AT1G74710

isochorismate synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
28070295 .. 28074177
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74710.1

Sequence Viewer

Length: 1710 bp
ATGGCTTCACTTCAATTTTCTTCTCAGTTTCTGGGCTCAAACACTAAAACACACAGCTCTATCATTTCCATCTCTCGTAGTTACTCTCCAACTCCATTCACTAGATTCTCCCGCAAGAAGTATGAGTCATGTTCGATGTCTATGAATGGTTGTGATGGAGATTTCAAGACGCCACTTGGTACAGTGGAGACAAGGACTATGACTGCTGTTTTATCTCCGGCAGCCGCCACTGAAAGGCTAATCTCCGCCGTCTCTGAACTCAAATCTCAACCTCCGTCGTTTTCCTCCGGCGTCGTTCGGTTACAGGTTCCAATTGACCAGCAAATCGGAGCAATTGATTGGCTTCAAGCCCAGAATGAGATTCAGCCTCGCTGTTTCTTCTCTCGTCGCAGTGACGTTGGTCGTCCCGATCTTCTTCTCGATCTAGCTAACGAGAACGGAAACGGAAACGGAAACGGAACAGTGTCATCTGATCGTAATCTGGTTAGCGTTGCTGGTATCGGCTCTGCAGTTTTCTTCCGTGACCTTGATCCTTTCTCTCATGACGATTGGAGATCCATCAGAAGGTTTTTGTCTTCAACGTCACCTCTGATTCGTGCCTATGGTGGTATGCGTTTTGATCCTAATGGCAAGATCGCTGTTGAATGGGAACCTTTTGGTGCATTTTACTTTTCAGTCCCTCAGGTTGAGTTTAATGAGTTTGGTGGAAGTTCAATGTTGGCTGCAACTATTGCTTGGGATGATGAACTCTCTTGGACTCTGGAAAATGCTATTGAAGCACTCCAGGAGACTATGCTTCAAGTTTCTTCTGTTGTAATGAAGTTGAGAAACAGATCTTTAGGAGTATCTGTTTTAAGCAAGAATCATGTTCCTACCAAAGGAGCTTATTTCCCTGCTGTAGAGAAGGCTTTAGAGATGATTAACCAGAAAAGTTCACCCCTTAACAAGGTTGTTCTTGCTCGTAACAGCAGGATAATTACGGATACCGACATTGATCCCATTGCTTGGCTAGCACAGTTACAGCGTGAAGGGCATGATGCATATCAGTTCTGTCTTCAACCACCTGGTGCACCAGCTTTTATCGGAAACACGCCTGAGAGACTATTCCAAAGGACTCAATTAGGTGTCTGCAGTGAAGCTTTGGCTGCAACTAGGCCTAGAGCTGCTTCTAGTGCTCGTGATATGGAGATAGAGCGTGACTTACTAACCAGTCCGAAAGACGACCTCGAGTTCTCTATCGTACGAGAGAATATAAGAGAAAAGTTAAACGGTATATGTGACAGAGTTGTTGTCAAGCCTCAAAAAACTGTGAGGAAGCTTGCAAGAGTGCAACATCTATATTCTCAATTGGCAGGGAGACTTACGAAGGAAGATGATGAGTATAAAATATTGGCTGCTCTGCATCCAACTCCAGCTGTTTGTGGGCTTCCAGCAGAAGAAGCAAGGCTTTTGATTAAGGAGATAGAATCATTCGATAGAGGAATGTATGCGGGACCTATTGGATTTTTTGGTGGCGAGGAGAGTGAATTTGCAGTCGGGATCAGATCAGCTCTAGTCGAAAAGGGTCTTGGGGCATTGATCTATGCGGGGACAGGGATAGTAGCTGGAAGTGACCCATCTTCAGAGTGGAATGAGCTTGATCTTAAGATATCTCAGTTCACCAAGTCAATTGAATATGAAGCAACAACATCTCTACAGGCGATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

569

Amino Acids

62.57

Weight (kDa)

5.65

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chorismate_bind PF00425 295 - 549 8.8e-64 chorismate binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1005
AciI CCGC 5 cut(s) 112, 225, 246, 1490, 1586
AclWI GGATC 5 cut(s) 524, 549, 614, 989, 1547
AcsI RAATTY 1 cut(s) 1526
AcuI CTGAAG 1 cut(s) 1605
AcyI GRCGYC 2 cut(s) 170, 291
AdeI CACNNNGTG 1 cut(s) 1067
AfaI GTAC 2 cut(s) 181, 1242
AfiI CCNNNNNNNGG 5 cut(s) 234, 564, 878, 946, 1005
AflII CTTAAG 1 cut(s) 1643
AjnI CCWGG 2 cut(s) 783, 1063
AjuI GAANNNNNNNTTGG 2 cut(s) 1551, 1583
Alw21I GWGCWC 2 cut(s) 1072, 1177
Alw26I GTCTC 5 cut(s) 182, 256, 782, 1093, 1351
Alw44I GTGCAC 1 cut(s) 1068
AlwI GGATC 5 cut(s) 524, 549, 614, 989, 1547
AlwNI CAGNNNCTG 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 1226
AoxI GGCC 1 cut(s) 1154
ApaLI GTGCAC 1 cut(s) 1068
ApeKI GCWGC 5 cut(s) 221, 722, 1145, 1163, 1394
ApoI RAATTY 1 cut(s) 1526
AseI ATTAAT 1 cut(s) 1704
AspS9I GGNCC 1 cut(s) 1493
AsuHPI GGTGA 3 cut(s) 576, 927, 1651
AsuNHI GCTAGC 1 cut(s) 1009
AvaI CYCGRG 1 cut(s) 1226
AvaII GGWCC 1 cut(s) 1493
AxyI CCTNAGG 1 cut(s) 681
BaeGI GKGCMC 1 cut(s) 1072
BanII GRGCYC 1 cut(s) 38
BauI CACGAG 1 cut(s) 1176
BbsI GAAGAC 2 cut(s) 567, 1046
Bbv12I GWGCWC 2 cut(s) 1072, 1177
BbvI GCAGC 5 cut(s) 233, 709, 1132, 1150, 1381
BccI CCATC 4 cut(s) 77, 149, 566, 1624
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 2 cut(s) 785, 1065
BciVI GTATCC 1 cut(s) 976
BcoDI GTCTC 5 cut(s) 182, 256, 782, 1093, 1351
BfaI CTAG 7 cut(s) 102, 425, 1010, 1152, 1158, 1170, 1553
BfmI CTRYAG 4 cut(s) 507, 897, 1129, 1694
BfrI CTTAAG 1 cut(s) 1643
BfuI GTATCC 1 cut(s) 976
BglII AGATCT 1 cut(s) 833
BisI GCNGC 6 cut(s) 222, 225, 723, 1146, 1164, 1395
BlsI GCNGC 6 cut(s) 223, 226, 724, 1147, 1165, 1396
Bme1390I CCNGG 2 cut(s) 785, 1065
Bme18I GGWCC 1 cut(s) 1493
BmeT110I CYCGRG 1 cut(s) 1226
BmgT120I GGNCC 1 cut(s) 1493
BmiI GGNNCC 3 cut(s) 309, 651, 1494
BmrFI CCNGG 2 cut(s) 785, 1065
BmsI GCATC 2 cut(s) 1027, 1411
BmtI GCTAGC 1 cut(s) 1013
BoxI GACNNNNGTC 1 cut(s) 399
BpiI GAAGAC 2 cut(s) 567, 1046
BpmI CTGGAG 2 cut(s) 767, 1395
BsaBI GATNNNNATC 2 cut(s) 477, 1041
BsaHI GRCGYC 2 cut(s) 170, 291
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 564, 878, 946, 1005
Bse1I ACTGG 1 cut(s) 1209
Bse21I CCTNAGG 1 cut(s) 681
Bse3DI GCAATG 1 cut(s) 999
Bse8I GATNNNNATC 2 cut(s) 477, 1041
BseBI CCWGG 2 cut(s) 785, 1065
BseGI GGATG 2 cut(s) 745, 1402
BseJI GATNNNNATC 2 cut(s) 477, 1041
BseLI CCNNNNNNNGG 5 cut(s) 234, 564, 878, 946, 1005
BseMI GCAATG 1 cut(s) 999
BseMII CTCAG 4 cut(s) 38, 695, 1086, 1667
BseNI ACTGG 1 cut(s) 1209
BseRI GAGGAG 1 cut(s) 1532
BseSI GKGCMC 1 cut(s) 1072
BseXI GCAGC 5 cut(s) 233, 709, 1132, 1150, 1381
BshFI GGCC 1 cut(s) 1156
BsiHKAI GWGCWC 2 cut(s) 1072, 1177
BsiHKCI CYCGRG 1 cut(s) 1226
BsiSI CCGG 2 cut(s) 218, 288
BsiWI CGTACG 1 cut(s) 1240
BslFI GGGAC 4 cut(s) 390, 662, 1506, 1603
BslI CCNNNNNNNGG 5 cut(s) 234, 564, 878, 946, 1005
BsmAI GTCTC 5 cut(s) 182, 256, 782, 1093, 1351
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 4 cut(s) 390, 662, 1506, 1603
BsnI GGCC 1 cut(s) 1156
BsoBI CYCGRG 1 cut(s) 1226
Bsp1286I GDGCHC 3 cut(s) 38, 1072, 1177
BspACI CCGC 5 cut(s) 112, 225, 246, 1490, 1586
BspANI GGCC 1 cut(s) 1156
BspCNI CTCAG 4 cut(s) 37, 694, 1087, 1666
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 3 cut(s) 309, 651, 1494
BspMAI CTGCAG 2 cut(s) 511, 1133
BspOI GCTAGC 1 cut(s) 1013
BspPI GGATC 5 cut(s) 524, 549, 614, 989, 1547
BspTI CTTAAG 1 cut(s) 1643
BsrDI GCAATG 1 cut(s) 999
BsrI ACTGG 1 cut(s) 1209
BssNI GRCGYC 2 cut(s) 170, 291
BssSI CACGAG 1 cut(s) 1176
Bst2BI CACGAG 1 cut(s) 1176
Bst2UI CCWGG 2 cut(s) 785, 1065
Bst4CI ACNGT 5 cut(s) 184, 463, 1017, 1271, 1309
BstACI GRCGYC 2 cut(s) 170, 291
BstAFI CTTAAG 1 cut(s) 1643
BstAPI GCANNNNNTGC 1 cut(s) 731
BstC8I GCNNGC 2 cut(s) 1011, 1320
BstDEI CTNAG 4 cut(s) 24, 681, 1095, 1653
BstENI CCTNNNNNAGG 2 cut(s) 876, 944
BstF5I GGATG 2 cut(s) 745, 1402
BstMAI GTCTC 5 cut(s) 182, 256, 782, 1093, 1351
BstMWI GCNNNNNNNGC 7 cut(s) 731, 776, 1010, 1030, 1145, 1172, 1439
BstNI CCWGG 2 cut(s) 785, 1065
BstPAI GACNNNNGTC 1 cut(s) 399
BstSCI CCNGG 2 cut(s) 783, 1063
BstSFI CTRYAG 4 cut(s) 507, 897, 1129, 1694
BstSLI GKGCMC 1 cut(s) 1072
BstV1I GCAGC 5 cut(s) 233, 709, 1132, 1150, 1381
BstV2I GAAGAC 2 cut(s) 567, 1046
BstX2I RGATCY 2 cut(s) 554, 833
BstYI RGATCY 2 cut(s) 554, 833
Bsu36I CCTNAGG 1 cut(s) 681
BsuI GTATCC 1 cut(s) 976
BsuRI GGCC 1 cut(s) 1156
BtsCI GGATG 2 cut(s) 745, 1402
BtsI GCAGTG 2 cut(s) 397, 1138
BtsIMutI CAGTG 5 cut(s) 189, 228, 397, 468, 1138
Cac8I GCNNGC 2 cut(s) 1011, 1320
CaiI CAGNNNCTG 1 cut(s) 31
CciI TCATGA 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 1493
CseI GACGC 2 cut(s) 178, 280
CsiI ACCWGGT 1 cut(s) 1063
Csp6I GTAC 2 cut(s) 180, 1241
CviAII CATG 4 cut(s) 129, 542, 866, 1034
CviQI GTAC 2 cut(s) 180, 1241
DdeI CTNAG 4 cut(s) 24, 681, 1095, 1653
DraIII CACNNNGTG 1 cut(s) 1067
EciI GGCGGA 1 cut(s) 235
Eco147I AGGCCT 1 cut(s) 1156
Eco24I GRGCYC 1 cut(s) 38
Eco32I GATATC 1 cut(s) 1650
Eco47I GGWCC 1 cut(s) 1493
Eco57I CTGAAG 1 cut(s) 1605
Eco81I CCTNAGG 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 1226
EcoNI CCTNNNNNAGG 2 cut(s) 876, 944
EcoO109I RGGNCCY 1 cut(s) 1493
EcoRII CCWGG 2 cut(s) 783, 1063
EcoRV GATATC 1 cut(s) 1650
EcoT22I ATGCAT 1 cut(s) 1042
EcoT38I GRGCYC 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 4 cut(s) 132, 545, 869, 1037
FalI AAGNNNNNCTT 2 cut(s) 1431, 1463
FaqI GGGAC 4 cut(s) 390, 662, 1506, 1603
FatI CATG 4 cut(s) 128, 541, 865, 1033
FauI CCCGC 3 cut(s) 119, 1483, 1579
Fnu4HI GCNGC 6 cut(s) 222, 225, 723, 1146, 1164, 1395
FokI GGATG 2 cut(s) 752, 1389
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 6 cut(s) 222, 225, 723, 1146, 1164, 1395
FspBI CTAG 7 cut(s) 102, 425, 1010, 1152, 1158, 1170, 1553
GluI GCNGC 6 cut(s) 222, 225, 723, 1146, 1164, 1395
GsuI CTGGAG 2 cut(s) 767, 1395
HaeIII GGCC 1 cut(s) 1156
HapII CCGG 2 cut(s) 218, 288
HgaI GACGC 2 cut(s) 178, 280
Hin1I GRCGYC 2 cut(s) 170, 291
Hin1II CATG 4 cut(s) 132, 545, 869, 1037
HindIII AAGCTT 2 cut(s) 1137, 1316
HinfI GANTC 8 cut(s) 105, 125, 361, 592, 757, 862, 1114, 1466
HpaII CCGG 2 cut(s) 218, 288
HphI GGTGA 3 cut(s) 576, 927, 1651
Hpy166II GTNNAC 3 cut(s) 935, 1070, 1659
Hpy188I TCNGA 9 cut(s) 256, 329, 472, 563, 591, 1085, 1215, 1544, 1624
Hpy188III TCNNGA 7 cut(s) 166, 407, 419, 542, 761, 1178, 1537
Hpy8I GTNNAC 3 cut(s) 935, 1070, 1659
Hpy99I CGWCG 3 cut(s) 280, 296, 390
HpyAV CCTTC 4 cut(s) 558, 898, 1022, 1360
HpyCH4III ACNGT 5 cut(s) 184, 463, 1017, 1271, 1309
HpyCH4IV ACGT 2 cut(s) 396, 581
HpyF10VI GCNNNNNNNGC 7 cut(s) 731, 776, 1010, 1030, 1145, 1172, 1439
HpyF3I CTNAG 4 cut(s) 24, 681, 1095, 1653
HpySE526I ACGT 2 cut(s) 396, 581
Hsp92I GRCGYC 2 cut(s) 170, 291
Hsp92II CATG 4 cut(s) 132, 545, 869, 1037
LmnI GCTCC 2 cut(s) 329, 881
Lsp1109I GCAGC 5 cut(s) 233, 709, 1132, 1150, 1381
LweI GCATC 2 cut(s) 1027, 1411
MabI ACCWGGT 1 cut(s) 1063
MaeI CTAG 7 cut(s) 102, 425, 1010, 1152, 1158, 1170, 1553
MaeII ACGT 2 cut(s) 396, 581
MfeI CAATTG 4 cut(s) 312, 333, 1346, 1668
MflI RGATCY 2 cut(s) 554, 833
MhlI GDGCHC 3 cut(s) 38, 1072, 1177
MluCI AATT 9 cut(s) 14, 312, 333, 975, 1118, 1346, 1526, 1668, 1705
MlyI GAGTC 3 cut(s) 134, 751, 1108
MmeI TCCRAC 2 cut(s) 113, 1430
Mph1103I ATGCAT 1 cut(s) 1042
MseI TTAA 8 cut(s) 693, 854, 921, 942, 1265, 1455, 1644, 1704
MspA1I CMGCKG 1 cut(s) 1415
MspCI CTTAAG 1 cut(s) 1643
MspI CCGG 2 cut(s) 218, 288
MspR9I CCNGG 2 cut(s) 785, 1065
MunI CAATTG 4 cut(s) 312, 333, 1346, 1668
MvaI CCWGG 2 cut(s) 785, 1065
MwoI GCNNNNNNNGC 7 cut(s) 731, 776, 1010, 1030, 1145, 1172, 1439
NheI GCTAGC 1 cut(s) 1009
NlaIII CATG 4 cut(s) 132, 545, 869, 1037
NlaIV GGNNCC 3 cut(s) 309, 651, 1494
NmuCI GTSAC 6 cut(s) 392, 521, 582, 1196, 1277, 1610
NsiI ATGCAT 1 cut(s) 1042
PaeR7I CTCGAG 1 cut(s) 1226
PagI TCATGA 1 cut(s) 541
PceI AGGCCT 1 cut(s) 1156
PfeI GAWTC 5 cut(s) 105, 361, 592, 862, 1466
Pfl23II CGTACG 1 cut(s) 1240
PflMI CCANNNNNTGG 1 cut(s) 1005
PfoI TCCNGGA 1 cut(s) 783
PkrI GCNGC 6 cut(s) 223, 226, 724, 1147, 1165, 1396
PleI GAGTC 3 cut(s) 133, 751, 1108
PpsI GAGTC 3 cut(s) 133, 751, 1108
PpuMI RGGWCCY 1 cut(s) 1493
PshAI GACNNNNGTC 1 cut(s) 399
PshBI ATTAAT 1 cut(s) 1704
Psp5II RGGWCCY 1 cut(s) 1493
Psp6I CCWGG 2 cut(s) 783, 1063
PspGI CCWGG 2 cut(s) 783, 1063
PspLI CGTACG 1 cut(s) 1240
PspN4I GGNNCC 3 cut(s) 309, 651, 1494
PspPI GGNCC 1 cut(s) 1493
PspPPI RGGWCCY 1 cut(s) 1493
PspXI VCTCGAGB 1 cut(s) 1226
PstI CTGCAG 2 cut(s) 511, 1133
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 2 cut(s) 554, 833
PvuII CAGCTG 1 cut(s) 1415
RsaI GTAC 2 cut(s) 181, 1242
RsaNI GTAC 2 cut(s) 180, 1241
SaqAI TTAA 8 cut(s) 693, 854, 921, 942, 1265, 1455, 1644, 1704
SatI GCNGC 6 cut(s) 222, 225, 723, 1146, 1164, 1395
Sau96I GGNCC 1 cut(s) 1493
SchI GAGTC 3 cut(s) 134, 751, 1108
ScrFI CCNGG 2 cut(s) 785, 1065
SduI GDGCHC 3 cut(s) 38, 1072, 1177
SexAI ACCWGGT 1 cut(s) 1063
SfaNI GCATC 2 cut(s) 1027, 1411
SfcI CTRYAG 4 cut(s) 507, 897, 1129, 1694
Sfr274I CTCGAG 1 cut(s) 1226
SinI GGWCC 1 cut(s) 1493
SlaI CTCGAG 1 cut(s) 1226
SmlI CTYRAG 2 cut(s) 1226, 1643
SmoI CTYRAG 2 cut(s) 1226, 1643
Sse9I AATT 9 cut(s) 14, 312, 333, 975, 1118, 1346, 1526, 1668, 1705
SseBI AGGCCT 1 cut(s) 1156
SsiI CCGC 5 cut(s) 112, 225, 246, 1490, 1586
SspI AATATT 1 cut(s) 1389
SspMI CTAG 7 cut(s) 102, 425, 1010, 1152, 1158, 1170, 1553
StuI AGGCCT 1 cut(s) 1156
StyD4I CCNGG 2 cut(s) 783, 1063
TaaI ACNGT 5 cut(s) 184, 463, 1017, 1271, 1309
TaiI ACGT 2 cut(s) 399, 584
TaqI TCGA 5 cut(s) 134, 420, 1227, 1473, 1557
TasI AATT 9 cut(s) 14, 312, 333, 975, 1118, 1346, 1526, 1668, 1705
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 5 cut(s) 105, 361, 592, 862, 1466
Tru1I TTAA 8 cut(s) 693, 854, 921, 942, 1265, 1455, 1644, 1704
Tru9I TTAA 8 cut(s) 693, 854, 921, 942, 1265, 1455, 1644, 1704
TscAI CASTG 5 cut(s) 189, 235, 397, 468, 1138
TseFI GTSAC 6 cut(s) 392, 521, 582, 1196, 1277, 1610
TseI GCWGC 5 cut(s) 221, 722, 1145, 1163, 1394
Tsp45I GTSAC 6 cut(s) 392, 521, 582, 1196, 1277, 1610
TspDTI ATGAA 4 cut(s) 158, 759, 833, 1692
TspGWI ACGGA 7 cut(s) 264, 453, 459, 465, 471, 509, 995
TspRI CASTG 5 cut(s) 189, 235, 397, 468, 1138
Van91I CCANNNNNTGG 1 cut(s) 1005
Vha464I CTTAAG 1 cut(s) 1643
VneI GTGCAC 1 cut(s) 1068
VpaK11BI GGWCC 1 cut(s) 1493
VspI ATTAAT 1 cut(s) 1704
XagI CCTNNNNNAGG 2 cut(s) 876, 944
XapI RAATTY 1 cut(s) 1526
XcmI CCANNNNNNNNNTGG 1 cut(s) 1623
XhoI CTCGAG 1 cut(s) 1226
XspI CTAG 7 cut(s) 102, 425, 1010, 1152, 1158, 1170, 1553
Zsp2I ATGCAT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.