Prupe.4G129500_v2.0.a1

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014326
Physical Location & Seq
Reverse (-)
7141288 .. 7143042
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G129500.1

Sequence Viewer

Length: 624 bp
ATGGCGGCTCCCATACTAGCTCTCACTTCGTCACTCTCTTCTCTCTCATTTTCGTCTCACGTAGCTCAGAACCCTAGCGTCGTCTCATTTCCCAAATCCAGATCAGTGTCGTGTGGAACCCTTACGAGTACCCCTCCGCCGATCATCGCCTCTGCCTCGGTAGCTCCCCCAGAAGCTCTGCAGTCTGCGGACCTCAAAAAATACGTGAAATCGAGGCTTCCCGGTGGCTTTGCAGCTCAGACAATCATCGGCACTGGTCGTCGGAAATGCGCAATCGCTCGCGTTGTGCTCCAGGAGGGCACTGGAAAAATCATAATAAACTATCGGGATGCCAAGGAGTATCTTCAAGGCAACCCACTGTGGCTGCAGTATCTCAAAGTACCGTTGGGTACTTTGGGATACGAAAGTAGCTATGATGTCTTTGTGAAGGCTCACGGCGGTGGGCTTTCTGGCCAGGCTCAGGCTATATCCCTCGGCATTGCTCGAGCACTGCTGAAGGTGAGTGAGGACCACAGAGCACCTCTGAGAAAGGAGGGGCTGCTGACCAGGGACTCCAGAGTGGTTGAAAGGAAGAAGGCGGGTCTCAAGAAAGCTCGCAAAGCTCCACAGTTTTCCAAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

208

Amino Acids

22.11

Weight (kDa)

10.34

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74970
fragaria_vesca FvH4_5g26680
malus_domestica MD09G1065100.v1.1 MD17G1058000.v1.1
prunus_persica Prupe.4G129500_v2.0.a1
pyrus_communis pycom111g05500 pycom17g05810
rosa_chinensis RchiOBHm_Chr7g0217571
rosa_laevigata RLG00000002460
rosa_multiflora Rmu_sc0006161.1_g000004
rosa_roxburghii Rroxscaffold_3G00241860
rosa_rugosa Rorug07G0170300
rosa_samantha Rh7AG309900 Rh7BG301100 Rh7CG329100 Rh7DG309600
rosa_wichuraiana Rw7G026290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 271
AccII CGCG 1 cut(s) 282
AciI CCGC 5 cut(s) 5, 137, 188, 438, 578
AclI AACGTT 1 cut(s) 619
AcoI YGGCCR 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 3 cut(s) 130, 381, 391
AfiI CCNNNNNNNGG 1 cut(s) 460
AgsI TTSAA 2 cut(s) 347, 566
AjnI CCWGG 3 cut(s) 291, 453, 545
AleI CACNNNNGTG 1 cut(s) 438
AluBI AGCT 8 cut(s) 20, 65, 164, 176, 236, 411, 593, 602
AluI AGCT 8 cut(s) 20, 65, 164, 176, 236, 411, 593, 602
Alw21I GWGCWC 3 cut(s) 291, 490, 520
Alw26I GTCTC 3 cut(s) 60, 88, 587
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 1 cut(s) 451
ApeKI GCWGC 3 cut(s) 233, 364, 538
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 190, 508
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 511
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 2 cut(s) 190, 508
BaeGI GKGCMC 1 cut(s) 302
BaeI ACNNNNGTAYC 2 cut(s) 391, 424
BalI TGGCCA 1 cut(s) 453
Bbv12I GWGCWC 3 cut(s) 291, 490, 520
BbvI GCAGC 3 cut(s) 245, 351, 525
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 3 cut(s) 293, 455, 547
BciVI GTATCC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 3 cut(s) 60, 88, 587
BfaI CTAG 2 cut(s) 17, 75
BfmI CTRYAG 2 cut(s) 179, 365
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 4 cut(s) 6, 234, 365, 539
BlsI GCNGC 4 cut(s) 7, 235, 366, 540
Bme1390I CCNGG 4 cut(s) 222, 293, 455, 547
Bme18I GGWCC 2 cut(s) 190, 508
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 2 cut(s) 190, 508
BmiI GGNNCC 2 cut(s) 9, 118
BmrFI CCNGG 4 cut(s) 222, 293, 455, 547
BmsI GCATC 1 cut(s) 319
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BpmI CTGGAG 2 cut(s) 275, 538
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 222
BsaAI YACGTR 2 cut(s) 61, 205
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 4 cut(s) 156, 333, 472, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse1I ACTGG 2 cut(s) 259, 307
Bse3DI GCAATG 1 cut(s) 477
BseBI CCWGG 3 cut(s) 293, 455, 547
BseDI CCNNGG 4 cut(s) 156, 333, 472, 546
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 4 cut(s) 80, 251, 473, 515
BseNI ACTGG 2 cut(s) 259, 307
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 3 cut(s) 245, 351, 525
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 453
BsiHKAI GWGCWC 3 cut(s) 291, 490, 520
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 3 cut(s) 60, 88, 587
BsmBI CGTCTC 2 cut(s) 60, 88
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 1 cut(s) 453
Bso31I GGTCTC 1 cut(s) 587
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 4 cut(s) 291, 302, 490, 520
Bsp143I GATC 2 cut(s) 101, 141
BspACI CCGC 5 cut(s) 5, 137, 188, 438, 578
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 4 cut(s) 79, 250, 472, 516
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 9, 118
BspMAI CTGCAG 2 cut(s) 183, 369
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 477
BsrI ACTGG 2 cut(s) 259, 307
BssECI CCNNGG 4 cut(s) 156, 333, 472, 546
BssMI GATC 2 cut(s) 101, 141
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 3 cut(s) 293, 455, 547
Bst4CI ACNGT 3 cut(s) 360, 384, 609
Bst6I CTCTTC 1 cut(s) 43
BstBAI YACGTR 2 cut(s) 61, 205
BstC8I GCNNGC 2 cut(s) 280, 595
BstDEI CTNAG 4 cut(s) 66, 237, 459, 524
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 2 cut(s) 104, 144
BstMAI GTCTC 3 cut(s) 60, 88, 587
BstMBI GATC 2 cut(s) 101, 141
BstMWI GCNNNNNNNGC 2 cut(s) 161, 599
BstNI CCWGG 3 cut(s) 293, 455, 547
BstSCI CCNGG 4 cut(s) 220, 291, 453, 545
BstSFI CTRYAG 2 cut(s) 179, 365
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 245, 351, 525
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 1 cut(s) 453
BtgZI GCGATG 1 cut(s) 130
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 5 cut(s) 111, 252, 300, 356, 488
Cac8I GCNNGC 2 cut(s) 280, 595
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 190, 508
CseI GACGC 1 cut(s) 67
Csp6I GTAC 3 cut(s) 129, 380, 390
CviQI GTAC 3 cut(s) 129, 380, 390
DdeI CTNAG 4 cut(s) 66, 237, 459, 524
DpnI GATC 2 cut(s) 103, 143
DpnII GATC 2 cut(s) 101, 141
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 2 cut(s) 190, 508
Eco57I CTGAAG 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 483
EcoRII CCWGG 3 cut(s) 291, 453, 545
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 2 cut(s) 60, 88
FaiI YATR 4 cut(s) 14, 314, 414, 467
FaqI GGGAC 1 cut(s) 563
FauI CCCGC 1 cut(s) 571
Fnu4HI GCNGC 4 cut(s) 6, 234, 365, 539
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 4 cut(s) 6, 234, 365, 539
FspBI CTAG 2 cut(s) 17, 75
FspI TGCGCA 1 cut(s) 271
GlaI GCGC 1 cut(s) 271
GluI GCNGC 4 cut(s) 6, 234, 365, 539
GsuI CTGGAG 2 cut(s) 275, 538
HaeIII GGCC 1 cut(s) 453
HapII CCGG 1 cut(s) 222
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 272
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HinfI GANTC 1 cut(s) 551
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 511
Hpy188I TCNGA 4 cut(s) 69, 240, 264, 525
Hpy188III TCNNGA 4 cut(s) 99, 326, 555, 586
Hpy99I CGWCG 2 cut(s) 83, 264
HpyAV CCTTC 3 cut(s) 421, 490, 568
HpyCH4III ACNGT 3 cut(s) 360, 384, 609
HpyCH4IV ACGT 3 cut(s) 60, 204, 619
HpyCH4V TGCA 3 cut(s) 181, 233, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 599
HpyF3I CTNAG 4 cut(s) 66, 237, 459, 524
HpySE526I ACGT 3 cut(s) 60, 204, 619
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 2 cut(s) 101, 141
LmnI GCTCC 4 cut(s) 13, 169, 294, 607
Lsp1109I GCAGC 3 cut(s) 245, 351, 525
LweI GCATC 1 cut(s) 319
MaeI CTAG 2 cut(s) 17, 75
MaeII ACGT 3 cut(s) 60, 204, 619
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 103, 143
MboI GATC 2 cut(s) 101, 141
MboII GAAGA 3 cut(s) 30, 335, 583
MhlI GDGCHC 4 cut(s) 291, 302, 490, 520
MlsI TGGCCA 1 cut(s) 453
MluNI TGGCCA 1 cut(s) 453
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 1 cut(s) 242
Mox20I TGGCCA 1 cut(s) 453
MscI TGGCCA 1 cut(s) 453
MslI CAYNNNNRTG 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 453
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 4 cut(s) 222, 293, 455, 547
MvaI CCWGG 3 cut(s) 293, 455, 547
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 161, 599
NciI CCSGG 1 cut(s) 222
NdeII GATC 2 cut(s) 101, 141
NlaIV GGNNCC 2 cut(s) 9, 118
NmeAIII GCCGAG 1 cut(s) 453
NmuCI GTSAC 1 cut(s) 30
NsbI TGCGCA 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 438
PaeR7I CTCGAG 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 4 cut(s) 7, 235, 366, 540
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
Ppu21I YACGTR 2 cut(s) 61, 205
Psp1406I AACGTT 1 cut(s) 619
Psp6I CCWGG 3 cut(s) 291, 453, 545
PspGI CCWGG 3 cut(s) 291, 453, 545
PspN4I GGNNCC 2 cut(s) 9, 118
PspPI GGNCC 2 cut(s) 190, 508
PspXI VCTCGAGB 1 cut(s) 483
PstI CTGCAG 2 cut(s) 183, 369
RsaI GTAC 3 cut(s) 130, 381, 391
RsaNI GTAC 3 cut(s) 129, 380, 390
RseI CAYNNNNRTG 1 cut(s) 438
SatI GCNGC 4 cut(s) 6, 234, 365, 539
Sau3AI GATC 2 cut(s) 101, 141
Sau96I GGNCC 2 cut(s) 190, 508
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 4 cut(s) 222, 293, 455, 547
SduI GDGCHC 4 cut(s) 291, 302, 490, 520
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 2 cut(s) 179, 365
Sfr274I CTCGAG 1 cut(s) 483
SinI GGWCC 2 cut(s) 190, 508
SlaI CTCGAG 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 483, 584
SmoI CTYRAG 2 cut(s) 483, 584
SsiI CCGC 5 cut(s) 5, 137, 188, 438, 578
SspMI CTAG 2 cut(s) 17, 75
StyD4I CCNGG 4 cut(s) 220, 291, 453, 545
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 3 cut(s) 360, 384, 609
TaiI ACGT 3 cut(s) 63, 207, 622
TaqI TCGA 2 cut(s) 212, 484
TauI GCSGC 1 cut(s) 8
TscAI CASTG 5 cut(s) 111, 259, 307, 363, 495
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 3 cut(s) 233, 364, 538
Tsp45I GTSAC 1 cut(s) 30
TspRI CASTG 5 cut(s) 111, 259, 307, 363, 495
VpaK11BI GGWCC 2 cut(s) 190, 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 483
XspI CTAG 2 cut(s) 17, 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.