Rorug07G0170300

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006203
Physical Location & Seq
Reverse (-)
13825117 .. 13830680
5564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0170300.1

Sequence Viewer

Length: 879 bp
ATGCTCATTCAAGCTCATTGCTCCACACTCACTCCTGTTTCTCTCACAAACACTACCCGCCAATTCCCTATCATCTCCCGCCCTGCCCCTTTTAATGTGGATCGATCGAATGGAGCTGCGAGTTCGTGGTTGGGGAGGAAAAAGAAGAATCGGGGAGTGATAGTTTCGGCTTCTGAGGAGCAGAGCTCGAGCCCCAATTTGCAGAAGAGAAGAAAGATCATCGAACACATATGTCTGCTCAAATCAAAGGAGGATTTATCTGATGAGGAAGAGAAGGATATGCTGGATTATCTGTATACAACCCAGTATCAAATGAGAGGCATTGTTGCAATATCATTAGGACGTATCGGTAATCAAAATCCCAACAAGTATAGCTACGCTTTCTACCTGCGTTTCCAGAGAAAAGAAGACCTTGTAAAGTTTTACCAGCATCCTTTCTACTTGGGAGTTCTCAAGGATCATGTATCGCCTTACTGCCATGAATTGCTAAATGTAGATTATGAATCTGAAGTAGAAGATGATATCCTTCCTATATTTCGAAAAGGAGAGGAATTCAACTTTGGTGTGGAGTTTGTGCTTCTGATTTCCTTTGTCGATAATGCATCTGATCATGTGGAAGATGCATTGGTTTCTTTGGAAGGGCTGCTGATGGGATTCCAATCCTTGATTGTCCAATCTACTCAAGGTGTGAATTTTAACCCCAGCAGCAAGGAGTATACACATGGAGTAGTGATTAGATTTCGGTCGTTTGACGCTTTTGAGATATTTTTCGGAAGCTCAGAATACAAAGACTTATGGAAGTCAAAGTTCGAGAAAATCACTCAGAAAACACTTTCTGTCCATATTCTAATTCAACCAGTGGGTAGTGAGATCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

292

Amino Acids

33.55

Weight (kDa)

6.09

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 74 - 168 5.1e-11 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 396
AccI GTMKAC 2 cut(s) 296, 716
AciI CCGC 2 cut(s) 58, 79
AclWI GGATC 2 cut(s) 108, 465
AcsI RAATTY 2 cut(s) 551, 691
AcuI CTGAAG 1 cut(s) 528
AgsI TTSAA 3 cut(s) 11, 556, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 5 cut(s) 14, 116, 186, 375, 777
AluI AGCT 5 cut(s) 14, 116, 186, 375, 777
Alw21I GWGCWC 1 cut(s) 188
AlwI GGATC 2 cut(s) 108, 465
Ama87I CYCGRG 1 cut(s) 187
ApeKI GCWGC 3 cut(s) 116, 643, 705
ApoI RAATTY 2 cut(s) 551, 691
AsuII TTCGAA 1 cut(s) 538
AvaI CYCGRG 1 cut(s) 187
BanII GRGCYC 2 cut(s) 188, 194
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 3 cut(s) 103, 630, 717
BccI CCATC 1 cut(s) 643
BclI TGATCA 1 cut(s) 607
BfuAI ACCTGC 1 cut(s) 396
BisI GCNGC 3 cut(s) 117, 644, 706
BlsI GCNGC 3 cut(s) 118, 645, 707
BmeT110I CYCGRG 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 3 cut(s) 439, 610, 611
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu14I TTCGAA 1 cut(s) 538
BpuEI CTTGAG 2 cut(s) 437, 666
Bsa29I ATCGAT 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 658
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 147, 177
Bse1I ACTGG 2 cut(s) 304, 857
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 658
BseCI ATCGAT 1 cut(s) 103
BseGI GGATG 1 cut(s) 430
BseJI GATNNNNATC 1 cut(s) 658
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 165, 792, 836
BseNI ACTGG 2 cut(s) 304, 857
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 103, 630, 717
BseYI CCCAGC 1 cut(s) 701
Bsh1285I CGRYCG 2 cut(s) 107, 746
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 2 cut(s) 107, 746
BsiHKAI GWGCWC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 187
Bsp119I TTCGAA 1 cut(s) 538
Bsp1286I GDGCHC 2 cut(s) 188, 194
Bsp143I GATC 6 cut(s) 100, 104, 216, 457, 607, 870
BspACI CCGC 2 cut(s) 58, 79
BspCNI CTCAG 3 cut(s) 166, 791, 835
BspDI ATCGAT 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 396
BspPI GGATC 2 cut(s) 108, 465
BspT104I TTCGAA 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 2 cut(s) 304, 857
BssMI GATC 6 cut(s) 100, 104, 216, 457, 607, 870
BssNAI GTATAC 2 cut(s) 297, 717
Bst1107I GTATAC 2 cut(s) 297, 717
Bst6I CTCTTC 2 cut(s) 200, 264
BstBI TTCGAA 1 cut(s) 538
BstDEI CTNAG 3 cut(s) 174, 778, 822
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 6 cut(s) 103, 107, 219, 460, 610, 873
BstMBI GATC 6 cut(s) 100, 104, 216, 457, 607, 870
BstMCI CGRYCG 2 cut(s) 107, 746
BstV1I GCAGC 3 cut(s) 103, 630, 717
BstV2I GAAGAC 1 cut(s) 414
BstZ17I GTATAC 2 cut(s) 297, 717
Bsu15I ATCGAT 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 103
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 864
BveI ACCTGC 1 cut(s) 396
ClaI ATCGAT 1 cut(s) 103
CseI GACGC 1 cut(s) 761
CviAII CATG 5 cut(s) 461, 479, 611, 722, 874
CviJI RGCY 8 cut(s) 14, 116, 170, 186, 192, 375, 643, 777
CviKI_1 RGCY 8 cut(s) 14, 116, 170, 186, 192, 375, 643, 777
DdeI CTNAG 3 cut(s) 174, 778, 822
DpnI GATC 6 cut(s) 102, 106, 218, 459, 609, 872
DpnII GATC 6 cut(s) 100, 104, 216, 457, 607, 870
Eam1104I CTCTTC 2 cut(s) 200, 264
EarI CTCTTC 2 cut(s) 200, 264
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 2 cut(s) 188, 194
Eco32I GATATC 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 528
Eco88I CYCGRG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 551
EcoRV GATATC 1 cut(s) 523
EcoT22I ATGCAT 2 cut(s) 604, 625
EcoT38I GRGCYC 2 cut(s) 188, 194
FaeI CATG 5 cut(s) 464, 482, 614, 725, 877
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 5 cut(s) 460, 478, 610, 721, 873
FauI CCCGC 2 cut(s) 65, 86
FauNDI CATATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 607
FblI GTMKAC 2 cut(s) 296, 716
Fnu4HI GCNGC 3 cut(s) 117, 644, 706
FokI GGATG 1 cut(s) 417
FriOI GRGCYC 2 cut(s) 188, 194
Fsp4HI GCNGC 3 cut(s) 117, 644, 706
GluI GCNGC 3 cut(s) 117, 644, 706
GsaI CCCAGC 1 cut(s) 705
HgaI GACGC 1 cut(s) 761
Hin1II CATG 5 cut(s) 464, 482, 614, 725, 877
HinfI GANTC 3 cut(s) 148, 503, 654
Hpy166II GTNNAC 2 cut(s) 297, 717
Hpy188I TCNGA 8 cut(s) 175, 262, 508, 582, 607, 773, 781, 825
Hpy188III TCNNGA 2 cut(s) 397, 811
Hpy8I GTNNAC 2 cut(s) 297, 717
HpyAV CCTTC 3 cut(s) 268, 536, 632
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 4 cut(s) 202, 329, 602, 623
HpyF3I CTNAG 3 cut(s) 174, 778, 822
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 464, 482, 614, 725, 877
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 6 cut(s) 100, 104, 216, 457, 607, 870
LmnI GCTCC 3 cut(s) 26, 113, 178
LpnPI CCDG 9 cut(s) 48, 96, 269, 317, 401, 410, 440, 715, 870
Lsp1109I GCAGC 3 cut(s) 103, 630, 717
LweI GCATC 3 cut(s) 439, 610, 611
MaeII ACGT 1 cut(s) 343
MalI GATC 6 cut(s) 102, 106, 218, 459, 609, 872
MboI GATC 6 cut(s) 100, 104, 216, 457, 607, 870
MboII GAAGA 7 cut(s) 157, 217, 222, 281, 419, 527, 629
MhlI GDGCHC 2 cut(s) 188, 194
MluCI AATT 6 cut(s) 62, 196, 482, 551, 691, 849
MnlI CCTC 6 cut(s) 129, 169, 244, 259, 311, 541
Mph1103I ATGCAT 2 cut(s) 604, 625
MseI TTAA 2 cut(s) 93, 696
NdeI CATATG 1 cut(s) 230
NdeII GATC 6 cut(s) 100, 104, 216, 457, 607, 870
NlaIII CATG 5 cut(s) 464, 482, 614, 725, 877
NsiI ATGCAT 2 cut(s) 604, 625
NspV TTCGAA 1 cut(s) 538
PaeR7I CTCGAG 1 cut(s) 187
PfeI GAWTC 3 cut(s) 148, 503, 654
PkrI GCNGC 3 cut(s) 118, 645, 707
Ple19I CGATCG 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 701
PspXI VCTCGAGB 1 cut(s) 187
PvuI CGATCG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 93, 696
SatI GCNGC 3 cut(s) 117, 644, 706
Sau3AI GATC 6 cut(s) 100, 104, 216, 457, 607, 870
SduI GDGCHC 2 cut(s) 188, 194
SetI ASST 9 cut(s) 16, 118, 188, 346, 377, 390, 414, 688, 779
SfaNI GCATC 3 cut(s) 439, 610, 611
Sfr274I CTCGAG 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 538
SlaI CTCGAG 1 cut(s) 187
SmlI CTYRAG 3 cut(s) 187, 452, 681
SmoI CTYRAG 3 cut(s) 187, 452, 681
Sse9I AATT 6 cut(s) 62, 196, 482, 551, 691, 849
SsiI CCGC 2 cut(s) 58, 79
SstI GAGCTC 1 cut(s) 188
TaiI ACGT 1 cut(s) 346
TaqI TCGA 7 cut(s) 103, 107, 188, 222, 538, 594, 810
TaqII GACCGA 1 cut(s) 732
TasI AATT 6 cut(s) 62, 196, 482, 551, 691, 849
TfiI GAWTC 3 cut(s) 148, 503, 654
Tru1I TTAA 2 cut(s) 93, 696
Tru9I TTAA 2 cut(s) 93, 696
TscAI CASTG 1 cut(s) 864
TseI GCWGC 3 cut(s) 116, 643, 705
TspDTI ATGAA 2 cut(s) 495, 516
TspRI CASTG 1 cut(s) 864
XapI RAATTY 2 cut(s) 551, 691
XhoI CTCGAG 1 cut(s) 187
XmiI GTMKAC 2 cut(s) 296, 716
Zsp2I ATGCAT 2 cut(s) 604, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.