AAA domain (dynein-related subfamily)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73170 AT1G73170 AT1G73170 AT1G73170 |
| fragaria_vesca | FvH4_3g18730 FvH4_3g18730 FvH4_3g18730 |
| malus_domestica | MD11G1259100.v1.1 |
| prunus_persica | Prupe.4G171000_v2.0.a1 Prupe.4G171000_v2.0.a1 Prupe.4G171000_v2.0.a1 |
| pyrus_communis | pycom11g22860 |
| rosa_chinensis | RchiOBHm_Chr5g0031521 |
| rosa_laevigata | RLG00000033320 |
| rosa_multiflora | Rmu_sc0009888.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00048770 |
| rosa_rugosa | Rorug05G0126900 |
| rosa_samantha | Rh5AG219800 Rh5BG219200 Rh5CG242800 Rh5DG224600 |
| rosa_wichuraiana | Rw5G020050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 452 |
| AccIII | TCCGGA | 1 cut(s) | 141 |
| AciI | CCGC | 2 cut(s) | 180, 429 |
| AclWI | GGATC | 2 cut(s) | 124, 430 |
| AcsI | RAATTY | 1 cut(s) | 26 |
| AfaI | GTAC | 2 cut(s) | 20, 263 |
| AgsI | TTSAA | 3 cut(s) | 109, 383, 475 |
| AluBI | AGCT | 3 cut(s) | 251, 290, 295 |
| AluI | AGCT | 3 cut(s) | 251, 290, 295 |
| Alw26I | GTCTC | 1 cut(s) | 177 |
| AlwI | GGATC | 2 cut(s) | 124, 430 |
| Aor13HI | TCCGGA | 1 cut(s) | 141 |
| ApoI | RAATTY | 1 cut(s) | 26 |
| AseI | ATTAAT | 1 cut(s) | 300 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 466 |
| AsuII | TTCGAA | 1 cut(s) | 254 |
| BccI | CCATC | 1 cut(s) | 241 |
| BclI | TGATCA | 1 cut(s) | 393 |
| BcoDI | GTCTC | 1 cut(s) | 177 |
| BfaI | CTAG | 1 cut(s) | 149 |
| BisI | GCNGC | 1 cut(s) | 430 |
| BlpI | GCTNAGC | 1 cut(s) | 291 |
| BlsI | GCNGC | 1 cut(s) | 431 |
| BmsI | GCATC | 1 cut(s) | 505 |
| BpmI | CTGGAG | 1 cut(s) | 231 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 291 |
| Bpu14I | TTCGAA | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 1 cut(s) | 13 |
| BsaWI | WCCGGW | 1 cut(s) | 141 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 174, 204 |
| BseAI | TCCGGA | 1 cut(s) | 141 |
| BseDI | CCNNGG | 1 cut(s) | 13 |
| BseGI | GGATG | 3 cut(s) | 322, 328, 520 |
| BseMII | CTCAG | 3 cut(s) | 251, 279, 282 |
| BseYI | CCCAGC | 1 cut(s) | 112 |
| BsiSI | CCGG | 3 cut(s) | 125, 133, 142 |
| BsmAI | GTCTC | 1 cut(s) | 177 |
| BsmBI | CGTCTC | 1 cut(s) | 177 |
| Bsp119I | TTCGAA | 1 cut(s) | 254 |
| Bsp13I | TCCGGA | 1 cut(s) | 141 |
| Bsp143I | GATC | 3 cut(s) | 129, 393, 435 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 291 |
| Bsp19I | CCATGG | 1 cut(s) | 13 |
| BspACI | CCGC | 2 cut(s) | 180, 429 |
| BspCNI | CTCAG | 3 cut(s) | 250, 278, 283 |
| BspEI | TCCGGA | 1 cut(s) | 141 |
| BspPI | GGATC | 2 cut(s) | 124, 430 |
| BspT104I | TTCGAA | 1 cut(s) | 254 |
| BssECI | CCNNGG | 1 cut(s) | 13 |
| BssMI | GATC | 3 cut(s) | 129, 393, 435 |
| BssT1I | CCWWGG | 1 cut(s) | 13 |
| Bst6I | CTCTTC | 5 cut(s) | 64, 71, 79, 99, 399 |
| BstBI | TTCGAA | 1 cut(s) | 254 |
| BstDEI | CTNAG | 4 cut(s) | 237, 265, 291, 440 |
| BstDSI | CCRYGG | 1 cut(s) | 13 |
| BstF5I | GGATG | 3 cut(s) | 322, 328, 520 |
| BstKTI | GATC | 3 cut(s) | 132, 396, 438 |
| BstMAI | GTCTC | 1 cut(s) | 177 |
| BstMBI | GATC | 3 cut(s) | 129, 393, 435 |
| BstX2I | RGATCY | 2 cut(s) | 129, 435 |
| BstYI | RGATCY | 2 cut(s) | 129, 435 |
| BtgI | CCRYGG | 1 cut(s) | 13 |
| BtsCI | GGATG | 3 cut(s) | 322, 328, 520 |
| Csp6I | GTAC | 2 cut(s) | 19, 262 |
| CviAII | CATG | 1 cut(s) | 14 |
| CviJI | RGCY | 4 cut(s) | 136, 251, 290, 295 |
| CviKI_1 | RGCY | 4 cut(s) | 136, 251, 290, 295 |
| CviQI | GTAC | 2 cut(s) | 19, 262 |
| DdeI | CTNAG | 4 cut(s) | 237, 265, 291, 440 |
| DpnI | GATC | 3 cut(s) | 131, 395, 437 |
| DpnII | GATC | 3 cut(s) | 129, 393, 435 |
| Eam1104I | CTCTTC | 5 cut(s) | 64, 71, 79, 99, 399 |
| EarI | CTCTTC | 5 cut(s) | 64, 71, 79, 99, 399 |
| EciI | GGCGGA | 1 cut(s) | 195 |
| Eco130I | CCWWGG | 1 cut(s) | 13 |
| Eco32I | GATATC | 1 cut(s) | 217 |
| EcoRV | GATATC | 1 cut(s) | 217 |
| EcoT14I | CCWWGG | 1 cut(s) | 13 |
| ErhI | CCWWGG | 1 cut(s) | 13 |
| Esp3I | CGTCTC | 1 cut(s) | 177 |
| FaeI | CATG | 1 cut(s) | 17 |
| FaiI | YATR | 7 cut(s) | 15, 23, 271, 280, 287, 370, 491 |
| FatI | CATG | 1 cut(s) | 13 |
| FbaI | TGATCA | 1 cut(s) | 393 |
| FblI | GTMKAC | 1 cut(s) | 452 |
| Fnu4HI | GCNGC | 1 cut(s) | 430 |
| FokI | GGATG | 2 cut(s) | 329, 335 |
| Fsp4HI | GCNGC | 1 cut(s) | 430 |
| FspBI | CTAG | 1 cut(s) | 149 |
| GluI | GCNGC | 1 cut(s) | 430 |
| GsaI | CCCAGC | 1 cut(s) | 116 |
| GsuI | CTGGAG | 1 cut(s) | 231 |
| HapII | CCGG | 3 cut(s) | 125, 133, 142 |
| Hin1II | CATG | 1 cut(s) | 17 |
| HinfI | GANTC | 3 cut(s) | 71, 91, 145 |
| HpaII | CCGG | 3 cut(s) | 125, 133, 142 |
| Hpy166II | GTNNAC | 1 cut(s) | 453 |
| Hpy188I | TCNGA | 2 cut(s) | 90, 240 |
| Hpy188III | TCNNGA | 1 cut(s) | 142 |
| Hpy8I | GTNNAC | 1 cut(s) | 453 |
| HpyAV | CCTTC | 1 cut(s) | 352 |
| HpyCH4V | TGCA | 1 cut(s) | 446 |
| HpyF3I | CTNAG | 4 cut(s) | 237, 265, 291, 440 |
| Hsp92II | CATG | 1 cut(s) | 17 |
| Kpn2I | TCCGGA | 1 cut(s) | 141 |
| Ksp22I | TGATCA | 1 cut(s) | 393 |
| Kzo9I | GATC | 3 cut(s) | 129, 393, 435 |
| LpnPI | CCDG | 6 cut(s) | 126, 138, 146, 155, 194, 261 |
| LweI | GCATC | 1 cut(s) | 505 |
| MaeI | CTAG | 1 cut(s) | 149 |
| MalI | GATC | 3 cut(s) | 131, 395, 437 |
| MboI | GATC | 3 cut(s) | 129, 393, 435 |
| MboII | GAAGA | 7 cut(s) | 51, 58, 66, 86, 197, 286, 416 |
| MflI | RGATCY | 2 cut(s) | 129, 435 |
| MluCI | AATT | 5 cut(s) | 26, 297, 376, 414, 466 |
| MlyI | GAGTC | 2 cut(s) | 65, 85 |
| MmeI | TCCRAC | 1 cut(s) | 113 |
| MnlI | CCTC | 5 cut(s) | 151, 181, 214, 313, 348 |
| MroI | TCCGGA | 1 cut(s) | 141 |
| MroXI | GAANNNNTTC | 1 cut(s) | 466 |
| MseI | TTAA | 2 cut(s) | 300, 520 |
| MspI | CCGG | 3 cut(s) | 125, 133, 142 |
| NcoI | CCATGG | 1 cut(s) | 13 |
| NdeII | GATC | 3 cut(s) | 129, 393, 435 |
| NlaIII | CATG | 1 cut(s) | 17 |
| NspV | TTCGAA | 1 cut(s) | 254 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 183 |
| PdmI | GAANNNNTTC | 1 cut(s) | 466 |
| PfeI | GAWTC | 1 cut(s) | 145 |
| PkrI | GCNGC | 1 cut(s) | 431 |
| PleI | GAGTC | 2 cut(s) | 65, 85 |
| PpsI | GAGTC | 2 cut(s) | 65, 85 |
| PshBI | ATTAAT | 1 cut(s) | 300 |
| PspFI | CCCAGC | 1 cut(s) | 112 |
| PsuI | RGATCY | 2 cut(s) | 129, 435 |
| RsaI | GTAC | 2 cut(s) | 20, 263 |
| RsaNI | GTAC | 2 cut(s) | 19, 262 |
| SaqAI | TTAA | 2 cut(s) | 300, 520 |
| SatI | GCNGC | 1 cut(s) | 430 |
| Sau3AI | GATC | 3 cut(s) | 129, 393, 435 |
| SchI | GAGTC | 2 cut(s) | 65, 85 |
| SetI | ASST | 4 cut(s) | 192, 253, 292, 297 |
| SfaNI | GCATC | 1 cut(s) | 505 |
| SfuI | TTCGAA | 1 cut(s) | 254 |
| Sse9I | AATT | 5 cut(s) | 26, 297, 376, 414, 466 |
| SsiI | CCGC | 2 cut(s) | 180, 429 |
| SspMI | CTAG | 1 cut(s) | 149 |
| StyI | CCWWGG | 1 cut(s) | 13 |
| TaqI | TCGA | 3 cut(s) | 69, 219, 254 |
| TasI | AATT | 5 cut(s) | 26, 297, 376, 414, 466 |
| TauI | GCSGC | 1 cut(s) | 432 |
| TfiI | GAWTC | 1 cut(s) | 145 |
| Tru1I | TTAA | 2 cut(s) | 300, 520 |
| Tru9I | TTAA | 2 cut(s) | 300, 520 |
| TspDTI | ATGAA | 2 cut(s) | 163, 321 |
| VspI | ATTAAT | 1 cut(s) | 300 |
| XapI | RAATTY | 1 cut(s) | 26 |
| XmiI | GTMKAC | 1 cut(s) | 452 |
| XmnI | GAANNNNTTC | 1 cut(s) | 466 |
| XspI | CTAG | 1 cut(s) | 149 |