pycom111g05500

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0014326
Physical Location & Seq
Forward (+)
3516096 .. 3518924
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g05500.2

Sequence Viewer

Length: 978 bp
ATGCGTGCATTTGTTGTTGAGTTCATGCCTGTTTTAGTTCATTCTTTTGTTTTCTTGATGATGCTTTCGGCGAACGGCTTTGGTTACCGTCACGCCTTTGTTTTATGTTCTTGTCTTGACATTGATGGAACTGCATTTCATTTTCCAAGCAAACGTCGCTTAGGCCGATTGACTAGGTTGCTACTCGTGCAATTTTACCAAATAATAAAAACCCAAACTTTCGTTATCCTCTCAATCCCCCCATTTTCCGAACGTTATCCCCTTTCATCTTCATCATCCGCCCACCAGCTGCTCGGTGCTGGCGGCAAAATCCAAATCCGCAGAAACCCTAGGGAAAAAATGGCGGTCTCCATAACAGCTCTCACATCGTCCCTCTCTTCTCTCTCATTTTCCTCCCACGTAGCTCAGAAGCCTAGCATTGCCTCGTTTCCCGGCTCCAAATCAGTGACTTTTTCGAAAGTGTGCGGAACCGCCACACCTTCCCCTCGTCTGGTGGTGGCTTCCGTCGCGGCGGCTCCTCCTACAGAAGTGCTGGAGACTGAAAACCTCAAGAAATACGTGAAATCGAGGCTTCCCGGCGGTTTTGCAGCTCAGACAATCATCGGGACTGGTCGCCGGAAGTGCGCGATTGCTCGTGTTGTACTCCAGGAGGGCACCGGCAAAGTCATCATCAACTATCGCGACGCCAAGGAATATCTGCAAGGCAACCCGTTGTGGCTACAGTACGTAAGAGTACCGTTGGTTACTTTAGGATATGAAAGTGGATACGACGTGTTTGTGAAGGCTCATGGCGGTGGCCTTTCTGGTCAGGCGCAGGCGATTTCCCTTGGCATTGCTCGAGCTTTGCTAAAGGTCAGCGAAGACCATAGAAGACCTCTCAGAAAGGAAGGGCTGCTGACTAGAGACGCCAGAGTAGTTGAAAGGAAGAAGCCTGGTCTCAAGAAAGCTCGCAAAGCCCCTCAGTTTTCAAAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

326

Amino Acids

35.68

Weight (kDa)

10.55

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74970
fragaria_vesca FvH4_5g26680
malus_domestica MD09G1065100.v1.1 MD17G1058000.v1.1
prunus_persica Prupe.4G129500_v2.0.a1
pyrus_communis pycom111g05500 pycom17g05810
rosa_chinensis RchiOBHm_Chr7g0217571
rosa_laevigata RLG00000002460
rosa_multiflora Rmu_sc0006161.1_g000004
rosa_roxburghii Rroxscaffold_3G00241860
rosa_rugosa Rorug07G0170300
rosa_samantha Rh7AG309900 Rh7BG301100 Rh7CG329100 Rh7DG309600
rosa_wichuraiana Rw7G026290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 653
AccII CGCG 3 cut(s) 509, 626, 681
AclI AACGTT 1 cut(s) 253
AcyI GRCGYC 2 cut(s) 684, 906
AfaI GTAC 3 cut(s) 642, 725, 735
AfiI CCNNNNNNNGG 1 cut(s) 490
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 2 cut(s) 920, 969
AjiI CACGTC 1 cut(s) 772
AjnI CCWGG 2 cut(s) 645, 931
AluBI AGCT 6 cut(s) 289, 359, 404, 590, 842, 947
AluI AGCT 6 cut(s) 289, 359, 404, 590, 842, 947
Alw26I GTCTC 4 cut(s) 352, 530, 897, 941
Ama87I CYCGRG 1 cut(s) 837
AoxI GGCC 2 cut(s) 163, 796
ApeKI GCWGC 3 cut(s) 289, 587, 892
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 2 cut(s) 626, 814
AsuC2I CCSGG 2 cut(s) 432, 576
AsuII TTCGAA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 837
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 656
BanI GGYRCC 1 cut(s) 653
BauI CACGAG 2 cut(s) 185, 633
BbsI GAAGAC 2 cut(s) 867, 877
BbvI GCAGC 3 cut(s) 276, 599, 879
BccI CCATC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 2 cut(s) 647, 933
BciVI GTATCC 1 cut(s) 758
BcnI CCSGG 2 cut(s) 432, 576
BcoDI GTCTC 4 cut(s) 352, 530, 897, 941
BfaI CTAG 4 cut(s) 174, 330, 414, 900
BfmI CTRYAG 2 cut(s) 522, 719
BfuI GTATCC 1 cut(s) 758
BisI GCNGC 6 cut(s) 290, 304, 510, 513, 588, 893
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 6 cut(s) 291, 305, 511, 514, 589, 894
Bme1390I CCNGG 4 cut(s) 432, 576, 647, 933
BmeT110I CYCGRG 1 cut(s) 837
BmgBI CACGTC 1 cut(s) 772
BmiI GGNNCC 4 cut(s) 436, 469, 516, 655
BmrFI CCNGG 4 cut(s) 432, 576, 647, 933
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 2 cut(s) 867, 877
BpmI CTGGAG 2 cut(s) 554, 629
Bpu10I CCTNAGC 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 2 cut(s) 533, 923
BpuMI CCSGG 2 cut(s) 432, 576
BsaAI YACGTR 3 cut(s) 400, 559, 727
BsaHI GRCGYC 2 cut(s) 684, 906
BsaI GGTCTC 2 cut(s) 352, 941
BsaJI CCNNGG 3 cut(s) 329, 687, 826
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 1 cut(s) 613
Bse3DI GCAATG 2 cut(s) 417, 831
BseBI CCWGG 2 cut(s) 647, 933
BseDI CCNNGG 3 cut(s) 329, 687, 826
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMI GCAATG 2 cut(s) 417, 831
BseMII CTCAG 4 cut(s) 419, 605, 892, 974
BseNI ACTGG 1 cut(s) 613
BseRI GAGGAG 1 cut(s) 507
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 3 cut(s) 276, 599, 879
Bsh1236I CGCG 3 cut(s) 509, 626, 681
BshFI GGCC 2 cut(s) 165, 798
BshNI GGYRCC 1 cut(s) 653
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 4 cut(s) 432, 576, 616, 657
BslFI GGGAC 2 cut(s) 355, 619
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 4 cut(s) 352, 530, 897, 941
BsmBI CGTCTC 1 cut(s) 897
BsmFI GGGAC 2 cut(s) 355, 619
BsnI GGCC 2 cut(s) 165, 798
Bso31I GGTCTC 2 cut(s) 352, 941
BsoBI CYCGRG 1 cut(s) 837
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 656
Bsp68I TCGCGA 1 cut(s) 681
BspANI GGCC 2 cut(s) 165, 798
BspCNI CTCAG 4 cut(s) 418, 604, 891, 973
BspFNI CGCG 3 cut(s) 509, 626, 681
BspLI GGNNCC 4 cut(s) 436, 469, 516, 655
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 653
BspTNI GGTCTC 2 cut(s) 352, 941
BsrDI GCAATG 2 cut(s) 417, 831
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 1 cut(s) 613
BssAI RCCGGY 1 cut(s) 656
BssECI CCNNGG 3 cut(s) 329, 687, 826
BssNI GRCGYC 2 cut(s) 684, 906
BssSI CACGAG 2 cut(s) 185, 633
BssT1I CCWWGG 3 cut(s) 329, 687, 826
Bst2BI CACGAG 2 cut(s) 185, 633
Bst2UI CCWGG 2 cut(s) 647, 933
Bst4CI ACNGT 3 cut(s) 89, 723, 738
Bst6I CTCTTC 1 cut(s) 382
BstACI GRCGYC 2 cut(s) 684, 906
BstBAI YACGTR 3 cut(s) 400, 559, 727
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 4 cut(s) 6, 301, 816, 949
BstDEI CTNAG 5 cut(s) 160, 405, 591, 878, 960
BstEII GGTNACC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 275
BstFNI CGCG 3 cut(s) 509, 626, 681
BstHHI GCGC 2 cut(s) 626, 814
BstMAI GTCTC 4 cut(s) 352, 530, 897, 941
BstMWI GCNNNNNNNGC 5 cut(s) 156, 187, 506, 621, 953
BstNI CCWGG 2 cut(s) 647, 933
BstPI GGTNACC 1 cut(s) 83
BstSCI CCNGG 4 cut(s) 430, 574, 645, 931
BstSFI CTRYAG 2 cut(s) 522, 719
BstSLI GKGCMC 1 cut(s) 656
BstSNI TACGTA 1 cut(s) 727
BstUI CGCG 3 cut(s) 509, 626, 681
BstV1I GCAGC 3 cut(s) 276, 599, 879
BstV2I GAAGAC 2 cut(s) 867, 877
BsuI GTATCC 1 cut(s) 758
BsuRI GGCC 2 cut(s) 165, 798
BtrI CACGTC 1 cut(s) 772
BtsCI GGATG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 450
BtuMI TCGCGA 1 cut(s) 681
Cac8I GCNNGC 4 cut(s) 6, 301, 816, 949
CfoI GCGC 2 cut(s) 626, 814
Cfr10I RCCGGY 1 cut(s) 656
CseI GACGC 2 cut(s) 692, 914
Csp6I GTAC 3 cut(s) 641, 724, 734
CviAII CATG 2 cut(s) 25, 788
CviQI GTAC 3 cut(s) 641, 724, 734
DdeI CTNAG 5 cut(s) 160, 405, 591, 878, 960
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
EciI GGCGGA 1 cut(s) 268
Eco105I TACGTA 1 cut(s) 727
Eco130I CCWWGG 3 cut(s) 329, 687, 826
Eco31I GGTCTC 2 cut(s) 352, 941
Eco88I CYCGRG 1 cut(s) 837
Eco91I GGTNACC 1 cut(s) 83
EcoO65I GGTNACC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 645, 931
EcoT14I CCWWGG 3 cut(s) 329, 687, 826
ErhI CCWWGG 3 cut(s) 329, 687, 826
Esp3I CGTCTC 1 cut(s) 897
FaeI CATG 2 cut(s) 28, 791
FaiI YATR 6 cut(s) 26, 106, 353, 756, 789, 867
FaqI GGGAC 2 cut(s) 355, 619
FatI CATG 2 cut(s) 24, 787
Fnu4HI GCNGC 6 cut(s) 290, 304, 510, 513, 588, 893
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 6 cut(s) 290, 304, 510, 513, 588, 893
FspBI CTAG 4 cut(s) 174, 330, 414, 900
GlaI GCGC 2 cut(s) 625, 813
GluI GCNGC 6 cut(s) 290, 304, 510, 513, 588, 893
GsuI CTGGAG 2 cut(s) 554, 629
HaeIII GGCC 2 cut(s) 165, 798
HapII CCGG 4 cut(s) 432, 576, 616, 657
HgaI GACGC 2 cut(s) 692, 914
HhaI GCGC 2 cut(s) 626, 814
Hin1I GRCGYC 2 cut(s) 684, 906
Hin1II CATG 2 cut(s) 28, 791
Hin6I GCGC 2 cut(s) 624, 812
HinP1I GCGC 2 cut(s) 624, 812
HpaII CCGG 4 cut(s) 432, 576, 616, 657
Hpy188I TCNGA 4 cut(s) 250, 408, 594, 881
Hpy188III TCNNGA 6 cut(s) 55, 116, 550, 604, 680, 940
Hpy99I CGWCG 4 cut(s) 159, 509, 686, 773
HpyAV CCTTC 3 cut(s) 489, 775, 881
HpyCH4III ACNGT 3 cut(s) 89, 723, 738
HpyCH4IV ACGT 6 cut(s) 154, 253, 399, 558, 726, 771
HpyCH4V TGCA 5 cut(s) 8, 134, 190, 587, 700
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 187, 506, 621, 953
HpyF3I CTNAG 5 cut(s) 160, 405, 591, 878, 960
HpySE526I ACGT 6 cut(s) 154, 253, 399, 558, 726, 771
Hsp92I GRCGYC 2 cut(s) 684, 906
Hsp92II CATG 2 cut(s) 28, 791
HspAI GCGC 2 cut(s) 624, 812
LmnI GCTCC 2 cut(s) 440, 520
Lsp1109I GCAGC 3 cut(s) 276, 599, 879
LweI GCATC 1 cut(s) 51
MaeI CTAG 4 cut(s) 174, 330, 414, 900
MaeII ACGT 6 cut(s) 154, 253, 399, 558, 726, 771
MaeIII GTNAC 4 cut(s) 83, 89, 445, 742
MboII GAAGA 5 cut(s) 261, 369, 872, 882, 937
MhlI GDGCHC 1 cut(s) 656
MluCI AATT 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 4 cut(s) 432, 576, 616, 657
MspR9I CCNGG 4 cut(s) 432, 576, 647, 933
MvaI CCWGG 2 cut(s) 647, 933
MvnI CGCG 3 cut(s) 509, 626, 681
MwoI GCNNNNNNNGC 5 cut(s) 156, 187, 506, 621, 953
NciI CCSGG 2 cut(s) 432, 576
NlaIII CATG 2 cut(s) 28, 791
NlaIV GGNNCC 4 cut(s) 436, 469, 516, 655
NmuCI GTSAC 2 cut(s) 89, 445
NruI TCGCGA 1 cut(s) 681
NspV TTCGAA 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 645
PkrI GCNGC 6 cut(s) 291, 305, 511, 514, 589, 894
Ppu21I YACGTR 3 cut(s) 400, 559, 727
Psp1406I AACGTT 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 645, 931
PspEI GGTNACC 1 cut(s) 83
PspGI CCWGG 2 cut(s) 645, 931
PspN4I GGNNCC 4 cut(s) 436, 469, 516, 655
PspXI VCTCGAGB 1 cut(s) 837
PvuII CAGCTG 1 cut(s) 289
RruI TCGCGA 1 cut(s) 681
RsaI GTAC 3 cut(s) 642, 725, 735
RsaNI GTAC 3 cut(s) 641, 724, 734
RseI CAYNNNNRTG 1 cut(s) 792
SatI GCNGC 6 cut(s) 290, 304, 510, 513, 588, 893
ScrFI CCNGG 4 cut(s) 432, 576, 647, 933
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 1 cut(s) 51
SfcI CTRYAG 2 cut(s) 522, 719
Sfr274I CTCGAG 1 cut(s) 837
SfuI TTCGAA 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 837
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 3 cut(s) 548, 837, 938
SmoI CTYRAG 3 cut(s) 548, 837, 938
SnaBI TACGTA 1 cut(s) 727
Sse9I AATT 1 cut(s) 191
SspMI CTAG 4 cut(s) 174, 330, 414, 900
StyD4I CCNGG 4 cut(s) 430, 574, 645, 931
StyI CCWWGG 3 cut(s) 329, 687, 826
TaaI ACNGT 3 cut(s) 89, 723, 738
TaiI ACGT 6 cut(s) 157, 256, 402, 561, 729, 774
TaqI TCGA 3 cut(s) 455, 566, 838
TasI AATT 1 cut(s) 191
TatI WGTACW 1 cut(s) 640
TauI GCSGC 3 cut(s) 306, 512, 515
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 2 cut(s) 89, 445
TseI GCWGC 3 cut(s) 289, 587, 892
Tsp45I GTSAC 2 cut(s) 89, 445
TspDTI ATGAA 6 cut(s) 13, 29, 128, 255, 261, 771
TspGWI ACGGA 1 cut(s) 493
TspRI CASTG 1 cut(s) 450
XhoI CTCGAG 1 cut(s) 837
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 4 cut(s) 174, 330, 414, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.