Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014326

Physical Location & Seq

Genomic Coordinates Reverse (-)

28157386 .. 28159317

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCGTCGATTACGAACCTCGCCTCTTCTCTCTCTTCACTCTCGTTCTCCTCCCAAGTTTCTCAAAGACCTAACACCATTTCCTTCCCCCGCGCGAATTCAGTATTCGCATTACCGGCGAAATCCGCACGCCGCGCTTCTCTATCTATCACCGCCACGGTATCTGCTCCACCGGAGGAGGAGGAGATAGTTGAACTGAAGAAATACGTCAAATCGAGGCTTCCCGGAGGATTTGCTGCTCAGAAGATTATTGGCACTGGACGACGTAAGTGCGCAATCGCTAGAGTTGTTCTTCAGGAAGGTACTGGGAAGGTTATCATCAACTATCGTGATGCCAAGGAGTACCTTCAGGGAAATCCATTGTGGCTTCAGTATGTTAAAGTACCATTGGTGACTTTAGGATATGAGAATAGCTACGACATATTTGTGAAAGCCCATGGAGGCGGTCTCTCAGGTCAAGCTCAAGCAATTACCTTGGGAGTCGCACGTGCACTCCTGAAGGTAAGTGCAGACCACAGATCGCCTTTGAAGAAGGAAGGTTTGCTCACTAGAGATGCGAGAGTGGTTGAAAGAAAGAAGGCCGGGCTCAAGAAGGCGCGTAAAGCCCCACAATTCTCCAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000312 GO:0000313 GO:0000314 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0030490 GO:0031967 GO:0031975 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

208

Amino Acids

22.58

Weight (kDa)

10.46

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	87 - 208	1.8e-42	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74970
fragaria_vesca	FvH4_5g26680
malus_domestica	MD09G1065100.v1.1 MD17G1058000.v1.1
prunus_persica	Prupe.4G129500_v2.0.a1
pyrus_communis	pycom111g05500 pycom17g05810
rosa_chinensis	RchiOBHm_Chr7g0217571
rosa_laevigata	RLG00000002460
rosa_multiflora	Rmu_sc0006161.1_g000004
rosa_roxburghii	Rroxscaffold_3G00241860
rosa_rugosa	Rorug07G0170300
rosa_samantha	Rh7AG309900 Rh7BG301100 Rh7CG329100 Rh7DG309600
rosa_wichuraiana	Rw7G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	274
AccII	CGCG	4 cut(s)	93, 95, 135, 598
AciI	CCGC	5 cut(s)	91, 126, 133, 153, 444
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	5 cut(s)	218, 278, 332, 353, 518
AcvI	CACGTG	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	304, 344, 384
AgsI	TTSAA	3 cut(s)	194, 529, 569
AluBI	AGCT	2 cut(s)	414, 461
AluI	AGCT	2 cut(s)	414, 461
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	452
Alw44I	GTGCAC	1 cut(s)	489
AoxI	GGCC	1 cut(s)	579
ApaLI	GTGCAC	1 cut(s)	489
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	4 cut(s)	95, 137, 275, 598
AsuC2I	CCSGG	2 cut(s)	225, 583
AsuHPI	GGTGA	2 cut(s)	142, 403
BaeGI	GKGCMC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	588
BbrPI	CACGTG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	252, 286
BcnI	CCSGG	2 cut(s)	225, 583
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	282, 549
BisI	GCNGC	2 cut(s)	133, 237
BlsI	GCNGC	2 cut(s)	134, 238
Bme1390I	CCNGG	2 cut(s)	225, 583
BmrFI	CCNGG	2 cut(s)	225, 583
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	322, 544
BmuI	ACTGGG	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BpuEI	CTTGAG	2 cut(s)	447, 572
BpuMI	CCSGG	2 cut(s)	225, 583
BsaAI	YACGTR	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	4 cut(s)	156, 336, 436, 474
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	262, 310
BseDI	CCNNGG	4 cut(s)	156, 336, 436, 474
BseMII	CTCAG	2 cut(s)	254, 465
BseNI	ACTGG	2 cut(s)	262, 310
BseRI	GAGGAG	4 cut(s)	40, 191, 194, 197
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	4 cut(s)	93, 95, 135, 598
BshFI	GGCC	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	4 cut(s)	116, 173, 225, 582
BsmAI	GTCTC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	581
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	493, 588
Bsp143I	GATC	1 cut(s)	518
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	5 cut(s)	91, 126, 133, 153, 444
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	2 cut(s)	253, 464
BspFNI	CGCG	4 cut(s)	93, 95, 135, 598
BspTNI	GGTCTC	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	262, 310
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	4 cut(s)	156, 336, 436, 474
BssMI	GATC	1 cut(s)	518
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	336, 436, 474
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	31, 40
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	240, 451
BstDSI	CCRYGG	2 cut(s)	156, 436
BstFNI	CGCG	4 cut(s)	93, 95, 135, 598
BstHHI	GCGC	4 cut(s)	95, 137, 275, 598
BstKTI	GATC	1 cut(s)	521
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 125, 134, 602
BstSCI	CCNGG	2 cut(s)	223, 581
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	4 cut(s)	93, 95, 135, 598
BstV1I	GCAGC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	581
BtgI	CCRYGG	2 cut(s)	156, 436
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	4 cut(s)	95, 137, 275, 598
Cfr10I	RCCGGY	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	303, 343, 383
CviAII	CATG	1 cut(s)	437
CviJI	RGCY	8 cut(s)	220, 367, 414, 434, 461, 581, 586, 605
CviKI_1	RGCY	8 cut(s)	220, 367, 414, 434, 461, 581, 586, 605
CviQI	GTAC	3 cut(s)	303, 343, 383
DdeI	CTNAG	2 cut(s)	240, 451
DpnI	GATC	1 cut(s)	520
DpnII	GATC	1 cut(s)	518
Eam1104I	CTCTTC	2 cut(s)	31, 40
EarI	CTCTTC	2 cut(s)	31, 40
Eco130I	CCWWGG	3 cut(s)	336, 436, 474
Eco24I	GRGCYC	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	452
Eco57I	CTGAAG	5 cut(s)	218, 278, 332, 353, 518
Eco72I	CACGTG	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	97
EcoT14I	CCWWGG	3 cut(s)	336, 436, 474
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	3 cut(s)	336, 436, 474
FaeI	CATG	1 cut(s)	440
FaiI	YATR	4 cut(s)	375, 405, 422, 438
FatI	CATG	1 cut(s)	436
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	133, 237
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	2 cut(s)	133, 237
FspBI	CTAG	2 cut(s)	282, 549
FspI	TGCGCA	1 cut(s)	274
GlaI	GCGC	4 cut(s)	94, 136, 274, 597
GluI	GCNGC	2 cut(s)	133, 237
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	4 cut(s)	116, 173, 225, 582
HhaI	GCGC	4 cut(s)	95, 137, 275, 598
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	4 cut(s)	93, 135, 273, 596
HinP1I	GCGC	4 cut(s)	93, 135, 273, 596
HinfI	GANTC	1 cut(s)	480
HpaII	CCGG	4 cut(s)	116, 173, 225, 582
HphI	GGTGA	2 cut(s)	142, 403
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	4 cut(s)	296, 329, 496, 589
Hpy8I	GTNNAC	1 cut(s)	491
Hpy99I	CGWCG	2 cut(s)	10, 267
HpyAV	CCTTC	9 cut(s)	94, 293, 304, 356, 493, 526, 530, 571, 586
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	3 cut(s)	207, 265, 487
HpyCH4V	TGCA	2 cut(s)	491, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 125, 134, 602
HpyF3I	CTNAG	2 cut(s)	240, 451
HpySE526I	ACGT	3 cut(s)	207, 265, 487
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	4 cut(s)	93, 135, 273, 596
Kzo9I	GATC	1 cut(s)	518
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	322, 544
MaeI	CTAG	2 cut(s)	282, 549
MaeII	ACGT	3 cut(s)	207, 265, 487
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	520
MboI	GATC	1 cut(s)	518
MboII	GAAGA	6 cut(s)	18, 27, 211, 256, 284, 541
MhlI	GDGCHC	2 cut(s)	493, 588
MluCI	AATT	3 cut(s)	97, 468, 611
MlyI	GAGTC	1 cut(s)	489
MnlI	CCTC	9 cut(s)	29, 34, 61, 169, 172, 175, 210, 221, 434
MseI	TTAA	2 cut(s)	378, 625
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	4 cut(s)	116, 173, 225, 582
MspR9I	CCNGG	2 cut(s)	225, 583
MvnI	CGCG	4 cut(s)	93, 95, 135, 598
MwoI	GCNNNNNNNGC	4 cut(s)	116, 125, 134, 602
NciI	CCSGG	2 cut(s)	225, 583
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	1 cut(s)	518
NlaIII	CATG	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	391
NsbI	TGCGCA	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	134, 238
PleI	GAGTC	1 cut(s)	488
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	488
PspCI	CACGTG	1 cut(s)	488
RsaI	GTAC	3 cut(s)	304, 344, 384
RsaNI	GTAC	3 cut(s)	303, 343, 383
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	378, 625
SatI	GCNGC	2 cut(s)	133, 237
Sau3AI	GATC	1 cut(s)	518
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	2 cut(s)	225, 583
SduI	GDGCHC	2 cut(s)	493, 588
SfaNI	GCATC	2 cut(s)	322, 544
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	462, 587
SmoI	CTYRAG	2 cut(s)	462, 587
Sse9I	AATT	3 cut(s)	97, 468, 611
SsiI	CCGC	5 cut(s)	91, 126, 133, 153, 444
SspMI	CTAG	2 cut(s)	282, 549
StyD4I	CCNGG	2 cut(s)	223, 581
StyI	CCWWGG	3 cut(s)	336, 436, 474
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	3 cut(s)	210, 268, 490
TaqI	TCGA	2 cut(s)	8, 215
TasI	AATT	3 cut(s)	97, 468, 611
TauI	GCSGC	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	378, 625
Tru9I	TTAA	2 cut(s)	378, 625
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	391
TspRI	CASTG	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	489
XapI	RAATTY	1 cut(s)	97
XspI	CTAG	2 cut(s)	282, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.