FvH4_5g26680

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014326
Physical Location & Seq
Forward (+)
18126003 .. 18128199
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26680.t1

Sequence Viewer

Length: 630 bp
ATGACGGCTTCCATACTAGCCCTCACTTCCTCCCTCTCTTCTCTCTCTTTTTCATCCAATGTTGCACAGAAACCTACCACTGTTTCATTTCTCCGTTCCAGATCAGCCTCTGTTGCAAACATATGTGGAACTCCTAGCCGTCTGCCTCGGCTTGTTGTCTCTGCCACCGTAGCTTCTCCAGAGGTGGAGACAGTGAACCTGAAGAAATATGTGAAATCGAGGCTTCCTGGTGGGTTTGCAGCTCAGACAATCATTGGTACTGGTCGGCGAAAATGTGCAATTGCTCGTGTTGTACTCCAAGAGGGCACTGGCAAAGTTGTAATCAACTATCGTGATGCCAAGGAATATCTTCAAGGCAATCCATTGTGGTTACAATATGTCAAAGTTCCATTGGTTACTTTGGGATATGAAAGTAACTATGATGTGTTTGTCAAGGCTCATGGTGGCGGCCTTTCTGGTCAGGCTCAAGCTATATCGCTTGGTATTGCTCGAGCATTGCTTAAGGTAAGTGAGGACCACAGAAGACCTCTGAGAAAGGAAGGTCTGTTAACCAGGGACTCCAGAGTTGTTGAGAGGAAGAAACCTGGTTTGAAGAAAGCTCGCAAAGCCCCCCAGTTTTCAAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

210

Amino Acids

22.68

Weight (kDa)

10.7

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 88 - 209 6.2e-43 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74970
fragaria_vesca FvH4_5g26680
malus_domestica MD09G1065100.v1.1 MD17G1058000.v1.1
prunus_persica Prupe.4G129500_v2.0.a1
pyrus_communis pycom111g05500 pycom17g05810
rosa_chinensis RchiOBHm_Chr7g0217571
rosa_laevigata RLG00000002460
rosa_multiflora Rmu_sc0006161.1_g000004
rosa_roxburghii Rroxscaffold_3G00241860
rosa_rugosa Rorug07G0170300
rosa_samantha Rh7AG309900 Rh7BG301100 Rh7CG329100 Rh7DG309600
rosa_wichuraiana Rw7G026290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 2 cut(s) 259, 294
AflII CTTAAG 1 cut(s) 500
AgsI TTSAA 3 cut(s) 353, 592, 621
AjnI CCWGG 3 cut(s) 226, 551, 583
AluBI AGCT 4 cut(s) 173, 242, 470, 599
AluI AGCT 4 cut(s) 173, 242, 470, 599
Alw26I GTCTC 2 cut(s) 163, 182
AlwNI CAGNNNCTG 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 1 cut(s) 514
BaeGI GKGCMC 1 cut(s) 308
BauI CACGAG 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 529
BbvI GCAGC 1 cut(s) 251
BceAI ACGGC 2 cut(s) 21, 123
BciT130I CCWGG 3 cut(s) 228, 553, 585
BcoDI GTCTC 2 cut(s) 163, 182
BfaI CTAG 2 cut(s) 17, 135
BfrI CTTAAG 1 cut(s) 500
BisI GCNGC 2 cut(s) 240, 448
BlsI GCNGC 2 cut(s) 241, 449
Bme1390I CCNGG 3 cut(s) 228, 553, 585
Bme18I GGWCC 1 cut(s) 514
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 514
BmrFI CCNGG 3 cut(s) 228, 553, 585
BmrI ACTGGG 1 cut(s) 607
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 607
BpiI GAAGAC 1 cut(s) 529
BpmI CTGGAG 2 cut(s) 162, 544
BpuEI CTTGAG 1 cut(s) 450
BsaJI CCNNGG 3 cut(s) 146, 339, 552
Bse1I ACTGG 3 cut(s) 265, 313, 613
Bse3DI GCAATG 1 cut(s) 494
BseBI CCWGG 3 cut(s) 228, 553, 585
BseDI CCNNGG 3 cut(s) 146, 339, 552
BseGI GGATG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 2 cut(s) 257, 521
BseNI ACTGG 3 cut(s) 265, 313, 613
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 1 cut(s) 251
BshFI GGCC 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 569
BsmAI GTCTC 2 cut(s) 163, 182
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 1 cut(s) 450
BsoBI CYCGRG 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 1 cut(s) 447
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 2 cut(s) 256, 522
BspTI CTTAAG 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 494
BsrI ACTGG 3 cut(s) 265, 313, 613
BssECI CCNNGG 3 cut(s) 146, 339, 552
BssMI GATC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 3 cut(s) 228, 553, 585
Bst4CI ACNGT 3 cut(s) 82, 169, 193
Bst6I CTCTTC 1 cut(s) 43
BstAFI CTTAAG 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 2 cut(s) 243, 530
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 2 cut(s) 163, 182
BstMBI GATC 1 cut(s) 101
BstMWI GCNNNNNNNGC 3 cut(s) 113, 170, 605
BstNI CCWGG 3 cut(s) 228, 553, 585
BstSCI CCNGG 3 cut(s) 226, 551, 583
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 529
BsuRI GGCC 1 cut(s) 450
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 3 cut(s) 78, 198, 306
Cac8I GCNNGC 1 cut(s) 601
CaiI CAGNNNCTG 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 514
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 2 cut(s) 258, 293
CviAII CATG 1 cut(s) 440
CviQI GTAC 2 cut(s) 258, 293
DdeI CTNAG 2 cut(s) 243, 530
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 489
EcoRII CCWGG 3 cut(s) 226, 551, 583
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 443
FaiI YATR 9 cut(s) 14, 122, 124, 210, 378, 408, 420, 441, 473
FaqI GGGAC 1 cut(s) 569
FatI CATG 1 cut(s) 439
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 240, 448
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 2 cut(s) 240, 448
FspBI CTAG 2 cut(s) 17, 135
GluI GCNGC 2 cut(s) 240, 448
GsuI CTGGAG 2 cut(s) 162, 544
HaeIII GGCC 1 cut(s) 450
Hin1II CATG 1 cut(s) 443
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 1 cut(s) 557
HpaI GTTAAC 1 cut(s) 549
Hpy166II GTNNAC 2 cut(s) 196, 549
Hpy188I TCNGA 2 cut(s) 246, 531
Hpy188III TCNNGA 4 cut(s) 99, 179, 332, 561
Hpy8I GTNNAC 2 cut(s) 196, 549
HpyAV CCTTC 1 cut(s) 533
HpyCH4III ACNGT 3 cut(s) 82, 169, 193
HpyCH4V TGCA 4 cut(s) 65, 116, 239, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 170, 605
HpyF3I CTNAG 2 cut(s) 243, 530
Hsp92II CATG 1 cut(s) 443
KspAI GTTAAC 1 cut(s) 549
Kzo9I GATC 1 cut(s) 101
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 325
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 2 cut(s) 17, 135
MaeIII GTNAC 3 cut(s) 369, 394, 413
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 6 cut(s) 30, 214, 341, 534, 589, 604
MfeI CAATTG 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 1 cut(s) 279
MlyI GAGTC 1 cut(s) 551
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 2 cut(s) 501, 548
MspCI CTTAAG 1 cut(s) 500
MspR9I CCNGG 3 cut(s) 228, 553, 585
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 3 cut(s) 228, 553, 585
MwoI GCNNNNNNNGC 3 cut(s) 113, 170, 605
NdeI CATATG 1 cut(s) 122
NdeII GATC 1 cut(s) 101
NlaIII CATG 1 cut(s) 443
NmeAIII GCCGAG 1 cut(s) 127
PaeR7I CTCGAG 1 cut(s) 489
PdmI GAANNNNTTC 1 cut(s) 348
PkrI GCNGC 2 cut(s) 241, 449
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
Psp6I CCWGG 3 cut(s) 226, 551, 583
PspGI CCWGG 3 cut(s) 226, 551, 583
PspPI GGNCC 1 cut(s) 514
PspXI VCTCGAGB 1 cut(s) 489
PstNI CAGNNNCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 259, 294
RsaNI GTAC 2 cut(s) 258, 293
SaqAI TTAA 2 cut(s) 501, 548
SatI GCNGC 2 cut(s) 240, 448
Sau3AI GATC 1 cut(s) 101
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 3 cut(s) 228, 553, 585
SduI GDGCHC 1 cut(s) 308
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 514
SlaI CTCGAG 1 cut(s) 489
SmlI CTYRAG 3 cut(s) 465, 489, 500
SmoI CTYRAG 3 cut(s) 465, 489, 500
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 447
SspMI CTAG 2 cut(s) 17, 135
StyD4I CCNGG 3 cut(s) 226, 551, 583
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 3 cut(s) 82, 169, 193
TaqI TCGA 2 cut(s) 218, 490
TasI AATT 1 cut(s) 279
TatI WGTACW 1 cut(s) 292
TauI GCSGC 1 cut(s) 450
Tru1I TTAA 2 cut(s) 501, 548
Tru9I TTAA 2 cut(s) 501, 548
TscAI CASTG 3 cut(s) 85, 198, 313
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 42, 75, 423
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 3 cut(s) 85, 198, 313
Vha464I CTTAAG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 489
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 17, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.