Prupe.5G187000_v2.0.a1

Isochorismate synthase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
15443475 .. 15448504
5030 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G187000.3

Sequence Viewer

Length: 1680 bp
ATGGCCGCTGCTGCTGCAAGCCGTTGCCTTGCATGTTTCATGGACCCAGAAGCAGCCAAATGCAGCATAACAATTTCCAGCAGGCAAACCATTAATTTCTCTCACCACCATAGGTCTCATTTGTGTTCGCTTTCCATGAATGGCTGCCAAGGAGACCCTCACTTCCCTTTAGGTACCATTGAAACGCGTTCATTTCCAGCAATTCCATCGCCTTCCTTGGCTCTGGACAGGCTCAACTCCGCCATTTCTGAATTGAAAGCAAACCCACCTTCTTCTACCTCCGGAATTATACGTCTCCAGGTGCCAATCCAGCAGCAAATTGAAGCCATTGATTGGCTATATGCGCAACACCAATTCCTTCCCCGCTGCTATTTCTCCGGTAGGGGCCAAACCAGTAATTCTTCTGATCTTTCCATTGATTACACCAATGGGAATGACCAGATTCAATCGGAACACAACTTGGTCAGCGTTGCTGGTGTGGGGTCTGCAGTTTTCTTTCAGGATCTGCATCCTTTCTCATATAGGCATTGGAAGTCCTTAAAGAGATTCCTCTCAACACAATGTCCGCTTATTCGCACTTATGGGGCAATCCGTTTTGATGCAAGAGCCAACATATCATCTGAATGGGAGGCATTTGGTTACTTTTATTTTATGGTCCCTCAGGTTGAGTTTGATGAGCTTGAAGAAGGTTCAATGCTGGCAGCAACTGTTGCCTGGGACAATGCCCTCTCATGGAATTTGGGACATGCAATTGATGCACTTAAAGCTACACTGAGCCAGATATCTTCTGTCGTTTTGAAGCAACGAAGACAAGTTCCTTGGACACCAATGTTAAGCAATAATCACATCCCGAGTAAGACATACTGGAATCTTGCTGTTAATAGAGCTTTGCAGAAAATAAGAAGCAACTCAGCCCTTATTAAGGTGGTACTCGCACGTCGCAGCACAGTAATAACAGCAACTGATATTGATCCCATAGCATGGTTAGCTTGCTTACAGGTTGAAGGTGAAAATGCTTATCAGTTCTGTCTTCAGCCACCTAATGCACCAGCATTCATTGGAAACACGCCAGAGCAACTATTTCACAGAAAATGGCTTGGCATTACTAGTGAAGCTCTGGCTGGAACCAGAGCCAGAGGCAAATCAATGCCTGAAGATCTTCAAATAGAACTTGAATTACTTTCCAGTCCCAAGGACCACCTCGAGTTTACTATTGTACAAGAAAGCATAAGAAGAAAACTAGAGAATGTATGTAACAGTGTCCTAGTTGAACCAAAGAAAGCAATCCGTAAGCTCCCTAGAGTCCAACATTTATATGCCAAATTGGCTGGCAGGTTAAGAAGCGAAGAGGATGAGTTTGACATATTGTCATCTCTTCATCCAAGTCCAGCAGTTTGTGGATTTCCAACAGAGGAGGCACGGGTTTTAATTGCAGAAACAGAAGTATTTGACCGAGGGATGTATGCTGGGCCAGTTGGTTGGTTTGGAGGAGGAGAGAGTGAGTTTGCCGTTGGCATTAGATCAGCATTGGTGGAAAAGGGTCTTGGCGCAATGATTTTTGCTGGAACAGGGGTTGTGGAAGGAAGTAATGCATCATTAGAATGGGATGAACTGGAACTCAAGATTTCTCAGTTCACCAAGTTGCTTAAACTTGAAGTCCCTTTAGAGATTAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

62.03

Weight (kDa)

6.33

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 345
Acc36I ACCTGC 1 cut(s) 1323
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 2 cut(s) 173, 301
AccB7I CCANNNNNTGG 2 cut(s) 333, 981
AccII CGCG 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 281
AciI CCGC 4 cut(s) 6, 240, 364, 566
AclWI GGATC 2 cut(s) 510, 965
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 736
AcuI CTGAAG 2 cut(s) 1016, 1173
AfaI GTAC 3 cut(s) 175, 930, 1218
AfiI CCNNNNNNNGG 4 cut(s) 333, 732, 922, 981
AflIII ACRYGT 1 cut(s) 185
AhdI GACNNNNNGTC 1 cut(s) 1366
AhlI ACTAGT 1 cut(s) 1106
AjiI CACGTC 1 cut(s) 938
AjnI CCWGG 2 cut(s) 297, 713
AjuI GAANNNNNNNTTGG 2 cut(s) 1527, 1559
AluBI AGCT 7 cut(s) 679, 767, 887, 989, 1115, 1294, 1677
AluI AGCT 7 cut(s) 679, 767, 887, 989, 1115, 1294, 1677
Alw26I GTCTC 3 cut(s) 120, 147, 299
AlwI GGATC 2 cut(s) 510, 965
AlwNI CAGNNNCTG 3 cut(s) 505, 707, 962
Ama87I CYCGRG 2 cut(s) 850, 1202
Aor13HI TCCGGA 1 cut(s) 281
AoxI GGCC 3 cut(s) 3, 385, 1469
ApoI RAATTY 1 cut(s) 736
AseI ATTAAT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 1158
Asp718I GGTACC 1 cut(s) 173
AspLEI GCGC 2 cut(s) 346, 1550
AspS9I GGNCC 5 cut(s) 43, 385, 655, 1195, 1469
AsuHPI GGTGA 3 cut(s) 95, 1019, 1627
AvaI CYCGRG 2 cut(s) 850, 1202
AvaII GGWCC 3 cut(s) 43, 655, 1195
AxyI CCTNAGG 1 cut(s) 660
BanI GGYRCC 2 cut(s) 173, 301
BbsI GAAGAC 2 cut(s) 814, 1022
BbvI GCAGC 7 cut(s) 65, 75, 131, 325, 353, 713, 954
BccI CCATC 1 cut(s) 214
BceAI ACGGC 2 cut(s) 6, 1493
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 2 cut(s) 299, 715
BcoDI GTCTC 3 cut(s) 120, 147, 299
BcuI ACTAGT 1 cut(s) 1106
BfaI CTAG 4 cut(s) 1107, 1241, 1265, 1299
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 1323
BglI GCCNNNNNGGC 1 cut(s) 1325
BglII AGATCT 1 cut(s) 1156
Bme1390I CCNGG 2 cut(s) 299, 715
Bme18I GGWCC 3 cut(s) 43, 655, 1195
BmeRI GACNNNNNGTC 1 cut(s) 1366
BmeT110I CYCGRG 2 cut(s) 850, 1202
BmgBI CACGTC 1 cut(s) 938
BmgT120I GGNCC 5 cut(s) 43, 385, 655, 1195, 1469
BmiI GGNNCC 6 cut(s) 45, 175, 303, 386, 657, 1126
BmrFI CCNGG 2 cut(s) 299, 715
BmsI GCATC 4 cut(s) 517, 589, 745, 1601
BpiI GAAGAC 2 cut(s) 814, 1022
BpmI CTGGAG 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 1604
BsaBI GATNNNNATC 2 cut(s) 507, 969
BsaI GGTCTC 2 cut(s) 120, 147
BsaJI CCNNGG 6 cut(s) 148, 216, 714, 818, 1191, 1453
BsaWI WCCGGW 2 cut(s) 281, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 333, 732, 922, 981
Bse1I ACTGG 5 cut(s) 393, 869, 1185, 1472, 1617
Bse21I CCTNAGG 1 cut(s) 660
Bse3DI GCAATG 1 cut(s) 1557
Bse8I GATNNNNATC 2 cut(s) 507, 969
BseAI TCCGGA 1 cut(s) 281
BseBI CCWGG 2 cut(s) 299, 715
BseDI CCNNGG 6 cut(s) 148, 216, 714, 818, 1191, 1453
BseGI GGATG 6 cut(s) 508, 846, 1357, 1378, 1464, 1612
BseJI GATNNNNATC 2 cut(s) 507, 969
BseLI CCNNNNNNNGG 4 cut(s) 333, 732, 922, 981
BseMI GCAATG 1 cut(s) 1557
BseMII CTCAG 4 cut(s) 674, 764, 924, 1643
BseNI ACTGG 5 cut(s) 393, 869, 1185, 1472, 1617
BseRI GAGGAG 3 cut(s) 1427, 1503, 1506
BseXI GCAGC 7 cut(s) 65, 75, 131, 325, 353, 713, 954
BseYI CCCAGC 1 cut(s) 1466
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 5, 387, 1471
BshNI GGYRCC 2 cut(s) 173, 301
BsiHKCI CYCGRG 2 cut(s) 850, 1202
BsiSI CCGG 2 cut(s) 282, 378
BslFI GGGAC 5 cut(s) 641, 731, 756, 1173, 1643
BslI CCNNNNNNNGG 4 cut(s) 333, 732, 922, 981
BsmAI GTCTC 3 cut(s) 120, 147, 299
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 5 cut(s) 641, 731, 756, 1173, 1643
BsmI GAATGC 1 cut(s) 1052
BsnI GGCC 3 cut(s) 5, 387, 1471
Bso31I GGTCTC 2 cut(s) 120, 147
BsoBI CYCGRG 2 cut(s) 850, 1202
Bsp13I TCCGGA 1 cut(s) 281
Bsp1407I TGTACA 1 cut(s) 1216
Bsp143I GATC 5 cut(s) 406, 502, 970, 1156, 1520
BspACI CCGC 4 cut(s) 6, 240, 364, 566
BspANI GGCC 3 cut(s) 5, 387, 1471
BspCNI CTCAG 4 cut(s) 673, 765, 923, 1642
BspEI TCCGGA 1 cut(s) 281
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 6 cut(s) 45, 175, 303, 386, 657, 1126
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 1323
BspPI GGATC 2 cut(s) 510, 965
BspT107I GGYRCC 2 cut(s) 173, 301
BspTNI GGTCTC 2 cut(s) 120, 147
BsrDI GCAATG 1 cut(s) 1557
BsrGI TGTACA 1 cut(s) 1216
BsrI ACTGG 5 cut(s) 393, 869, 1185, 1472, 1617
BssECI CCNNGG 6 cut(s) 148, 216, 714, 818, 1191, 1453
BssMI GATC 5 cut(s) 406, 502, 970, 1156, 1520
BssT1I CCWWGG 4 cut(s) 148, 216, 818, 1191
Bst2UI CCWGG 2 cut(s) 299, 715
Bst4CI ACNGT 3 cut(s) 709, 949, 1259
Bst6I CTCTTC 2 cut(s) 1341, 1380
BstAPI GCANNNNNTGC 2 cut(s) 710, 755
BstAUI TGTACA 1 cut(s) 1216
BstC8I GCNNGC 5 cut(s) 19, 83, 699, 991, 1330
BstDEI CTNAG 4 cut(s) 660, 773, 910, 1629
BstENI CCTNNNNNAGG 1 cut(s) 920
BstF5I GGATG 6 cut(s) 508, 846, 1357, 1378, 1464, 1612
BstFNI CGCG 1 cut(s) 187
BstHHI GCGC 2 cut(s) 346, 1550
BstKTI GATC 5 cut(s) 409, 505, 973, 1159, 1523
BstMAI GTCTC 3 cut(s) 120, 147, 299
BstMBI GATC 5 cut(s) 406, 502, 970, 1156, 1520
BstMWI GCNNNNNNNGC 9 cut(s) 11, 14, 310, 343, 710, 755, 764, 986, 1325
BstNI CCWGG 2 cut(s) 299, 715
BstNSI RCATGY 2 cut(s) 36, 749
BstSCI CCNGG 2 cut(s) 297, 713
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 7 cut(s) 65, 75, 131, 325, 353, 713, 954
BstV2I GAAGAC 2 cut(s) 814, 1022
BstX2I RGATCY 2 cut(s) 502, 1156
BstXI CCANNNNNNTGG 1 cut(s) 1479
BstYI RGATCY 2 cut(s) 502, 1156
Bsu36I CCTNAGG 1 cut(s) 660
BsuRI GGCC 3 cut(s) 5, 387, 1471
BtgZI GCGATG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 938
BtsCI GGATG 6 cut(s) 508, 846, 1357, 1378, 1464, 1612
BtsIMutI CAGTG 2 cut(s) 770, 1264
BveI ACCTGC 1 cut(s) 1323
Cac8I GCNNGC 5 cut(s) 19, 83, 699, 991, 1330
CaiI CAGNNNCTG 3 cut(s) 505, 707, 962
CfoI GCGC 2 cut(s) 346, 1550
Cfr13I GGNCC 5 cut(s) 43, 385, 655, 1195, 1469
Csp6I GTAC 3 cut(s) 174, 929, 1217
CviAII CATG 6 cut(s) 33, 40, 136, 732, 746, 981
CviQI GTAC 3 cut(s) 174, 929, 1217
DdeI CTNAG 4 cut(s) 660, 773, 910, 1629
DpnI GATC 5 cut(s) 408, 504, 972, 1158, 1522
DpnII GATC 5 cut(s) 406, 502, 970, 1156, 1520
DriI GACNNNNNGTC 1 cut(s) 1366
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 1341, 1380
Eam1105I GACNNNNNGTC 1 cut(s) 1366
EarI CTCTTC 2 cut(s) 1341, 1380
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 4 cut(s) 148, 216, 818, 1191
Eco31I GGTCTC 2 cut(s) 120, 147
Eco32I GATATC 1 cut(s) 783
Eco47I GGWCC 3 cut(s) 43, 655, 1195
Eco57I CTGAAG 2 cut(s) 1016, 1173
Eco81I CCTNAGG 1 cut(s) 660
Eco88I CYCGRG 2 cut(s) 850, 1202
EcoNI CCTNNNNNAGG 1 cut(s) 920
EcoRII CCWGG 2 cut(s) 297, 713
EcoRV GATATC 1 cut(s) 783
EcoT14I CCWWGG 4 cut(s) 148, 216, 818, 1191
EcoT22I ATGCAT 1 cut(s) 1594
ErhI CCWWGG 4 cut(s) 148, 216, 818, 1191
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 6 cut(s) 36, 43, 139, 735, 749, 984
FaqI GGGAC 5 cut(s) 641, 731, 756, 1173, 1643
FatI CATG 6 cut(s) 32, 39, 135, 731, 745, 980
FauI CCCGC 1 cut(s) 371
FokI GGATG 6 cut(s) 495, 833, 1364, 1365, 1471, 1619
FspBI CTAG 4 cut(s) 1107, 1241, 1265, 1299
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 2 cut(s) 345, 1549
GsaI CCCAGC 1 cut(s) 1470
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 3 cut(s) 5, 387, 1471
HapII CCGG 2 cut(s) 282, 378
HhaI GCGC 2 cut(s) 346, 1550
Hin1II CATG 6 cut(s) 36, 43, 139, 735, 749, 984
Hin6I GCGC 2 cut(s) 344, 1548
HinP1I GCGC 2 cut(s) 344, 1548
HinfI GANTC 4 cut(s) 442, 546, 868, 1302
HpaII CCGG 2 cut(s) 282, 378
HphI GGTGA 3 cut(s) 95, 1019, 1627
Hpy166II GTNNAC 2 cut(s) 1209, 1635
Hpy188I TCNGA 4 cut(s) 250, 406, 451, 622
Hpy188III TCNNGA 5 cut(s) 224, 282, 500, 850, 1621
Hpy8I GTNNAC 2 cut(s) 1209, 1635
Hpy99I CGWCG 1 cut(s) 942
HpyAV CCTTC 6 cut(s) 222, 279, 368, 680, 998, 1574
HpyCH4III ACNGT 3 cut(s) 709, 949, 1259
HpyCH4IV ACGT 2 cut(s) 292, 937
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 14, 310, 343, 710, 755, 764, 986, 1325
HpyF3I CTNAG 4 cut(s) 660, 773, 910, 1629
HpySE526I ACGT 2 cut(s) 292, 937
Hsp92II CATG 6 cut(s) 36, 43, 139, 735, 749, 984
HspAI GCGC 2 cut(s) 344, 1548
Kpn2I TCCGGA 1 cut(s) 281
KpnI GGTACC 1 cut(s) 177
Kzo9I GATC 5 cut(s) 406, 502, 970, 1156, 1520
LmnI GCTCC 1 cut(s) 1299
Lsp1109I GCAGC 7 cut(s) 65, 75, 131, 325, 353, 713, 954
LweI GCATC 4 cut(s) 517, 589, 745, 1601
MaeI CTAG 4 cut(s) 1107, 1241, 1265, 1299
MaeII ACGT 2 cut(s) 292, 937
MaeIII GTNAC 2 cut(s) 638, 1253
MalI GATC 5 cut(s) 408, 504, 972, 1158, 1522
MboI GATC 5 cut(s) 406, 502, 970, 1156, 1520
MfeI CAATTG 1 cut(s) 750
MflI RGATCY 2 cut(s) 502, 1156
MluI ACGCGT 1 cut(s) 185
MlyI GAGTC 1 cut(s) 1311
MmeI TCCRAC 2 cut(s) 1330, 1430
Mph1103I ATGCAT 1 cut(s) 1594
MroI TCCGGA 1 cut(s) 281
MroXI GAANNNNTTC 1 cut(s) 1158
MslI CAYNNNNRTG 3 cut(s) 622, 1314, 1600
MspA1I CMGCKG 2 cut(s) 8, 366
MspI CCGG 2 cut(s) 282, 378
MspR9I CCNGG 2 cut(s) 299, 715
MunI CAATTG 1 cut(s) 750
Mva1269I GAATGC 1 cut(s) 1052
MvaI CCWGG 2 cut(s) 299, 715
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 9 cut(s) 11, 14, 310, 343, 710, 755, 764, 986, 1325
NdeII GATC 5 cut(s) 406, 502, 970, 1156, 1520
NlaIII CATG 6 cut(s) 36, 43, 139, 735, 749, 984
NlaIV GGNNCC 6 cut(s) 45, 175, 303, 386, 657, 1126
NsbI TGCGCA 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 1594
NspI RCATGY 2 cut(s) 36, 749
PaeR7I CTCGAG 1 cut(s) 1202
PctI GAATGC 1 cut(s) 1052
PdmI GAANNNNTTC 1 cut(s) 1158
PfeI GAWTC 3 cut(s) 442, 546, 868
PflMI CCANNNNNTGG 2 cut(s) 333, 981
PleI GAGTC 1 cut(s) 1310
PpsI GAGTC 1 cut(s) 1310
PshBI ATTAAT 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 297, 713
PspFI CCCAGC 1 cut(s) 1466
PspGI CCWGG 2 cut(s) 297, 713
PspN4I GGNNCC 6 cut(s) 45, 175, 303, 386, 657, 1126
PspPI GGNCC 5 cut(s) 43, 385, 655, 1195, 1469
PspXI VCTCGAGB 1 cut(s) 1202
PsrI GAACNNNNNNTAC 2 cut(s) 1161, 1193
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 3 cut(s) 505, 707, 962
PsuI RGATCY 2 cut(s) 502, 1156
RsaI GTAC 3 cut(s) 175, 930, 1218
RsaNI GTAC 3 cut(s) 174, 929, 1217
RseI CAYNNNNRTG 3 cut(s) 622, 1314, 1600
Sau3AI GATC 5 cut(s) 406, 502, 970, 1156, 1520
Sau96I GGNCC 5 cut(s) 43, 385, 655, 1195, 1469
SchI GAGTC 1 cut(s) 1311
ScrFI CCNGG 2 cut(s) 299, 715
SfaNI GCATC 4 cut(s) 517, 589, 745, 1601
SfcI CTRYAG 1 cut(s) 486
Sfr274I CTCGAG 1 cut(s) 1202
SinI GGWCC 3 cut(s) 43, 655, 1195
SlaI CTCGAG 1 cut(s) 1202
SmiMI CAYNNNNRTG 3 cut(s) 622, 1314, 1600
SmlI CTYRAG 2 cut(s) 1202, 1619
SmoI CTYRAG 2 cut(s) 1202, 1619
SpeI ACTAGT 1 cut(s) 1106
SsiI CCGC 4 cut(s) 6, 240, 364, 566
SspMI CTAG 4 cut(s) 1107, 1241, 1265, 1299
StyD4I CCNGG 2 cut(s) 297, 713
StyI CCWWGG 4 cut(s) 148, 216, 818, 1191
TaaI ACNGT 3 cut(s) 709, 949, 1259
TaiI ACGT 2 cut(s) 295, 940
TaqI TCGA 1 cut(s) 1203
TaqII GACCGA 1 cut(s) 1467
TatI WGTACW 1 cut(s) 1216
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 442, 546, 868
TscAI CASTG 2 cut(s) 777, 1264
TspDTI ATGAA 6 cut(s) 28, 152, 180, 1045, 1367, 1623
TspGWI ACGGA 2 cut(s) 581, 1277
TspRI CASTG 2 cut(s) 777, 1264
Van91I CCANNNNNTGG 2 cut(s) 333, 981
VpaK11BI GGWCC 3 cut(s) 43, 655, 1195
VspI ATTAAT 1 cut(s) 93
XagI CCTNNNNNAGG 1 cut(s) 920
XapI RAATTY 1 cut(s) 736
XceI RCATGY 2 cut(s) 36, 749
XhoI CTCGAG 1 cut(s) 1202
XmnI GAANNNNTTC 1 cut(s) 1158
XspI CTAG 4 cut(s) 1107, 1241, 1265, 1299
Zsp2I ATGCAT 1 cut(s) 1594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.