pycom14g16210

Isochorismate synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
18572050 .. 18575736
3687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g16210.5

Sequence Viewer

Length: 1446 bp
ATGTTTAATGGATCCCGAAGCAGCCGCCAAATGCAGCATCACAGTTTCCAGCAGGCAAACCATTCATTTCTCTCACCATGTAAACCTACTTCATTCCCTTTTTTTTCCATCACATTCATACATTCAATGACGCACTGCCATGTGAGAAAATTAAGACGCATTAGCAGTACGTGGTTTGCTTGGGTGGCATCTCAGCAATGTCCGCTTATTCGCGCTTATGGGGCAATCCGTTTCGATGAAAGAGCCAACATATTCTCCGAATGGGAGGCATTTGGTTACTTTTATTTTATGGTTCCTCAGGTTGAGTTTGATGAGCTTGAAGAAGGTTCAATGCTAGCAACAACCATTGCTTGGGACCGCGCTCTTTCGTGGACTTTGAGAGATGCAATTGATGCACTTAAAGCTACATTGCACCAGATATCTTCGGTTGTTTTAAAGCTTCAAAGACATGTTCCTTGGACACTAATGTTAAGGAACAATAACATCCCGTGCAAGACGTATTGGGATCTTGCTGTTAATAGAGCTTTGCAGAAAATAAGAAGCGACTCAGCACTTTTTAAGGTACTGGCCGCAGATGGTAGTATTGTGGTACTCGCGCGTAGCAGCAGAGTAATAACAGCTACCGATATCGATCCCATAGCATGGTTTTGTCTTCAGCCGCCTAATGCACCGGCATTTTTTGGAAACACGCCAGAGCAACTGTTTCACAGAAAATGGCTTGGCATTACCAGCGAGGCTCTGGCTGGAACCCGAGCCAGAGGTGAATCGATGCCTGAAGATCTTCAAATAAAACTTGAGTTACTTTCCAGGTTTAACTCGACCTTTCGTAATCATTTTGTGATGTTATACTTCATTCCGCTGCTACAAATAGTCTTGCAAGCATCCAACCTCAGCAACGTATGTGACAGTGTCCAAATTGAACCAAAGAAAGCAATCCGTAAATTCCCTCGAGTCCAACTTTTATATGCCAAATTGGCTGGCAGGTTAAGAAGTGAAGATGATGAGTTTGAAATATTGTCTTCTCTTCACCCAAGTCCAGCAGTTTGTGGATTTCCAACAGAGGAGGCACGGGTTTTAATTGCAGAAACAGGTGCATCTTACTACTACTTTGTTTTTGCTGTCTATACGCTCATAATCCTTTGGCTCTATACACTCGATTCATCTAGGCCGGTTGGTTGGTTTGGTGGAGGAGAGAGTGAGTTTGCCGTTGGCATTAGGTCAGCATTAGTCGAAAAGGGTCTTGGCGCGATGATCTATGCTGGAACCGGGGTTGTGGAAGGAAGTAATGTATCGTTAGAATGGGATGAACTCGAACTCAAGATTTCTCAGGTCTGTATGCATTCAAATTTGCATCGCTGTGTATCAATAAGCATTGAGCATGAGACTAGATGCTTCAATAAATTTTTACATGTTTTGATCAATGCTGCAGTTATCCAAGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

482

Amino Acids

54.58

Weight (kDa)

8.02

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 972
AccB7I CCANNNNNTGG 2 cut(s) 351, 642
AccII CGCG 5 cut(s) 213, 360, 596, 598, 1247
AciI CCGC 6 cut(s) 25, 203, 358, 570, 659, 857
AclWI GGATC 4 cut(s) 6, 19, 513, 626
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 3 cut(s) 941, 1345, 1400
AcuI CTGAAG 2 cut(s) 638, 795
AfaI GTAC 3 cut(s) 169, 564, 591
AfiI CCNNNNNNNGG 2 cut(s) 351, 642
AflIII ACRYGT 2 cut(s) 448, 1408
AgsI TTSAA 9 cut(s) 126, 320, 330, 443, 785, 920, 1010, 1344, 1396
AjnI CCWGG 1 cut(s) 806
AjuI GAANNNNNNNTTGG 2 cut(s) 1224, 1256
AluBI AGCT 5 cut(s) 316, 404, 439, 524, 620
AluI AGCT 5 cut(s) 316, 404, 439, 524, 620
Alw26I GTCTC 1 cut(s) 1376
AlwI GGATC 4 cut(s) 6, 19, 513, 626
Ama87I CYCGRG 2 cut(s) 750, 948
AoxI GGCC 2 cut(s) 567, 1166
ApeKI GCWGC 5 cut(s) 21, 34, 603, 859, 1424
ApoI RAATTY 3 cut(s) 941, 1345, 1400
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 4 cut(s) 215, 362, 598, 1247
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 1 cut(s) 1267
AsuHPI GGTGA 3 cut(s) 66, 773, 1019
AsuNHI GCTAGC 1 cut(s) 334
AvaI CYCGRG 2 cut(s) 750, 948
AvaII GGWCC 1 cut(s) 355
AxyI CCTNAGG 1 cut(s) 297
BamHI GGATCC 1 cut(s) 11
BarI GAAGNNNNNNTAC 2 cut(s) 73, 105
BbsI GAAGAC 2 cut(s) 644, 1011
BbvCI CCTCAGC 1 cut(s) 890
BbvI GCAGC 5 cut(s) 33, 46, 615, 846, 1411
BccI CCATC 2 cut(s) 116, 569
BceAI ACGGC 1 cut(s) 1190
BciT130I CCWGG 1 cut(s) 808
BclI TGATCA 1 cut(s) 1416
BcnI CCSGG 1 cut(s) 1267
BcoDI GTCTC 1 cut(s) 1376
BfaI CTAG 3 cut(s) 335, 1164, 1386
BfmI CTRYAG 1 cut(s) 1425
BfuAI ACCTGC 1 cut(s) 972
BglI GCCNNNNNGGC 1 cut(s) 974
BglII AGATCT 1 cut(s) 778
BisI GCNGC 8 cut(s) 22, 25, 35, 570, 604, 659, 860, 1425
BlsI GCNGC 8 cut(s) 23, 26, 36, 571, 605, 660, 861, 1426
Bme1390I CCNGG 2 cut(s) 808, 1267
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 2 cut(s) 750, 948
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 5 cut(s) 13, 294, 356, 748, 1264
BmrFI CCNGG 2 cut(s) 808, 1267
BmsI GCATC 9 cut(s) 46, 197, 373, 382, 759, 890, 1103, 1360, 1379
BmtI GCTAGC 1 cut(s) 338
BpiI GAAGAC 2 cut(s) 644, 1011
Bpu10I CCTNAGC 1 cut(s) 890
BpuEI CTTGAG 2 cut(s) 815, 1301
BpuMI CCSGG 1 cut(s) 1267
Bsa29I ATCGAT 2 cut(s) 630, 767
BsaAI YACGTR 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 630
BsaJI CCNNGG 2 cut(s) 455, 1266
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 642
Bse118I RCCGGY 2 cut(s) 670, 1168
Bse1I ACTGG 1 cut(s) 570
Bse21I CCTNAGG 1 cut(s) 297
Bse3DI GCAATG 3 cut(s) 203, 345, 407
Bse8I GATNNNNATC 1 cut(s) 630
BseBI CCWGG 1 cut(s) 808
BseCI ATCGAT 2 cut(s) 630, 767
BseDI CCNNGG 2 cut(s) 455, 1266
BseGI GGATG 3 cut(s) 483, 881, 1309
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 2 cut(s) 351, 642
BseMI GCAATG 3 cut(s) 203, 345, 407
BseMII CTCAG 5 cut(s) 206, 311, 561, 904, 1340
BseNI ACTGG 1 cut(s) 570
BseRI GAGGAG 2 cut(s) 1076, 1203
BseXI GCAGC 5 cut(s) 33, 46, 615, 846, 1411
Bsh1236I CGCG 5 cut(s) 213, 360, 596, 598, 1247
BshFI GGCC 2 cut(s) 569, 1168
BshVI ATCGAT 2 cut(s) 630, 767
BsiHKCI CYCGRG 2 cut(s) 750, 948
BsiSI CCGG 3 cut(s) 671, 1169, 1266
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 351, 642
BsmAI GTCTC 1 cut(s) 1376
BsmFI GGGAC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 1339
BsnI GGCC 2 cut(s) 569, 1168
BsoBI CYCGRG 2 cut(s) 750, 948
Bsp143I GATC 6 cut(s) 11, 505, 631, 778, 1251, 1416
BspACI CCGC 6 cut(s) 25, 203, 358, 570, 659, 857
BspANI GGCC 2 cut(s) 569, 1168
BspCNI CTCAG 5 cut(s) 205, 310, 560, 903, 1339
BspDI ATCGAT 2 cut(s) 630, 767
BspFNI CGCG 5 cut(s) 213, 360, 596, 598, 1247
BspLI GGNNCC 5 cut(s) 13, 294, 356, 748, 1264
BspMAI CTGCAG 1 cut(s) 1429
BspMI ACCTGC 1 cut(s) 972
BspOI GCTAGC 1 cut(s) 338
BspPI GGATC 4 cut(s) 6, 19, 513, 626
BsrDI GCAATG 3 cut(s) 203, 345, 407
BsrFI RCCGGY 2 cut(s) 670, 1168
BsrI ACTGG 1 cut(s) 570
BssAI RCCGGY 2 cut(s) 670, 1168
BssECI CCNNGG 2 cut(s) 455, 1266
BssMI GATC 6 cut(s) 11, 505, 631, 778, 1251, 1416
BssT1I CCWWGG 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 808
Bst4CI ACNGT 3 cut(s) 44, 702, 908
Bst6I CTCTTC 1 cut(s) 1029
BstAPI GCANNNNNTGC 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 171
BstC8I GCNNGC 4 cut(s) 54, 336, 879, 979
BstDEI CTNAG 5 cut(s) 192, 297, 547, 890, 1326
BstF5I GGATG 3 cut(s) 483, 881, 1309
BstFNI CGCG 5 cut(s) 213, 360, 596, 598, 1247
BstHHI GCGC 4 cut(s) 215, 362, 598, 1247
BstKTI GATC 6 cut(s) 14, 508, 634, 781, 1254, 1419
BstMAI GTCTC 1 cut(s) 1376
BstMBI GATC 6 cut(s) 11, 505, 631, 778, 1251, 1416
BstMWI GCNNNNNNNGC 7 cut(s) 185, 202, 221, 392, 401, 729, 974
BstNI CCWGG 1 cut(s) 808
BstNSI RCATGY 2 cut(s) 452, 1412
BstSCI CCNGG 2 cut(s) 806, 1265
BstSFI CTRYAG 1 cut(s) 1425
BstUI CGCG 5 cut(s) 213, 360, 596, 598, 1247
BstV1I GCAGC 5 cut(s) 33, 46, 615, 846, 1411
BstV2I GAAGAC 2 cut(s) 644, 1011
BstX2I RGATCY 3 cut(s) 11, 505, 778
BstYI RGATCY 3 cut(s) 11, 505, 778
Bsu15I ATCGAT 2 cut(s) 630, 767
Bsu36I CCTNAGG 1 cut(s) 297
BsuRI GGCC 2 cut(s) 569, 1168
BsuTUI ATCGAT 2 cut(s) 630, 767
BtgZI GCGATG 2 cut(s) 1262, 1337
BtsCI GGATG 3 cut(s) 483, 881, 1309
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 133, 913
BveI ACCTGC 1 cut(s) 972
Cac8I GCNNGC 4 cut(s) 54, 336, 879, 979
CfoI GCGC 4 cut(s) 215, 362, 598, 1247
Cfr10I RCCGGY 2 cut(s) 670, 1168
Cfr13I GGNCC 1 cut(s) 355
ClaI ATCGAT 2 cut(s) 630, 767
CseI GACGC 2 cut(s) 139, 165
Csp6I GTAC 3 cut(s) 168, 563, 590
CviAII CATG 6 cut(s) 78, 140, 449, 642, 1379, 1409
CviQI GTAC 3 cut(s) 168, 563, 590
DdeI CTNAG 5 cut(s) 192, 297, 547, 890, 1326
DpnI GATC 6 cut(s) 13, 507, 633, 780, 1253, 1418
DpnII GATC 6 cut(s) 11, 505, 631, 778, 1251, 1416
DraI TTTAAA 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 1 cut(s) 1029
EarI CTCTTC 1 cut(s) 1029
Eco130I CCWWGG 1 cut(s) 455
Eco32I GATATC 2 cut(s) 420, 628
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 638, 795
Eco81I CCTNAGG 1 cut(s) 297
Eco88I CYCGRG 2 cut(s) 750, 948
EcoRII CCWGG 1 cut(s) 806
EcoRV GATATC 2 cut(s) 420, 628
EcoT14I CCWWGG 1 cut(s) 455
EcoT22I ATGCAT 1 cut(s) 1341
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 6 cut(s) 81, 143, 452, 645, 1382, 1412
FaqI GGGAC 1 cut(s) 368
FatI CATG 6 cut(s) 77, 139, 448, 641, 1378, 1408
FbaI TGATCA 1 cut(s) 1416
Fnu4HI GCNGC 8 cut(s) 22, 25, 35, 570, 604, 659, 860, 1425
FokI GGATG 3 cut(s) 470, 868, 1316
Fsp4HI GCNGC 8 cut(s) 22, 25, 35, 570, 604, 659, 860, 1425
FspBI CTAG 3 cut(s) 335, 1164, 1386
GlaI GCGC 4 cut(s) 214, 361, 597, 1246
GluI GCNGC 8 cut(s) 22, 25, 35, 570, 604, 659, 860, 1425
HaeIII GGCC 2 cut(s) 569, 1168
HapII CCGG 3 cut(s) 671, 1169, 1266
HgaI GACGC 2 cut(s) 139, 165
HhaI GCGC 4 cut(s) 215, 362, 598, 1247
Hin1II CATG 6 cut(s) 81, 143, 452, 645, 1382, 1412
Hin6I GCGC 4 cut(s) 213, 360, 596, 1245
HinP1I GCGC 4 cut(s) 213, 360, 596, 1245
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 4 cut(s) 545, 764, 951, 1157
HpaII CCGG 3 cut(s) 671, 1169, 1266
HphI GGTGA 3 cut(s) 66, 773, 1019
Hpy166II GTNNAC 2 cut(s) 83, 372
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 15, 1318
Hpy8I GTNNAC 2 cut(s) 83, 372
HpyAV CCTTC 2 cut(s) 317, 1271
HpyCH4III ACNGT 3 cut(s) 44, 702, 908
HpyCH4IV ACGT 3 cut(s) 170, 497, 897
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 202, 221, 392, 401, 729, 974
HpyF3I CTNAG 5 cut(s) 192, 297, 547, 890, 1326
HpySE526I ACGT 3 cut(s) 170, 497, 897
Hsp92II CATG 6 cut(s) 81, 143, 452, 645, 1382, 1412
HspAI GCGC 4 cut(s) 213, 360, 596, 1245
Ksp22I TGATCA 1 cut(s) 1416
Kzo9I GATC 6 cut(s) 11, 505, 631, 778, 1251, 1416
Lsp1109I GCAGC 5 cut(s) 33, 46, 615, 846, 1411
LweI GCATC 9 cut(s) 46, 197, 373, 382, 759, 890, 1103, 1360, 1379
MaeI CTAG 3 cut(s) 335, 1164, 1386
MaeII ACGT 3 cut(s) 170, 497, 897
MaeIII GTNAC 3 cut(s) 275, 798, 902
MalI GATC 6 cut(s) 13, 507, 633, 780, 1253, 1418
MboI GATC 6 cut(s) 11, 505, 631, 778, 1251, 1416
MboII GAAGA 8 cut(s) 332, 414, 644, 773, 788, 1007, 1011, 1016
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 3 cut(s) 11, 505, 778
MluCI AATT 8 cut(s) 149, 387, 915, 941, 971, 1077, 1345, 1400
MlyI GAGTC 2 cut(s) 539, 960
MmeI TCCRAC 3 cut(s) 909, 979, 1079
MnlI CCTC 9 cut(s) 259, 306, 727, 752, 899, 957, 1054, 1057, 1181
Mph1103I ATGCAT 1 cut(s) 1341
MroXI GAANNNNTTC 1 cut(s) 780
MslI CAYNNNNRTG 2 cut(s) 138, 1356
MspA1I CMGCKG 1 cut(s) 859
MspI CCGG 3 cut(s) 671, 1169, 1266
MspR9I CCNGG 2 cut(s) 808, 1267
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 1339
MvaI CCWGG 1 cut(s) 808
MvnI CGCG 5 cut(s) 213, 360, 596, 598, 1247
MwoI GCNNNNNNNGC 7 cut(s) 185, 202, 221, 392, 401, 729, 974
NciI CCSGG 1 cut(s) 1267
NdeII GATC 6 cut(s) 11, 505, 631, 778, 1251, 1416
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 6 cut(s) 81, 143, 452, 645, 1382, 1412
NlaIV GGNNCC 5 cut(s) 13, 294, 356, 748, 1264
NmuCI GTSAC 1 cut(s) 902
NsiI ATGCAT 1 cut(s) 1341
NspI RCATGY 2 cut(s) 452, 1412
PaeR7I CTCGAG 1 cut(s) 948
PciI ACATGT 2 cut(s) 448, 1408
PctI GAATGC 1 cut(s) 1339
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 2 cut(s) 764, 1157
PflFI GACNNNGTC 1 cut(s) 908
PflMI CCANNNNNTGG 2 cut(s) 351, 642
PkrI GCNGC 8 cut(s) 23, 26, 36, 571, 605, 660, 861, 1426
PleI GAGTC 2 cut(s) 539, 959
PpsI GAGTC 2 cut(s) 539, 959
Ppu21I YACGTR 1 cut(s) 171
PscI ACATGT 2 cut(s) 448, 1408
Psp6I CCWGG 1 cut(s) 806
PspGI CCWGG 1 cut(s) 806
PspN4I GGNNCC 5 cut(s) 13, 294, 356, 748, 1264
PspPI GGNCC 1 cut(s) 355
PspXI VCTCGAGB 1 cut(s) 948
PstI CTGCAG 1 cut(s) 1429
PsuI RGATCY 3 cut(s) 11, 505, 778
PsyI GACNNNGTC 1 cut(s) 908
RsaI GTAC 3 cut(s) 169, 564, 591
RsaNI GTAC 3 cut(s) 168, 563, 590
RseI CAYNNNNRTG 2 cut(s) 138, 1356
SatI GCNGC 8 cut(s) 22, 25, 35, 570, 604, 659, 860, 1425
Sau3AI GATC 6 cut(s) 11, 505, 631, 778, 1251, 1416
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 2 cut(s) 539, 960
ScrFI CCNGG 2 cut(s) 808, 1267
SfaNI GCATC 9 cut(s) 46, 197, 373, 382, 759, 890, 1103, 1360, 1379
SfcI CTRYAG 1 cut(s) 1425
Sfr274I CTCGAG 1 cut(s) 948
SinI GGWCC 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 948
SmiMI CAYNNNNRTG 2 cut(s) 138, 1356
SmlI CTYRAG 3 cut(s) 794, 948, 1316
SmoI CTYRAG 3 cut(s) 794, 948, 1316
Sse9I AATT 8 cut(s) 149, 387, 915, 941, 971, 1077, 1345, 1400
SsiI CCGC 6 cut(s) 25, 203, 358, 570, 659, 857
SspI AATATT 1 cut(s) 1014
SspMI CTAG 3 cut(s) 335, 1164, 1386
StyD4I CCNGG 2 cut(s) 806, 1265
StyI CCWWGG 1 cut(s) 455
TaaI ACNGT 3 cut(s) 44, 702, 908
TaiI ACGT 3 cut(s) 173, 500, 900
TaqI TCGA 8 cut(s) 234, 630, 767, 818, 949, 1155, 1230, 1311
TasI AATT 8 cut(s) 149, 387, 915, 941, 971, 1077, 1345, 1400
TauI GCSGC 3 cut(s) 27, 572, 661
TfiI GAWTC 2 cut(s) 764, 1157
TscAI CASTG 2 cut(s) 140, 913
TseFI GTSAC 1 cut(s) 902
TseI GCWGC 5 cut(s) 21, 34, 603, 859, 1424
Tsp45I GTSAC 1 cut(s) 902
TspDTI ATGAA 7 cut(s) 54, 81, 106, 252, 841, 1149, 1320
TspGWI ACGGA 2 cut(s) 218, 926
TspRI CASTG 2 cut(s) 140, 913
Tth111I GACNNNGTC 1 cut(s) 908
Van91I CCANNNNNTGG 2 cut(s) 351, 642
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 3 cut(s) 941, 1345, 1400
XceI RCATGY 2 cut(s) 452, 1412
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XhoI CTCGAG 1 cut(s) 948
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 3 cut(s) 335, 1164, 1386
Zsp2I ATGCAT 1 cut(s) 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.