MD09G1065100.v1.1

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014326
Physical Location & Seq
Forward (+)
4444826 .. 4446896
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1065100.v1.1.491

Sequence Viewer

Length: 639 bp
ATGGCGGTCTCCATAGCAGCTCTCACATCGTCCCTCTCTTCTCTCTCATTTTCCTCCCACGTAGCTCAGAAGCCCATCATTGCCTCGTTTCCCGGCTCCAAATCAGTGACTTGTTCGCACGTATGCGGAACCGCCACACGTGCCCCTCGTCTGGTGGTGGCTTCCGTAGCGGCAGCTCCTCCTACAGAAGTGGTGGAGACTGAAAACCTCAAGAAATACGTGAAATCAAGGCTTCCCGGCGGTTTTGCAGCTCAGACAATCATCGGGACCGGTCGCCGGAAGTGCGCGATTGCTCGTGTTGTACTCCAGGAGGGCACCGGCAAAGTCATCATCAACTATCGCGACGCCAAGGAATATCTGCAAGGCAACCCGTTGTGGCTACAGTACGTAAGAGTACCGTTGGTTACTTTAGGATACGAAAGTGGATACGACGTGTTTGTGAAGGCTCATGGCGGTGGCCTTTCTGGTCAGGCGCAGGCGATTTCCCTTGGCATTGCCCGAGCTTTGCTAAAGGTCAGTGAAGACCATAGAAGACCTCTCAGAAAGGAAGGGCTGCTGACCAGAGACGCCAGAGTAGTTGAAAGGAAGAAGCCTGGTCTCAAGAAAGCTCGCAAAGCCCCTCAGTTTTCAAAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

213

Amino Acids

22.78

Weight (kDa)

10.42

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 91 - 212 2.3e-42 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74970
fragaria_vesca FvH4_5g26680
malus_domestica MD09G1065100.v1.1 MD17G1058000.v1.1
prunus_persica Prupe.4G129500_v2.0.a1
pyrus_communis pycom111g05500 pycom17g05810
rosa_chinensis RchiOBHm_Chr7g0217571
rosa_laevigata RLG00000002460
rosa_multiflora Rmu_sc0006161.1_g000004
rosa_roxburghii Rroxscaffold_3G00241860
rosa_rugosa Rorug07G0170300
rosa_samantha Rh7AG309900 Rh7BG301100 Rh7CG329100 Rh7DG309600
rosa_wichuraiana Rw7G026290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccII CGCG 2 cut(s) 287, 342
AciI CCGC 6 cut(s) 5, 126, 132, 170, 240, 453
AcvI CACGTG 1 cut(s) 140
AcyI GRCGYC 2 cut(s) 345, 567
AfaI GTAC 3 cut(s) 303, 386, 396
AfiI CCNNNNNNNGG 2 cut(s) 151, 276
AflIII ACRYGT 2 cut(s) 137, 432
AgeI ACCGGT 1 cut(s) 269
AgsI TTSAA 2 cut(s) 581, 630
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 2 cut(s) 306, 592
AluBI AGCT 6 cut(s) 20, 65, 176, 251, 503, 608
AluI AGCT 6 cut(s) 20, 65, 176, 251, 503, 608
Alw26I GTCTC 4 cut(s) 13, 191, 558, 602
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 4 cut(s) 17, 173, 248, 553
AsiGI ACCGGT 1 cut(s) 269
AspLEI GCGC 2 cut(s) 287, 475
AspS9I GGNCC 1 cut(s) 267
AsuC2I CCSGG 2 cut(s) 93, 237
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 1 cut(s) 267
BaeGI GKGCMC 2 cut(s) 145, 317
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BanI GGYRCC 1 cut(s) 314
BauI CACGAG 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 140
BbsI GAAGAC 2 cut(s) 528, 538
BbvI GCAGC 4 cut(s) 29, 185, 260, 540
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 308, 594
BciVI GTATCC 2 cut(s) 407, 419
BcnI CCSGG 2 cut(s) 93, 237
BcoDI GTCTC 4 cut(s) 13, 191, 558, 602
BfmI CTRYAG 2 cut(s) 183, 380
BfuI GTATCC 2 cut(s) 407, 419
BisI GCNGC 5 cut(s) 18, 171, 174, 249, 554
BlsI GCNGC 5 cut(s) 19, 172, 175, 250, 555
Bme1390I CCNGG 4 cut(s) 93, 237, 308, 594
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 498
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 4 cut(s) 97, 130, 268, 316
BmrFI CCNGG 4 cut(s) 93, 237, 308, 594
BpiI GAAGAC 2 cut(s) 528, 538
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 194, 584
BpuMI CCSGG 2 cut(s) 93, 237
BsaAI YACGTR 5 cut(s) 61, 121, 140, 220, 388
BsaHI GRCGYC 2 cut(s) 345, 567
BsaI GGTCTC 2 cut(s) 13, 602
BsaJI CCNNGG 2 cut(s) 348, 487
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 276
Bse118I RCCGGY 2 cut(s) 269, 317
Bse3DI GCAATG 2 cut(s) 78, 492
BseBI CCWGG 2 cut(s) 308, 594
BseDI CCNNGG 2 cut(s) 348, 487
BseLI CCNNNNNNNGG 2 cut(s) 151, 276
BseMI GCAATG 2 cut(s) 78, 492
BseMII CTCAG 4 cut(s) 80, 266, 553, 635
BseRI GAGGAG 1 cut(s) 168
BseSI GKGCMC 2 cut(s) 145, 317
BseXI GCAGC 4 cut(s) 29, 185, 260, 540
Bsh1236I CGCG 2 cut(s) 287, 342
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 459
BshNI GGYRCC 1 cut(s) 314
BshTI ACCGGT 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 5 cut(s) 93, 237, 270, 277, 318
BslFI GGGAC 2 cut(s) 16, 280
BslI CCNNNNNNNGG 2 cut(s) 151, 276
BsmAI GTCTC 4 cut(s) 13, 191, 558, 602
BsmBI CGTCTC 1 cut(s) 558
BsmFI GGGAC 2 cut(s) 16, 280
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 2 cut(s) 13, 602
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 145, 317
Bsp68I TCGCGA 1 cut(s) 342
BspACI CCGC 6 cut(s) 5, 126, 132, 170, 240, 453
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 4 cut(s) 79, 265, 552, 634
BspFNI CGCG 2 cut(s) 287, 342
BspLI GGNNCC 4 cut(s) 97, 130, 268, 316
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 2 cut(s) 13, 602
BsrDI GCAATG 2 cut(s) 78, 492
BsrFI RCCGGY 2 cut(s) 269, 317
BssAI RCCGGY 2 cut(s) 269, 317
BssECI CCNNGG 2 cut(s) 348, 487
BssNI GRCGYC 2 cut(s) 345, 567
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 348, 487
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 308, 594
Bst4CI ACNGT 2 cut(s) 384, 399
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 2 cut(s) 345, 567
BstBAI YACGTR 5 cut(s) 61, 121, 140, 220, 388
BstC8I GCNNGC 2 cut(s) 477, 610
BstDEI CTNAG 4 cut(s) 66, 252, 539, 621
BstFNI CGCG 2 cut(s) 287, 342
BstHHI GCGC 2 cut(s) 287, 475
BstMAI GTCTC 4 cut(s) 13, 191, 558, 602
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 4 cut(s) 140, 167, 282, 614
BstNI CCWGG 2 cut(s) 308, 594
BstSCI CCNGG 4 cut(s) 91, 235, 306, 592
BstSFI CTRYAG 2 cut(s) 183, 380
BstSLI GKGCMC 2 cut(s) 145, 317
BstSNI TACGTA 1 cut(s) 388
BstUI CGCG 2 cut(s) 287, 342
BstV1I GCAGC 4 cut(s) 29, 185, 260, 540
BstV2I GAAGAC 2 cut(s) 528, 538
BsuI GTATCC 2 cut(s) 407, 419
BsuRI GGCC 1 cut(s) 459
BtrI CACGTC 1 cut(s) 433
BtsIMutI CAGTG 2 cut(s) 111, 523
BtuMI TCGCGA 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 477, 610
CfoI GCGC 2 cut(s) 287, 475
Cfr10I RCCGGY 2 cut(s) 269, 317
Cfr13I GGNCC 1 cut(s) 267
CseI GACGC 2 cut(s) 353, 575
Csp6I GTAC 3 cut(s) 302, 385, 395
CspAI ACCGGT 1 cut(s) 269
CviAII CATG 1 cut(s) 449
CviQI GTAC 3 cut(s) 302, 385, 395
DdeI CTNAG 4 cut(s) 66, 252, 539, 621
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco105I TACGTA 1 cut(s) 388
Eco130I CCWWGG 2 cut(s) 348, 487
Eco31I GGTCTC 2 cut(s) 13, 602
Eco47I GGWCC 1 cut(s) 267
Eco72I CACGTG 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 306, 592
EcoT14I CCWWGG 2 cut(s) 348, 487
ErhI CCWWGG 2 cut(s) 348, 487
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 1 cut(s) 452
FaiI YATR 4 cut(s) 14, 124, 450, 528
FaqI GGGAC 2 cut(s) 16, 280
FatI CATG 1 cut(s) 448
Fnu4HI GCNGC 5 cut(s) 18, 171, 174, 249, 554
Fsp4HI GCNGC 5 cut(s) 18, 171, 174, 249, 554
GlaI GCGC 2 cut(s) 286, 474
GluI GCNGC 5 cut(s) 18, 171, 174, 249, 554
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 459
HapII CCGG 5 cut(s) 93, 237, 270, 277, 318
HgaI GACGC 2 cut(s) 353, 575
HhaI GCGC 2 cut(s) 287, 475
Hin1I GRCGYC 2 cut(s) 345, 567
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 2 cut(s) 285, 473
HinP1I GCGC 2 cut(s) 285, 473
HpaII CCGG 5 cut(s) 93, 237, 270, 277, 318
Hpy188I TCNGA 3 cut(s) 69, 255, 542
Hpy188III TCNNGA 4 cut(s) 211, 265, 341, 601
Hpy99I CGWCG 2 cut(s) 347, 434
HpyAV CCTTC 2 cut(s) 436, 542
HpyCH4III ACNGT 2 cut(s) 384, 399
HpyCH4IV ACGT 6 cut(s) 60, 120, 139, 219, 387, 432
HpyCH4V TGCA 2 cut(s) 248, 361
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 167, 282, 614
HpyF3I CTNAG 4 cut(s) 66, 252, 539, 621
HpySE526I ACGT 6 cut(s) 60, 120, 139, 219, 387, 432
Hsp92I GRCGYC 2 cut(s) 345, 567
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 2 cut(s) 285, 473
LmnI GCTCC 2 cut(s) 101, 181
Lsp1109I GCAGC 4 cut(s) 29, 185, 260, 540
MaeII ACGT 6 cut(s) 60, 120, 139, 219, 387, 432
MaeIII GTNAC 2 cut(s) 106, 403
MboII GAAGA 4 cut(s) 30, 533, 543, 598
MhlI GDGCHC 2 cut(s) 145, 317
MnlI CCTC 9 cut(s) 44, 64, 94, 156, 189, 218, 304, 546, 630
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 5 cut(s) 93, 237, 270, 277, 318
MspR9I CCNGG 4 cut(s) 93, 237, 308, 594
MvaI CCWGG 2 cut(s) 308, 594
MvnI CGCG 2 cut(s) 287, 342
MwoI GCNNNNNNNGC 4 cut(s) 140, 167, 282, 614
NciI CCSGG 2 cut(s) 93, 237
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 4 cut(s) 97, 130, 268, 316
NmuCI GTSAC 1 cut(s) 106
NruI TCGCGA 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PfoI TCCNGGA 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 269
PkrI GCNGC 5 cut(s) 19, 172, 175, 250, 555
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
Ppu21I YACGTR 5 cut(s) 61, 121, 140, 220, 388
Psp6I CCWGG 2 cut(s) 306, 592
PspCI CACGTG 1 cut(s) 140
PspGI CCWGG 2 cut(s) 306, 592
PspN4I GGNNCC 4 cut(s) 97, 130, 268, 316
PspPI GGNCC 1 cut(s) 267
RruI TCGCGA 1 cut(s) 342
RsaI GTAC 3 cut(s) 303, 386, 396
RsaNI GTAC 3 cut(s) 302, 385, 395
RseI CAYNNNNRTG 1 cut(s) 453
SatI GCNGC 5 cut(s) 18, 171, 174, 249, 554
Sau96I GGNCC 1 cut(s) 267
ScrFI CCNGG 4 cut(s) 93, 237, 308, 594
SduI GDGCHC 2 cut(s) 145, 317
SfcI CTRYAG 2 cut(s) 183, 380
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 209, 599
SmoI CTYRAG 2 cut(s) 209, 599
SnaBI TACGTA 1 cut(s) 388
SsiI CCGC 6 cut(s) 5, 126, 132, 170, 240, 453
StyD4I CCNGG 4 cut(s) 91, 235, 306, 592
StyI CCWWGG 2 cut(s) 348, 487
TaaI ACNGT 2 cut(s) 384, 399
TaiI ACGT 6 cut(s) 63, 123, 142, 222, 390, 435
TatI WGTACW 1 cut(s) 301
TauI GCSGC 1 cut(s) 173
TscAI CASTG 2 cut(s) 111, 523
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 4 cut(s) 17, 173, 248, 553
Tsp45I GTSAC 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 2 cut(s) 111, 523
VpaK11BI GGWCC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.