Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009888.1

Orthogroup ID

OG0009167

Physical Location & Seq

Genomic Coordinates Reverse (-)

44366 .. 48125

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009888.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atgattgtcgacacctccaatgagattggtggggatggtgatataccccatgcaggaataggcaatgctcggcgaatgcaagtccctatctctgatatgcaacataaggtcttgatagaagctgttgaaaatcatatgccacaagtgattgtaattgatgaaattggcactaaacttgaagcaatggctgcaagcacaattgcacaacgtggaatccagctagtggccactgctcatggagtaaccatcgagaatctgataatgaatccttcattggaaatgcttgttggaggtgtacagagtgtgacactaggagatgaagaggccagccggaggggggttcaaaagacagtgctagaaaggaaaggacctgcaacatttagttgtggggttgagataatttcaaagactgagttaagagttcatcctagcttagaaacaacagtggatgctatcctctcaggtcgtttcccaaattttgaagttcgcaaaattaactctcagggatcagaagaaactactgtaagagaaaatttgctctccagttcctgggatgaacaagatgataatgttacagaagatgccaaaaatatgagtgagaagggatatggttataacgatctcactcctgaggtttctccatatatgcaagtggattccggggatgaagggatggaacttcgattgtttgtttatgggatcctagaagccactgtgatgcaagggataaaacagttaaagatggatgaggctgctatccagttaacagatgatatcagcaaggcagatgcactattcgccatgcaatccaagctcaagaaaaatcccgggattcaggctgctgctagatctcatggtacacccatttatgtgactaagacaagcgcgttggtggaaataaaaaaggcacttcggttattattgaatgattattacggtggtttgaatgattatggaccagtagacaatatgcaatcgtctgagaaggttgatgctcttgaggaggcaagaatagccattgagcaggttgtaattccaaaaggggaacctgtagaacttcttccgaggccaccccacattatgtctattcagattgaccttattcgcaagtacaaattagaagcagaaagaatcgatcaggaggcagatgtgcgtctccgtatccttccatttcataccacaaggatggaagagaatcatactagcaaaagaaccgataatgatgatgatgatgaatttgatgaagttctgggcaccaatggtaacacgaatggttcacttctcacagtggaaaggttaccactgcttccagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

438

Amino Acids

48.34

Weight (kDa)

4.74

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73170 AT1G73170 AT1G73170 AT1G73170
fragaria_vesca	FvH4_3g18730 FvH4_3g18730 FvH4_3g18730
malus_domestica	MD11G1259100.v1.1
prunus_persica	Prupe.4G171000_v2.0.a1 Prupe.4G171000_v2.0.a1 Prupe.4G171000_v2.0.a1
pyrus_communis	pycom11g22860
rosa_chinensis	RchiOBHm_Chr5g0031521
rosa_laevigata	RLG00000033320
rosa_multiflora	Rmu_sc0009888.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048770
rosa_rugosa	Rorug05G0126900
rosa_samantha	Rh5AG219800 Rh5BG219200 Rh5CG242800 Rh5DG224600
rosa_wichuraiana	Rw5G020050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
Acc36I	ACCTGC	2 cut(s)	379, 1015
AccB1I	GGYRCC	1 cut(s)	1253
AccB7I	CCANNNNNTGG	2 cut(s)	223, 549
AccI	GTMKAC	2 cut(s)	9, 963
AccII	CGCG	1 cut(s)	887
AclWI	GGATC	3 cut(s)	514, 694, 707
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	475, 532, 1235
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	3 cut(s)	297, 859, 1112
AfiI	CCNNNNNNNGG	5 cut(s)	53, 223, 333, 337, 549
AgsI	TTSAA	7 cut(s)	128, 179, 344, 405, 482, 925, 946
AjnI	CCWGG	1 cut(s)	548
AjuI	GAANNNNNNNTTGG	4 cut(s)	257, 270, 289, 302
AluBI	AGCT	4 cut(s)	122, 220, 432, 814
AluI	AGCT	4 cut(s)	122, 220, 432, 814
Alw26I	GTCTC	1 cut(s)	1160
AlwI	GGATC	3 cut(s)	514, 694, 707
AlwNI	CAGNNNCTG	1 cut(s)	549
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	3 cut(s)	225, 324, 1067
ApeKI	GCWGC	4 cut(s)	188, 752, 839, 842
ApoI	RAATTY	3 cut(s)	475, 532, 1235
Asp700I	GAANNNNTTC	1 cut(s)	1059
AspLEI	GCGC	1 cut(s)	887
AspS9I	GGNCC	2 cut(s)	368, 956
AsuC2I	CCSGG	3 cut(s)	661, 828, 829
AsuHPI	GGTGA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	368, 956
AxyI	CCTNAGG	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	1256
BalI	TGGCCA	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	699
BanI	GGYRCC	1 cut(s)	1253
BarI	GAAGNNNNNNTAC	2 cut(s)	1044, 1076
BbvI	GCAGC	4 cut(s)	175, 739, 826, 829
BccI	CCATC	5 cut(s)	29, 254, 667, 736, 1180
BciT130I	CCWGG	1 cut(s)	550
BciVI	GTATCC	1 cut(s)	1172
BcnI	CCSGG	3 cut(s)	661, 828, 829
BcoDI	GTCTC	1 cut(s)	1160
BfaI	CTAG	7 cut(s)	221, 311, 356, 429, 704, 846, 1203
BfmI	CTRYAG	1 cut(s)	1050
BfuAI	ACCTGC	2 cut(s)	379, 1015
BfuI	GTATCC	1 cut(s)	1172
BglII	AGATCT	1 cut(s)	848
BisI	GCNGC	4 cut(s)	189, 753, 840, 843
BlsI	GCNGC	4 cut(s)	190, 754, 841, 844
Bme1390I	CCNGG	4 cut(s)	550, 661, 828, 829
Bme18I	GGWCC	2 cut(s)	368, 956
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	2 cut(s)	368, 956
BmiI	GGNNCC	3 cut(s)	701, 1047, 1255
BmrFI	CCNGG	4 cut(s)	550, 661, 828, 829
BmsI	GCATC	5 cut(s)	439, 571, 708, 778, 982
BpmI	CTGGAG	1 cut(s)	526
BpuEI	CTTGAG	2 cut(s)	800, 1019
BpuMI	CCSGG	3 cut(s)	661, 828, 829
Bsa29I	ATCGAT	1 cut(s)	1134
BsaJI	CCNNGG	4 cut(s)	549, 660, 827, 1064
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 223, 333, 337, 549
Bse1I	ACTGG	3 cut(s)	543, 760, 959
Bse21I	CCTNAGG	1 cut(s)	630
Bse3DI	GCAATG	2 cut(s)	70, 189
BseBI	CCWGG	1 cut(s)	550
BseCI	ATCGAT	1 cut(s)	1134
BseDI	CCNNGG	4 cut(s)	549, 660, 827, 1064
BseGI	GGATG	8 cut(s)	40, 424, 454, 559, 670, 678, 751, 1191
BseLI	CCNNNNNNNGG	5 cut(s)	53, 223, 333, 337, 549
BseMI	GCAATG	2 cut(s)	70, 189
BseMII	CTCAG	5 cut(s)	402, 474, 515, 621, 972
BseNI	ACTGG	3 cut(s)	543, 760, 959
BseRI	GAGGAG	1 cut(s)	1016
BseSI	GKGCMC	1 cut(s)	1256
BseXI	GCAGC	4 cut(s)	175, 739, 826, 829
Bsh1236I	CGCG	1 cut(s)	887
BshFI	GGCC	3 cut(s)	227, 326, 1069
BshNI	GGYRCC	1 cut(s)	1253
BshVI	ATCGAT	1 cut(s)	1134
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	3 cut(s)	331, 660, 828
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	5 cut(s)	53, 223, 333, 337, 549
BsmAI	GTCTC	1 cut(s)	1160
BsmBI	CGTCTC	1 cut(s)	1160
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	227, 326, 1069
BsoBI	CYCGRG	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	1256
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	506, 619, 699, 848, 1135
BspANI	GGCC	3 cut(s)	227, 326, 1069
BspCNI	CTCAG	5 cut(s)	403, 473, 514, 622, 973
BspDI	ATCGAT	1 cut(s)	1134
BspFNI	CGCG	1 cut(s)	887
BspLI	GGNNCC	3 cut(s)	701, 1047, 1255
BspMI	ACCTGC	2 cut(s)	379, 1015
BspPI	GGATC	3 cut(s)	514, 694, 707
BspT107I	GGYRCC	1 cut(s)	1253
BsrDI	GCAATG	2 cut(s)	70, 189
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	543, 760, 959
BssECI	CCNNGG	4 cut(s)	549, 660, 827, 1064
BssMI	GATC	5 cut(s)	506, 619, 699, 848, 1135
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	7 cut(s)	352, 445, 523, 715, 735, 938, 1288
Bst6I	CTCTTC	2 cut(s)	315, 1185
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	193, 328
BstDEI	CTNAG	7 cut(s)	411, 433, 460, 501, 630, 876, 981
BstEII	GGTNACC	1 cut(s)	1296
BstF5I	GGATG	8 cut(s)	40, 424, 454, 559, 670, 678, 751, 1191
BstFNI	CGCG	1 cut(s)	887
BstHHI	GCGC	1 cut(s)	887
BstKTI	GATC	5 cut(s)	509, 622, 702, 851, 1138
BstMAI	GTCTC	1 cut(s)	1160
BstMBI	GATC	5 cut(s)	506, 619, 699, 848, 1135
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 797, 811, 1013
BstNI	CCWGG	1 cut(s)	550
BstPI	GGTNACC	1 cut(s)	1296
BstSCI	CCNGG	4 cut(s)	548, 659, 826, 827
BstSFI	CTRYAG	1 cut(s)	1050
BstSLI	GKGCMC	1 cut(s)	1256
BstUI	CGCG	1 cut(s)	887
BstV1I	GCAGC	4 cut(s)	175, 739, 826, 829
BstX2I	RGATCY	2 cut(s)	699, 848
BstXI	CCANNNNNNTGG	1 cut(s)	1186
BstYI	RGATCY	2 cut(s)	699, 848
Bsu15I	ATCGAT	1 cut(s)	1134
Bsu36I	CCTNAGG	1 cut(s)	630
BsuI	GTATCC	1 cut(s)	1172
BsuRI	GGCC	3 cut(s)	227, 326, 1069
BsuTUI	ATCGAT	1 cut(s)	1134
BtsCI	GGATG	8 cut(s)	40, 424, 454, 559, 670, 678, 751, 1191
BtsI	GCAGTG	2 cut(s)	228, 1301
BtsIMutI	CAGTG	6 cut(s)	228, 357, 450, 711, 1293, 1301
BveI	ACCTGC	2 cut(s)	379, 1015
Cac8I	GCNNGC	2 cut(s)	193, 328
CaiI	CAGNNNCTG	1 cut(s)	549
CfoI	GCGC	1 cut(s)	887
Cfr13I	GGNCC	2 cut(s)	368, 956
Cfr9I	CCCGGG	1 cut(s)	827
ClaI	ATCGAT	1 cut(s)	1134
CseI	GACGC	1 cut(s)	1142
Csp6I	GTAC	3 cut(s)	296, 858, 1111
CviAII	CATG	4 cut(s)	50, 236, 802, 854
CviQI	GTAC	3 cut(s)	296, 858, 1111
DdeI	CTNAG	7 cut(s)	411, 433, 460, 501, 630, 876, 981
DpnI	GATC	5 cut(s)	508, 621, 701, 850, 1137
DpnII	GATC	5 cut(s)	506, 619, 699, 848, 1135
DraIII	CACNNNGTG	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	315, 1185
EarI	CTCTTC	2 cut(s)	315, 1185
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	2 cut(s)	368, 956
Eco81I	CCTNAGG	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	827
Eco91I	GGTNACC	1 cut(s)	1296
EcoO109I	RGGNCCY	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	1296
EcoRII	CCWGG	1 cut(s)	548
EcoRV	GATATC	1 cut(s)	775
Esp3I	CGTCTC	1 cut(s)	1160
FaeI	CATG	4 cut(s)	53, 239, 805, 857
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	4 cut(s)	49, 235, 801, 853
FauNDI	CATATG	1 cut(s)	135
FblI	GTMKAC	2 cut(s)	9, 963
Fnu4HI	GCNGC	4 cut(s)	189, 753, 840, 843
FokI	GGATG	8 cut(s)	47, 411, 461, 566, 677, 685, 758, 1198
Fsp4HI	GCNGC	4 cut(s)	189, 753, 840, 843
FspBI	CTAG	7 cut(s)	221, 311, 356, 429, 704, 846, 1203
GlaI	GCGC	1 cut(s)	886
GluI	GCNGC	4 cut(s)	189, 753, 840, 843
GsuI	CTGGAG	1 cut(s)	526
HaeIII	GGCC	3 cut(s)	227, 326, 1069
HapII	CCGG	3 cut(s)	331, 660, 828
HgaI	GACGC	1 cut(s)	1142
HhaI	GCGC	1 cut(s)	887
Hin1II	CATG	4 cut(s)	53, 239, 805, 857
Hin6I	GCGC	1 cut(s)	885
HinP1I	GCGC	1 cut(s)	885
HincII	GTYRAC	2 cut(s)	10, 765
HindII	GTYRAC	2 cut(s)	10, 765
HinfI	GANTC	7 cut(s)	213, 253, 265, 656, 832, 1131, 1195
HpaI	GTTAAC	1 cut(s)	765
HpaII	CCGG	3 cut(s)	331, 660, 828
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	6 cut(s)	10, 296, 765, 860, 964, 1277
Hpy188I	TCNGA	6 cut(s)	94, 258, 511, 982, 1065, 1092
Hpy188III	TCNNGA	7 cut(s)	112, 250, 629, 817, 998, 1139, 1310
Hpy8I	GTNNAC	6 cut(s)	10, 296, 765, 860, 964, 1277
HpyAV	CCTTC	5 cut(s)	279, 595, 662, 979, 1175
HpyCH4III	ACNGT	7 cut(s)	352, 445, 523, 715, 735, 938, 1288
HpyCH4IV	ACGT	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 797, 811, 1013
HpyF3I	CTNAG	7 cut(s)	411, 433, 460, 501, 630, 876, 981
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	4 cut(s)	53, 239, 805, 857
HspAI	GCGC	1 cut(s)	885
KspAI	GTTAAC	1 cut(s)	765
Kzo9I	GATC	5 cut(s)	506, 619, 699, 848, 1135
Lsp1109I	GCAGC	4 cut(s)	175, 739, 826, 829
LweI	GCATC	5 cut(s)	439, 571, 708, 778, 982
MaeI	CTAG	7 cut(s)	221, 311, 356, 429, 704, 846, 1203
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	6 cut(s)	241, 304, 571, 871, 1262, 1296
MalI	GATC	5 cut(s)	508, 621, 701, 850, 1137
MboI	GATC	5 cut(s)	506, 619, 699, 848, 1135
MboII	GAAGA	5 cut(s)	332, 524, 590, 1052, 1202
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	2 cut(s)	699, 848
MhlI	GDGCHC	1 cut(s)	1256
MlsI	TGGCCA	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	268
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	1059
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	4 cut(s)	416, 495, 737, 764
MslI	CAYNNNNRTG	3 cut(s)	716, 869, 1184
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	3 cut(s)	331, 660, 828
MspR9I	CCNGG	4 cut(s)	550, 661, 828, 829
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	550
MvnI	CGCG	1 cut(s)	887
MwoI	GCNNNNNNNGC	4 cut(s)	188, 797, 811, 1013
NciI	CCSGG	3 cut(s)	661, 828, 829
NdeI	CATATG	1 cut(s)	135
NdeII	GATC	5 cut(s)	506, 619, 699, 848, 1135
NlaIII	CATG	4 cut(s)	53, 239, 805, 857
NlaIV	GGNNCC	3 cut(s)	701, 1047, 1255
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	304, 871
PctI	GAATGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	1059
PfeI	GAWTC	7 cut(s)	213, 253, 265, 656, 832, 1131, 1195
PflMI	CCANNNNNTGG	2 cut(s)	223, 549
PkrI	GCNGC	4 cut(s)	190, 754, 841, 844
PpuMI	RGGWCCY	1 cut(s)	368
PsiI	TTATAA	1 cut(s)	615
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	548
PspEI	GGTNACC	1 cut(s)	1296
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	3 cut(s)	701, 1047, 1255
PspPI	GGNCC	2 cut(s)	368, 956
PspPPI	RGGWCCY	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	549
PsuI	RGATCY	2 cut(s)	699, 848
RsaI	GTAC	3 cut(s)	297, 859, 1112
RsaNI	GTAC	3 cut(s)	296, 858, 1111
RseI	CAYNNNNRTG	3 cut(s)	716, 869, 1184
SalI	GTCGAC	1 cut(s)	8
SaqAI	TTAA	4 cut(s)	416, 495, 737, 764
SatI	GCNGC	4 cut(s)	189, 753, 840, 843
Sau3AI	GATC	5 cut(s)	506, 619, 699, 848, 1135
Sau96I	GGNCC	2 cut(s)	368, 956
ScrFI	CCNGG	4 cut(s)	550, 661, 828, 829
SduI	GDGCHC	1 cut(s)	1256
SfaNI	GCATC	5 cut(s)	439, 571, 708, 778, 982
SfcI	CTRYAG	1 cut(s)	1050
SinI	GGWCC	2 cut(s)	368, 956
SmaI	CCCGGG	1 cut(s)	829
SmiMI	CAYNNNNRTG	3 cut(s)	716, 869, 1184
SmlI	CTYRAG	2 cut(s)	815, 998
SmoI	CTYRAG	2 cut(s)	815, 998
SspMI	CTAG	7 cut(s)	221, 311, 356, 429, 704, 846, 1203
StyD4I	CCNGG	4 cut(s)	548, 659, 826, 827
TaaI	ACNGT	7 cut(s)	352, 445, 523, 715, 735, 938, 1288
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	4 cut(s)	9, 249, 682, 1134
TatI	WGTACW	2 cut(s)	295, 1110
TfiI	GAWTC	7 cut(s)	213, 253, 265, 656, 832, 1131, 1195
Tru1I	TTAA	4 cut(s)	416, 495, 737, 764
Tru9I	TTAA	4 cut(s)	416, 495, 737, 764
TscAI	CASTG	6 cut(s)	235, 357, 450, 718, 1293, 1308
TseFI	GTSAC	2 cut(s)	304, 871
TseI	GCWGC	4 cut(s)	188, 752, 839, 842
Tsp45I	GTSAC	2 cut(s)	304, 871
TspGWI	ACGGA	1 cut(s)	1148
TspMI	CCCGGG	1 cut(s)	827
TspRI	CASTG	6 cut(s)	235, 357, 450, 718, 1293, 1308
Van91I	CCANNNNNTGG	2 cut(s)	223, 549
VpaK11BI	GGWCC	2 cut(s)	368, 956
XapI	RAATTY	3 cut(s)	475, 532, 1235
XmaI	CCCGGG	1 cut(s)	827
XmiI	GTMKAC	2 cut(s)	9, 963
XmnI	GAANNNNTTC	1 cut(s)	1059
XspI	CTAG	7 cut(s)	221, 311, 356, 429, 704, 846, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.