CYCGRG | 1 cut(s) | 1744 |
| AvaII | GGWCC | 3 cut(s) | 223, 611, 1055 |
| AvrII | CCTAGG | 1 cut(s) | 1754 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1555, 1588 |
| BalI | TGGCCA | 2 cut(s) | 1029, 1583 |
| BbsI | GAAGAC | 6 cut(s) | 144, 183, 222, 1040, 1241, 1623 |
| Bbv12I | GWGCWC | 1 cut(s) | 297 |
| BbvI | GCAGC | 2 cut(s) | 555, 862 |
| BccI | CCATC | 3 cut(s) | 581, 716, 1420 |
| BceAI | ACGGC | 1 cut(s) | 516 |
| BciT130I | CCWGG | 2 cut(s) | 618, 741 |
| BciVI | GTATCC | 1 cut(s) | 1583 |
| BcnI | CCSGG | 1 cut(s) | 1510 |
| BcoDI | GTCTC | 4 cut(s) | 1191, 1306, 1770, 1866 |
| BfaI | CTAG | 5 cut(s) | 662, 756, 1421, 1755, 1781 |
| BfmI | CTRYAG | 1 cut(s) | 885 |
| BfoI | RGCGCY | 2 cut(s) | 260, 561 |
| BfuAI | ACCTGC | 1 cut(s) | 1139 |
| BfuI | GTATCC | 1 cut(s) | 1583 |
| BglII | AGATCT | 1 cut(s) | 406 |
| BisI | GCNGC | 2 cut(s) | 569, 876 |
| BlnI | CCTAGG | 1 cut(s) | 1754 |
| BlpI | GCTNAGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 2 cut(s) | 570, 877 |
| BmcAI | AGTACT | 1 cut(s) | 883 |
| Bme1390I | CCNGG | 3 cut(s) | 618, 741, 1510 |
| Bme18I | GGWCC | 3 cut(s) | 223, 611, 1055 |
| BmeT110I | CYCGRG | 1 cut(s) | 1744 |
| BmgT120I | GGNCC | 3 cut(s) | 223, 611, 1055 |
| BmiI | GGNNCC | 2 cut(s) | 928, 1218 |
| BmrFI | CCNGG | 3 cut(s) | 618, 741, 1510 |
| BmsI | GCATC | 6 cut(s) | 191, 379, 487, 753, 1126, 1980 |
| BpiI | GAAGAC | 6 cut(s) | 144, 183, 222, 1040, 1241, 1623 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 979, 1011 |
| BpmI | CTGGAG | 1 cut(s) | 600 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5 |
| Bpu14I | TTCGAA | 1 cut(s) | 1277 |
| BpuEI | CTTGAG | 2 cut(s) | 53, 67 |
| BpuMI | CCSGG | 1 cut(s) | 1510 |
| Bsa29I | ATCGAT | 1 cut(s) | 1974 |
| BsaHI | GRCGYC | 1 cut(s) | 1674 |
| BsaJI | CCNNGG | 6 cut(s) | 740, 1287, 1508, 1584, 1745, 1754 |
| BsaWI | WCCGGW | 2 cut(s) | 205, 265 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1185, 1215, 1830, 1860 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 623, 740, 746 |
| Bse118I | RCCGGY | 1 cut(s) | 1943 |
| Bse1I | ACTGG | 1 cut(s) | 904 |
| BseAI | TCCGGA | 1 cut(s) | 205 |
| BseBI | CCWGG | 2 cut(s) | 618, 741 |
| BseCI | ATCGAT | 1 cut(s) | 1974 |
| BseDI | CCNNGG | 6 cut(s) | 740, 1287, 1508, 1584, 1745, 1754 |
| BseGI | GGATG | 3 cut(s) | 736, 768, 1831 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 623, 740, 746 |
| BseMII | CTCAG | 2 cut(s) | 440, 1581 |
| BseNI | ACTGG | 1 cut(s) | 904 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 2 cut(s) | 555, 862 |
| BsgI | GTGCAG | 1 cut(s) | 1098 |
| Bsh1236I | CGCG | 2 cut(s) | 355, 1481 |
| Bsh1285I | CGRYCG | 2 cut(s) | 86, 1879 |
| BshFI | GGCC | 3 cut(s) | 1029, 1583, 1750 |
| BshVI | ATCGAT | 1 cut(s) | 1974 |
| BsiEI | CGRYCG | 2 cut(s) | 86, 1879 |
| BsiHKAI | GWGCWC | 1 cut(s) | 297 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1744 |
| BsiSI | CCGG | 5 cut(s) | 206, 266, 469, 1510, 1944 |
| BslFI | GGGAC | 1 cut(s) | 755 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 623, 740, 746 |
| BsmAI | GTCTC | 4 cut(s) | 1191, 1306, 1770, 1866 |
| BsmBI | CGTCTC | 1 cut(s) | 1866 |
| BsmFI | GGGAC | 1 cut(s) | 755 |
| BsmI | GAATGC | 1 cut(s) | 663 |
| BsnI | GGCC | 3 cut(s) | 1029, 1583, 1750 |
| BsoBI | CYCGRG | 1 cut(s) | 1744 |
| Bsp119I | TTCGAA | 1 cut(s) | 1277 |
| Bsp1286I | GDGCHC | 1 cut(s) | 297 |
| Bsp13I | TCCGGA | 1 cut(s) | 205 |
| Bsp1407I | TGTACA | 1 cut(s) | 982 |
| Bsp143I | GATC | 9 cut(s) | 83, 406, 542, 574, 744, 1494, 1637, 1645, 1802 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5 |
| BspACI | CCGC | 4 cut(s) | 760, 1174, 1436, 1705 |
| BspANI | GGCC | 3 cut(s) | 1029, 1583, 1750 |
| BspCNI | CTCAG | 2 cut(s) | 439, 1580 |
| BspDI | ATCGAT | 1 cut(s) | 1974 |
| BspEI | TCCGGA | 1 cut(s) | 205 |
| BspFNI | CGCG | 2 cut(s) | 355, 1481 |
| BspLI | GGNNCC | 2 cut(s) | 928, 1218 |
| BspMI | ACCTGC | 1 cut(s) | 1139 |
| BspPI | GGATC | 2 cut(s) | 752, 1645 |
| BspQI | GCTCTTC | 1 cut(s) | 1911 |
| BspT104I | TTCGAA | 1 cut(s) | 1277 |
| BsrBI | CCGCTC | 1 cut(s) | 1705 |
| BsrFI | RCCGGY | 1 cut(s) | 1943 |
| BsrGI | TGTACA | 1 cut(s) | 982 |
| BsrI | ACTGG | 1 cut(s) | 904 |
| BssAI | RCCGGY | 1 cut(s) | 1943 |
| BssECI | CCNNGG | 6 cut(s) | 740, 1287, 1508, 1584, 1745, 1754 |
| BssMI | GATC | 9 cut(s) | 83, 406, 542, 574, 744, 1494, 1637, 1645, 1802 |
| BssNAI | GTATAC | 1 cut(s) | 1541 |
| BssNI | GRCGYC | 1 cut(s) | 1674 |
| BssT1I | CCWWGG | 3 cut(s) | 1287, 1584, 1754 |
| Bst1107I | GTATAC | 1 cut(s) | 1541 |
| Bst2UI | CCWGG | 2 cut(s) | 618, 741 |
| Bst4CI | ACNGT | 8 cut(s) | 1039, 1073, 1132, 1240, 1300, 1399, 1538, 1880 |
| Bst6I | CTCTTC | 6 cut(s) | 113, 674, 1015, 1251, 1773, 1911 |
| BstACI | GRCGYC | 1 cut(s) | 1674 |
| BstAUI | TGTACA | 1 cut(s) | 982 |
| BstBI | TTCGAA | 1 cut(s) | 1277 |
| BstC8I | GCNNGC | 1 cut(s) | 1488 |
| BstDEI | CTNAG | 6 cut(s) | 5, 117, 426, 1320, 1567, 1678 |
| BstEII | GGTNACC | 1 cut(s) | 1980 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 738 |
| BstF5I | GGATG | 3 cut(s) | 736, 768, 1831 |
| BstFNI | CGCG | 2 cut(s) | 355, 1481 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 561 |
| BstHHI | GCGC | 3 cut(s) | 259, 355, 560 |
| BstKTI | GATC | 9 cut(s) | 86, 409, 545, 577, 747, 1497, 1640, 1648, 1805 |
| BstMAI | GTCTC | 4 cut(s) | 1191, 1306, 1770, 1866 |
| BstMBI | GATC | 9 cut(s) | 83, 406, 542, 574, 744, 1494, 1637, 1645, 1802 |
| BstMCI | CGRYCG | 2 cut(s) | 86, 1879 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 179, 875, 926, 1145, 1478, 1487, 1595, 1694 |
| BstNI | CCWGG | 2 cut(s) | 618, 741 |
| BstPI | GGTNACC | 1 cut(s) | 1980 |
| BstSCI | CCNGG | 3 cut(s) | 616, 739, 1508 |
| BstSFI | CTRYAG | 1 cut(s) | 885 |
| BstUI | CGCG | 2 cut(s) | 355, 1481 |
| BstV1I | GCAGC | 2 cut(s) | 555, 862 |
| BstV2I | GAAGAC | 6 cut(s) | 144, 183, 222, 1040, 1241, 1623 |
| BstX2I | RGATCY | 1 cut(s) | 406 |
| BstYI | RGATCY | 1 cut(s) | 406 |
| BstZ17I | GTATAC | 1 cut(s) | 1541 |
| Bsu15I | ATCGAT | 1 cut(s) | 1974 |
| BsuI | GTATCC | 1 cut(s) | 1583 |
| BsuRI | GGCC | 3 cut(s) | 1029, 1583, 1750 |
| BsuTUI | ATCGAT | 1 cut(s) | 1974 |
| BtsCI | GGATG | 3 cut(s) | 736, 768, 1831 |
| BtsI | GCAGTG | 1 cut(s) | 915 |
| BtsIMutI | CAGTG | 2 cut(s) | 284, 915 |
| BveI | ACCTGC | 1 cut(s) | 1139 |
| Cac8I | GCNNGC | 1 cut(s) | 1488 |
| CaiI | CAGNNNCTG | 1 cut(s) | 286 |
| CfoI | GCGC | 3 cut(s) | 259, 355, 560 |
| Cfr10I | RCCGGY | 1 cut(s) | 1943 |
| Cfr13I | GGNCC | 3 cut(s) | 223, 611, 1055 |
| ClaI | ATCGAT | 1 cut(s) | 1974 |
| CseI | GACGC | 1 cut(s) | 1682 |
| Csp6I | GTAC | 3 cut(s) | 263, 882, 983 |
| CviAII | CATG | 6 cut(s) | 26, 53, 161, 923, 1190, 1253 |
| CviQI | GTAC | 3 cut(s) | 263, 882, 983 |
| DdeI | CTNAG | 6 cut(s) | 5, 117, 426, 1320, 1567, 1678 |
| DpnI | GATC | 9 cut(s) | 85, 408, 544, 576, 746, 1496, 1639, 1647, 1804 |
| DpnII | GATC | 9 cut(s) | 83, 406, 542, 574, 744, 1494, 1637, 1645, 1802 |
| DraIII | CACNNNGTG | 1 cut(s) | 796 |
| EaeI | YGGCCR | 2 cut(s) | 1027, 1581 |
| Eam1104I | CTCTTC | 6 cut(s) | 113, 674, 1015, 1251, 1773, 1911 |
| EarI | CTCTTC | 6 cut(s) | 113, 674, 1015, 1251, 1773, 1911 |
| EciI | GGCGGA | 1 cut(s) | 775 |
| Eco130I | CCWWGG | 3 cut(s) | 1287, 1584, 1754 |
| Eco47I | GGWCC | 3 cut(s) | 223, 611, 1055 |
| Eco47III | AGCGCT | 1 cut(s) | 559 |
| Eco57I | CTGAAG | 8 cut(s) | 177, 308, 348, 1119, 1326, 1329, 1353, 1388 |
| Eco88I | CYCGRG | 1 cut(s) | 1744 |
| Eco91I | GGTNACC | 1 cut(s) | 1980 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 738 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1055 |
| EcoO65I | GGTNACC | 1 cut(s) | 1980 |
| EcoRI | GAATTC | 2 cut(s) | 136, 413 |
| EcoRII | CCWGG | 2 cut(s) | 616, 739 |
| EcoT14I | CCWWGG | 3 cut(s) | 1287, 1584, 1754 |
| ErhI | CCWWGG | 3 cut(s) | 1287, 1584, 1754 |
| Esp3I | CGTCTC | 1 cut(s) | 1866 |
| FaeI | CATG | 6 cut(s) | 29, 56, 164, 926, 1193, 1256 |
| FaqI | GGGAC | 1 cut(s) | 755 |
| FatI | CATG | 6 cut(s) | 25, 52, 160, 922, 1189, 1252 |
| FauNDI | CATATG | 1 cut(s) | 822 |
| FblI | GTMKAC | 1 cut(s) | 1540 |
| Fnu4HI | GCNGC | 2 cut(s) | 569, 876 |
| FokI | GGATG | 3 cut(s) | 723, 775, 1838 |
| Fsp4HI | GCNGC | 2 cut(s) | 569, 876 |
| FspBI | CTAG | 5 cut(s) | 662, 756, 1421, 1755, 1781 |
| GlaI | GCGC | 3 cut(s) | 258, 354, 559 |
| GluI | GCNGC | 2 cut(s) | 569, 876 |
| GsuI | CTGGAG | 1 cut(s) | 600 |
| HaeII | RGCGCY | 2 cut(s) | 260, 561 |
| HaeIII | GGCC | 3 cut(s) | 1029, 1583, 1750 |
| HapII | CCGG | 5 cut(s) | 206, 266, 469, 1510, 1944 |
| HgaI | GACGC | 1 cut(s) | 1682 |
| HhaI | GCGC | 3 cut(s) | 259, 355, 560 |
| Hin1I | GRCGYC | 1 cut(s) | 1674 |
| Hin1II | CATG | 6 cut(s) | 29, 56, 164, 926, 1193, 1256 |
| Hin6I | GCGC | 3 cut(s) | 257, 353, 558 |
| HinP1I | GCGC | 3 cut(s) | 257, 353, 558 |
| HincII | GTYRAC | 1 cut(s) | 1446 |
| HindII | GTYRAC | 1 cut(s) | 1446 |
| HpaI | GTTAAC | 1 cut(s) | 1446 |
| HpaII | CCGG | 5 cut(s) | 206, 266, 469, 1510, 1944 |
| HphI | GGTGA | 7 cut(s) | 92, 380, 446, 731, 737, 1276, 1953 |
| Hpy166II | GTNNAC | 6 cut(s) | 311, 344, 441, 983, 1446, 1541 |
| Hpy188III | TCNNGA | 9 cut(s) | 46, 206, 410, 584, 937, 1121, 1498, 1744, 1786 |
| Hpy8I | GTNNAC | 6 cut(s) | 311, 344, 441, 983, 1446, 1541 |
| Hpy99I | CGWCG | 3 cut(s) | 249, 389, 1232 |
| HpyAV | CCTTC | 9 cut(s) | 134, 283, 372, 966, 977, 1068, 1207, 1322, 1883 |
| HpyCH4III | ACNGT | 8 cut(s) | 1039, 1073, 1132, 1240, 1300, 1399, 1538, 1880 |
| HpyCH4IV | ACGT | 4 cut(s) | 244, 473, 895, 1164 |
| HpyCH4V | TGCA | 6 cut(s) | 478, 766, 878, 1079, 1388, 1486 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 179, 875, 926, 1145, 1478, 1487, 1595, 1694 |
| HpyF3I | CTNAG | 6 cut(s) | 5, 117, 426, 1320, 1567, 1678 |
| HpySE526I | ACGT | 4 cut(s) | 244, 473, 895, 1164 |
| Hsp92I | GRCGYC | 1 cut(s) | 1674 |
| Hsp92II | CATG | 6 cut(s) | 29, 56, 164, 926, 1193, 1256 |
| HspAI | GCGC | 3 cut(s) | 257, 353, 558 |
| Kpn2I | TCCGGA | 1 cut(s) | 205 |
| KspAI | GTTAAC | 1 cut(s) | 1446 |
| Kzo9I | GATC | 9 cut(s) | 83, 406, 542, 574, 744, 1494, 1637, 1645, 1802 |
| LguI | GCTCTTC | 1 cut(s) | 1911 |
| LmnI | GCTCC | 3 cut(s) | 78, 292, 926 |
| Lsp1109I | GCAGC | 2 cut(s) | 555, 862 |
| LweI | GCATC | 6 cut(s) | 191, 379, 487, 753, 1126, 1980 |
| MaeI | CTAG | 5 cut(s) | 662, 756, 1421, 1755, 1781 |
| MaeII | ACGT | 4 cut(s) | 244, 473, 895, 1164 |
| MaeIII | GTNAC | 4 cut(s) | 368, 991, 1552, 1980 |
| MalI | GATC | 9 cut(s) | 85, 408, 544, 576, 746, 1496, 1639, 1647, 1804 |
| MbiI | CCGCTC | 1 cut(s) | 1705 |
| MboI | GATC | 9 cut(s) | 83, 406, 542, 574, 744, 1494, 1637, 1645, 1802 |
| MflI | RGATCY | 1 cut(s) | 406 |
| MhlI | GDGCHC | 1 cut(s) | 297 |
| MlsI | TGGCCA | 2 cut(s) | 1029, 1583 |
| MluNI | TGGCCA | 2 cut(s) | 1029, 1583 |
| MlyI | GAGTC | 3 cut(s) | 1617, 1952, 1958 |
| MmeI | TCCRAC | 3 cut(s) | 309, 408, 955 |
| Mox20I | TGGCCA | 2 cut(s) | 1029, 1583 |
| MroI | TCCGGA | 1 cut(s) | 205 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1311 |
| MscI | TGGCCA | 2 cut(s) | 1029, 1583 |
| MseI | TTAA | 7 cut(s) | 38, 402, 524, 948, 1068, 1445, 1515 |
| MslI | CAYNNNNRTG | 1 cut(s) | 231 |
| Msp20I | TGGCCA | 2 cut(s) | 1029, 1583 |
| MspI | CCGG | 5 cut(s) | 206, 266, 469, 1510, 1944 |
| MspR9I | CCNGG | 3 cut(s) | 618, 741, 1510 |
| Mva1269I | GAATGC | 1 cut(s) | 663 |
| MvaI | CCWGG | 2 cut(s) | 618, 741 |
| MvnI | CGCG | 2 cut(s) | 355, 1481 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 179, 875, 926, 1145, 1478, 1487, 1595, 1694 |
| NciI | CCSGG | 1 cut(s) | 1510 |
| NdeI | CATATG | 1 cut(s) | 822 |
| NdeII | GATC | 9 cut(s) | 83, 406, 542, 574, 744, 1494, 1637, 1645, 1802 |
| NlaIII | CATG | 6 cut(s) | 29, 56, 164, 926, 1193, 1256 |
| NlaIV | GGNNCC | 2 cut(s) | 928, 1218 |
| NmuCI | GTSAC | 1 cut(s) | 368 |
| NspV | TTCGAA | 1 cut(s) | 1277 |
| PciSI | GCTCTTC | 1 cut(s) | 1911 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 185, 1111, 1944 |
| PctI | GAATGC | 1 cut(s) | 663 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1311 |
| PkrI | GCNGC | 2 cut(s) | 570, 877 |
| Ple19I | CGATCG | 1 cut(s) | 86 |
| PleI | GAGTC | 3 cut(s) | 1617, 1952, 1957 |
| PpsI | GAGTC | 3 cut(s) | 1617, 1952, 1957 |
| PpuMI | RGGWCCY | 1 cut(s) | 1055 |
| Psp1406I | AACGTT | 1 cut(s) | 1164 |
| Psp5II | RGGWCCY | 1 cut(s) | 1055 |
| Psp6I | CCWGG | 2 cut(s) | 616, 739 |
| PspEI | GGTNACC | 1 cut(s) | 1980 |
| PspGI | CCWGG | 2 cut(s) | 616, 739 |
| PspN4I | GGNNCC | 2 cut(s) | 928, 1218 |
| PspPI | GGNCC | 3 cut(s) | 223, 611, 1055 |
| PspPPI | RGGWCCY | 1 cut(s) | 1055 |
| PstNI | CAGNNNCTG | 1 cut(s) | 286 |
| PsuI | RGATCY | 1 cut(s) | 406 |
| PvuI | CGATCG | 1 cut(s) | 86 |
| RsaI | GTAC | 3 cut(s) | 264, 883, 984 |
| RsaNI | GTAC | 3 cut(s) | 263, 882, 983 |
| RseI | CAYNNNNRTG | 1 cut(s) | 231 |
| SapI | GCTCTTC | 1 cut(s) | 1911 |
| SaqAI | TTAA | 7 cut(s) | 38, 402, 524, 948, 1068, 1445, 1515 |
| SatI | GCNGC | 2 cut(s) | 569, 876 |
| Sau3AI | GATC | 9 cut(s) | 83, 406, 542, 574, 744, 1494, 1637, 1645, 1802 |
| Sau96I | GGNCC | 3 cut(s) | 223, 611, 1055 |
| ScaI | AGTACT | 1 cut(s) | 883 |
| SchI | GAGTC | 3 cut(s) | 1617, 1952, 1958 |
| ScrFI | CCNGG | 3 cut(s) | 618, 741, 1510 |
| SduI | GDGCHC | 1 cut(s) | 297 |
| SfaNI | GCATC | 6 cut(s) | 191, 379, 487, 753, 1126, 1980 |
| SfcI | CTRYAG | 1 cut(s) | 885 |
| SfuI | TTCGAA | 1 cut(s) | 1277 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1943 |
| SinI | GGWCC | 3 cut(s) | 223, 611, 1055 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 231 |
| SmlI | CTYRAG | 2 cut(s) | 46, 68 |
| SmoI | CTYRAG | 2 cut(s) | 46, 68 |
| SsiI | CCGC | 4 cut(s) | 760, 1174, 1436, 1705 |
| SspMI | CTAG | 5 cut(s) | 662, 756, 1421, 1755, 1781 |
| StyD4I | CCNGG | 3 cut(s) | 616, 739, 1508 |
| StyI | CCWWGG | 3 cut(s) | 1287, 1584, 1754 |
| TaaI | ACNGT | 8 cut(s) | 1039, 1073, 1132, 1240, 1300, 1399, 1538, 1880 |
| TaiI | ACGT | 4 cut(s) | 247, 476, 898, 1167 |
| TatI | WGTACW | 2 cut(s) | 881, 982 |
| Tru1I | TTAA | 7 cut(s) | 38, 402, 524, 948, 1068, 1445, 1515 |
| Tru9I | TTAA | 7 cut(s) | 38, 402, 524, 948, 1068, 1445, 1515 |
| TscAI | CASTG | 2 cut(s) | 291, 922 |
| TseFI | GTSAC | 1 cut(s) | 368 |
| TseI | GCWGC | 2 cut(s) | 568, 875 |
| Tsp45I | GTSAC | 1 cut(s) | 368 |
| TspDTI | ATGAA | 6 cut(s) | 69, 948, 1100, 1213, 1269, 1902 |
| TspGWI | ACGGA | 4 cut(s) | 177, 1635, 1855, 1874 |
| TspRI | CASTG | 2 cut(s) | 291, 922 |
| VpaK11BI | GGWCC | 3 cut(s) | 223, 611, 1055 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 738 |
| XapI | RAATTY | 3 cut(s) | 136, 413, 940 |
| XmaJI | CCTAGG | 1 cut(s) | 1754 |
| XmiI | GTMKAC | 1 cut(s) | 1540 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1311 |
| XspI | CTAG | 5 cut(s) | 662, 756, 1421, 1755, 1781 |
| ZrmI | AGTACT | 1 cut(s) | 883 |