Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006203

Physical Location & Seq

Genomic Coordinates Forward (+)

40345 .. 48793

Gene Structure 8449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00040.16

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3414 bp

ATGCAACACACGGACCCAGAAAAGGAAGGGAAGCTCCGACGGTTGCAGGAGAGCGTAGAGGCCCATCCAGATGACCCCTCCCTTCGCTTCCAACTGGGAGTGTTGTTGTGGAAAGAGTGGGATGACAAGGAGAAAGCGGCAGAGCAGTTCCTAGTCGCCGCGAAATTGAAGCCTGAGATTGAAAAGGGAGGGGCATTCACATATCTAGGGCTTTATTACGCGGGTCTTGGCTCCGAGTCCCACACCCAGAGAGCTCTCAAGTGTTTCCAAAAAGCTGTCTCTCTCAATCCCGATGACTCCCTTTCTGGGGAAGCCTTGTGTGATTTGTTGGACCAACAAGGAAAGGAGAGCTTGGAGGTGGCCGTGTGCCGGGAGGCTTCCCAAAATTCACCCAGGGCCTTTTGGGCTTTTCAGAGACTGGGTTACTTGCAGCTCCATCAAAACAAATGCTCTGATGCTGTCCACAGTCTTCAACATGCCATTCGAGGCTATCCTACCTCCGCACATCTCTGGGAGGCTCTTGGCCTTGCGTACCAGCGACTAGGCAGGTTCACTGCTGCTTTAAAGTCCTATGGAAGAGCCATCGAATTGGAGGGTACAAGAATATTTGCGTTGCTTGAAAGCGGAAACACCTTTTTGATGCTTGGTTCCTATAAAAAGGGAGTTGAGACGTTTCAGCAAGCTTTAGAGATCTCCCCCAAAAGTGTCTCTGCACACTATGGGCTTGCTGCTGGGATGCTTGGTTTGGCCAAGGAATGCAATAATTTGGGAGCATATAGATGGGGAGCTACAGTGCTAGAGGAGGCATCTAGAGTTGCCTGGATGAGCACTCAATTAGCTGGAAATTTGTCATCTATTTGGAAACTGCATGGTGACATACAGCTTACTTATGCAAAGTGTTATCCATGGATGGAGGAGGGAAATGGTTTAGAATTTGATATGGAATCTTTTGATAATTCCATCCTTTCATGGAAACGTACCTGCTGTTTGGCTGCGAAAACTGCCAGGTGCTCTTATCAACGAGCTTTACACTTGGCCCCATGGCAAGCTAATATGTATACTGACATTGCAGTAACTTCAGATCTCATAGACTCTTTAGACAACAGTTCTGGACATGACTTAAGTGCTTGGCAGCAATCAGAGAAGATGGCTTTGGGAGCCTTGTTACTTGAGGGTGACAATTCTGAGTTTTGGGTAGCCTTGGGATGTTTGTCTGATCATAAAGCATTGAAACAACATGCTCTAATCAGGGGATTGCAATTGAATGTATCTCTAGCTGTTGCTTGGGCATACCTAGGGAAGCTTTATAGAAAACAAGGTGAGAAACAATTTGCTAGACAATCATTTGATTGTGCCAGAAGTATAGATCCTTCACTTGCTTTACCATGGGCAGGCATGTCAGCTGATTTTCATGCTGGAGAGTCTGCAGTCGGAGAAGCTTACGAGAGCTGCTTACGAGCTGCACAGATATTGCCTCTTGCCGAATTCCAAATTGGTCTTGCAAAGCTTGCTCTTGCTTCAGGGAATCTTTCATCTTCACAGGTCTTTGAAGCCATCAGGCAGGCCATGCAGCGTGCACCTCACTATCCTGAATGCCATAATTTGAACGGGCTAGTTTCTGAGGCACAATGCAATTATCAGTCTGCTGCCGTTTCTTATAGACTAGCACGCTGTGCAATCACCAATTTGTCAGGCAGTGACAGAAAGTCGCATATGACGGATATATCTGTCAATTTGGCCCGATCCCTTAGTAAGGCAGGGAATGCTCTAGATGCTTTGCACGAATGTGAAGATTTGAAGAAAGAAGGGTTGCTCGACGTGGAAGGTTTGCAAATATATGCTTTCTCCTTGTGGCAACTTGGTGAGACTAACCTGGCTCTTTCTGTGGTAAGAAGTCTGGCTGTGAGCGTTTCTACAATGGAGCAAAAATCTGCAGCTGCCCCTGTTGTTTTTATCTGTAGACTCCTTTATTATATTTCTGGACTGGATTCAGCCATCAATAGCATTCTGAAGATGCCAAAGCAACTATTTCGGAGTTCGAAGATCAGTTTCATAGTATCTGCTATTCATGCTCTAGATCAAAGTAATCGTCTTCAGTCTATTGTGTCAAGCACCCGTGACTATCTTAAGTCTCATGAAGAGATAACTGGAATGCACTTTTTGATAGCACTTGGTAAACTAGTAAAACATGGATCAGAATGCTGTCTTGGATATCAAGGCGGAGTTAATCACCTTAGGAAAGCTCTTCATATGTATCCTAACAGTAGCGTATTAAGGAATTTTCTTGGTTATCTTTTGTTGTCCACTGAAGAATGGAATGATACCCACATTGCAACTAGGTGTTGCAATGTTGATACTATGAATCCAATTGAAGGTGGTTTAAAATCAGCATATGAAATTCTTGGTGCAGGAGCAGTTGCTTGCTATGCTGTTGGCACTTGCAATCCCAAGTTCTCTTACCCAACATGCACATACCAGTGCCTGAATGAACCTGGAACCATCCAGCAACTACAGAAATGTTTACGCAGAGAACCATGGAACCAGAACATAAGGTATTTGCTTGTTCTCAATTTACTGCAGAAGGCACGTGAAGAGAGATTTCCTTGCCATCTTTGTATTATACTTGAGCGGCTAATAACTGTAGCTCTTTCCGATGAATTTTATCATAATGATGACTCATCTTATGAATATAAGAAATTCCAGCTTCTACTTTGTGCTTCTGAGATCTGTTTGCAAGGTGGTAATTTGACTGGCTGTATCAACCATGCCACAAATGCTTCATCGATTATGCTCCCTGATGGCTATCTTTTCTTTGCACACTTGCTACTACTCCGTGCCTATGCCTCAGAAGAACTGAGCTTCAGAGAATGCCCAACAGAGTCAATGAATTCACGGAATATGTGGGGGGCTATATTCAGTCTGGTGAAAGGCTTGATTTGTATATGGAACCAGGACATTGTTTCTGCAGAAGAGTTTCTTGCACAAGCTTGTTCATTGGCGGGTGCTGAGTGCAGCCTCCTGCTTTGTCATGGTGCCACCTGTATGGAGCTTTCCCGCCGGGGGTGTGCTTCACAGTTCTTATCACTTGCCTTAAGGAGTCTTGTTAAAGCTCAAGAAGCTTCTCTCATTCCCTTACCAATTGTCTCAGCATTACTAGCGCAAGCAGTAGCAAGTCTTGGCTCAAAAGAGAAGTGGGAGAAGAACCTCCGTCTTGAATGGCCCACTTGGCCGCCAGAAATGAGGCCTGCTGAGCTGTTCTTCCAGATGCATTTGCTTGCAAAACAGTCAAAAGCTAGTCCACAATCTTCCAGTGTGGAGTTTTGTCAGAGTCCGCAAAGATGGGTTCTTCGAGCAATTCATACAAACCCTTCTTGTATGAGATATTGGACGGTTTTGCAGAAGTTTGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0019439 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035327 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070478 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

1138

Amino Acids

126.32

Weight (kDa)

6.63

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76630 AT1G76630 AT1G76630
fragaria_vesca	FvH4_5g26690 FvH4_5g26690 FvH4_5g26690 FvH4_5g26690 FvH4_5g26690 FvH4_5g26690
malus_domestica	MD06G1000600.v1.1
prunus_persica	Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1
pyrus_communis	pycom06g00040
rosa_chinensis	RchiOBHm_Chr7g0217581
rosa_laevigata	RLG00000002459
rosa_multiflora	Rmu_sc0006161.1_g000003
rosa_roxburghii	Rroxscaffold_3G00241850
rosa_rugosa	Rorug07G0170300
rosa_samantha	Rh7AG310100 Rh7BG301200 Rh7CG329200 Rh7DG309700
rosa_wichuraiana	Rw7G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	537, 989
AccB1I	GGYRCC	1 cut(s)	3032
AccBSI	CCGCTC	1 cut(s)	2629
AccI	GTMKAC	2 cut(s)	1058, 1960
AccII	CGCG	2 cut(s)	161, 221
AclWI	GGATC	3 cut(s)	1361, 1737, 2200
AcoI	YGGCCR	3 cut(s)	360, 747, 3227
AcsI	RAATTY	9 cut(s)	385, 844, 932, 1484, 2278, 2397, 2657, 2696, 2887
AcuI	CTGAAG	6 cut(s)	1062, 1503, 2030, 2078, 2328, 2845
AcvI	CACGTG	1 cut(s)	2588
AdeI	CACNNNGTG	1 cut(s)	1673
AfaI	GTAC	3 cut(s)	533, 598, 979
AfiI	CCNNNNNNNGG	8 cut(s)	22, 306, 307, 369, 1391, 1753, 2372, 3060
AflII	CTTAAG	3 cut(s)	1120, 2126, 3091
AhdI	GACNNNNNGTC	1 cut(s)	1705
AhlI	ACTAGT	1 cut(s)	2179
AjiI	CACGTC	1 cut(s)	1819
AjnI	CCWGG	6 cut(s)	392, 818, 1004, 1872, 2491, 2949
AjuI	GAANNNNNNNTTGG	6 cut(s)	1136, 1168, 1476, 1508, 2190, 2222
AleI	CACNNNNGTG	1 cut(s)	1785
Alw21I	GWGCWC	4 cut(s)	256, 830, 1013, 1579
Alw26I	GTCTC	7 cut(s)	283, 409, 662, 712, 1859, 2136, 3148
Alw44I	GTGCAC	1 cut(s)	1575
AlwI	GGATC	3 cut(s)	1361, 1737, 2200
AlwNI	CAGNNNCTG	2 cut(s)	418, 2482
ApaLI	GTGCAC	1 cut(s)	1575
ApoI	RAATTY	9 cut(s)	385, 844, 932, 1484, 2278, 2397, 2657, 2696, 2887
ArsI	GACNNNNNNTTYG	2 cut(s)	2074, 2106
Asp700I	GAANNNNTTC	1 cut(s)	2973
AspA2I	CCTAGG	1 cut(s)	1294
AspLEI	GCGC	1 cut(s)	3160
AspS9I	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3219
AsuC2I	CCSGG	2 cut(s)	371, 3059
AsuHPI	GGTGA	8 cut(s)	381, 884, 1187, 1331, 1672, 1874, 2222, 2935
AsuII	TTCGAA	1 cut(s)	2039
AvaII	GGWCC	2 cut(s)	13, 331
AvrII	CCTAGG	1 cut(s)	1294
AxyI	CCTNAGG	1 cut(s)	2234
BaeGI	GKGCMC	1 cut(s)	1579
BalI	TGGCCA	1 cut(s)	749
BanI	GGYRCC	1 cut(s)	3032
BanII	GRGCYC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	1354, 1386
BbrPI	CACGTG	1 cut(s)	2588
BbsI	GAAGAC	2 cut(s)	461, 2084
Bbv12I	GWGCWC	4 cut(s)	256, 830, 1013, 1579
BceAI	ACGGC	2 cut(s)	347, 1634
BcgI	CGANNNNNNTGC	2 cut(s)	2012, 2046
BciT130I	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 2951
BciVI	GTATCC	1 cut(s)	2265
BclI	TGATCA	1 cut(s)	1216
BcnI	CCSGG	2 cut(s)	371, 3059
BcoDI	GTCTC	7 cut(s)	283, 409, 662, 712, 1859, 2136, 3148
BcuI	ACTAGT	1 cut(s)	2179
BfmI	CTRYAG	8 cut(s)	789, 1425, 1932, 1957, 2510, 2576, 2640, 2964
BfrI	CTTAAG	3 cut(s)	1120, 2126, 3091
BfuAI	ACCTGC	2 cut(s)	537, 989
BfuI	GTATCC	1 cut(s)	2265
BglI	GCCNNNNNGGC	2 cut(s)	404, 3226
BglII	AGATCT	3 cut(s)	690, 1081, 2724
BlnI	CCTAGG	1 cut(s)	1294
BlpI	GCTNAGC	1 cut(s)	3249
Bme1390I	CCNGG	8 cut(s)	371, 394, 820, 1006, 1874, 2493, 2951, 3059
Bme18I	GGWCC	2 cut(s)	13, 331
BmeRI	GACNNNNNGTC	1 cut(s)	1705
BmgBI	CACGTC	1 cut(s)	1819
BmgT120I	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3219
BmiI	GGNNCC	9 cut(s)	15, 232, 649, 1038, 1159, 2497, 2540, 2948, 3034
BmrFI	CCNGG	8 cut(s)	371, 394, 820, 1006, 1874, 2493, 2951, 3059
BmrI	ACTGGG	2 cut(s)	104, 428
BmsI	GCATC	7 cut(s)	445, 630, 726, 815, 1762, 2004, 3255
BmuI	ACTGGG	2 cut(s)	104, 428
BpiI	GAAGAC	2 cut(s)	461, 2084
BpmI	CTGGAG	1 cut(s)	1437
Bpu1102I	GCTNAGC	1 cut(s)	3249
Bpu14I	TTCGAA	1 cut(s)	2039
BpuEI	CTTGAG	4 cut(s)	242, 1190, 2645, 3096
BpuMI	CCSGG	2 cut(s)	371, 3059
Bsa29I	ATCGAT	1 cut(s)	2783
BsaAI	YACGTR	1 cut(s)	2588
BsaBI	GATNNNNATC	1 cut(s)	2802
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bsc4I	CCNNNNNNNGG	8 cut(s)	22, 306, 307, 369, 1391, 1753, 2372, 3060
Bse1I	ACTGG	7 cut(s)	99, 423, 1989, 2152, 2476, 2755, 3309
Bse21I	CCTNAGG	1 cut(s)	2234
Bse3DI	GCAATG	3 cut(s)	1065, 2328, 2353
Bse8I	GATNNNNATC	1 cut(s)	2802
BseBI	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 2951
BseCI	ATCGAT	1 cut(s)	2783
BseGI	GGATG	8 cut(s)	64, 127, 741, 828, 915, 960, 1211, 2499
BseJI	GATNNNNATC	1 cut(s)	2802
BseLI	CCNNNNNNNGG	8 cut(s)	22, 306, 307, 369, 1391, 1753, 2372, 3060
BseMI	GCAATG	3 cut(s)	1065, 2328, 2353
BseMII	CTCAG	9 cut(s)	165, 1176, 1611, 2712, 2846, 2859, 2997, 3159, 3240
BseNI	ACTGG	7 cut(s)	99, 423, 1989, 2152, 2476, 2755, 3309
BseRI	GAGGAG	2 cut(s)	815, 929
BseSI	GKGCMC	1 cut(s)	1579
BseYI	CCCAGC	1 cut(s)	731
BsgI	GTGCAG	4 cut(s)	696, 1446, 2427, 3031
Bsh1236I	CGCG	2 cut(s)	161, 221
BshNI	GGYRCC	1 cut(s)	3032
BshVI	ATCGAT	1 cut(s)	2783
BsiHKAI	GWGCWC	4 cut(s)	256, 830, 1013, 1579
BsiSI	CCGG	2 cut(s)	370, 3058
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	8 cut(s)	22, 306, 307, 369, 1391, 1753, 2372, 3060
BsmAI	GTCTC	7 cut(s)	283, 409, 662, 712, 1859, 2136, 3148
BsmBI	CGTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	8 cut(s)	194, 761, 1598, 1768, 2004, 2157, 2204, 2873
Bsp119I	TTCGAA	1 cut(s)	2039
Bsp1286I	GDGCHC	4 cut(s)	256, 830, 1013, 1579
Bsp143I	GATC	9 cut(s)	690, 1081, 1216, 1366, 1742, 2043, 2077, 2192, 2724
Bsp1720I	GCTNAGC	1 cut(s)	3249
Bsp19I	CCATGG	4 cut(s)	905, 1040, 1385, 2534
BspCNI	CTCAG	9 cut(s)	166, 1177, 1612, 2713, 2847, 2858, 2998, 3158, 3241
BspDI	ATCGAT	1 cut(s)	2783
BspFNI	CGCG	2 cut(s)	161, 221
BspHI	TCATGA	1 cut(s)	2134
BspLI	GGNNCC	9 cut(s)	15, 232, 649, 1038, 1159, 2497, 2540, 2948, 3034
BspMAI	CTGCAG	4 cut(s)	1429, 1936, 2580, 2968
BspMI	ACCTGC	2 cut(s)	537, 989
BspPI	GGATC	3 cut(s)	1361, 1737, 2200
BspQI	GCTCTTC	2 cut(s)	571, 2250
BspT104I	TTCGAA	1 cut(s)	2039
BspT107I	GGYRCC	1 cut(s)	3032
BspTI	CTTAAG	3 cut(s)	1120, 2126, 3091
BsrBI	CCGCTC	1 cut(s)	2629
BsrDI	GCAATG	3 cut(s)	1065, 2328, 2353
BsrI	ACTGG	7 cut(s)	99, 423, 1989, 2152, 2476, 2755, 3309
BssMI	GATC	9 cut(s)	690, 1081, 1216, 1366, 1742, 2043, 2077, 2192, 2724
BssNAI	GTATAC	1 cut(s)	1059
BssT1I	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
Bst1107I	GTATAC	1 cut(s)	1059
Bst2UI	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 2951
Bst4CI	ACNGT	9 cut(s)	42, 467, 793, 1106, 2264, 2641, 3075, 3285, 3391
Bst6I	CTCTTC	5 cut(s)	571, 2133, 2250, 2586, 2964
BstAFI	CTTAAG	3 cut(s)	1120, 2126, 3091
BstAPI	GCANNNNNTGC	4 cut(s)	1508, 1567, 1673, 1763
BstBAI	YACGTR	1 cut(s)	2588
BstBI	TTCGAA	1 cut(s)	2039
BstDSI	CCRYGG	4 cut(s)	905, 1040, 1385, 2534
BstENI	CCTNNNNNAGG	1 cut(s)	1751
BstF5I	GGATG	8 cut(s)	64, 127, 741, 828, 915, 960, 1211, 2499
BstFNI	CGCG	2 cut(s)	161, 221
BstHHI	GCGC	1 cut(s)	3160
BstKTI	GATC	9 cut(s)	693, 1084, 1219, 1369, 1745, 2046, 2080, 2195, 2727
BstMAI	GTCTC	7 cut(s)	283, 409, 662, 712, 1859, 2136, 3148
BstMBI	GATC	9 cut(s)	690, 1081, 1216, 1366, 1742, 2043, 2077, 2192, 2724
BstNI	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 2951
BstNSI	RCATGY	4 cut(s)	479, 1241, 1399, 2469
BstSCI	CCNGG	8 cut(s)	369, 392, 818, 1004, 1872, 2491, 2949, 3057
BstSFI	CTRYAG	8 cut(s)	789, 1425, 1932, 1957, 2510, 2576, 2640, 2964
BstSLI	GKGCMC	1 cut(s)	1579
BstUI	CGCG	2 cut(s)	161, 221
BstV2I	GAAGAC	2 cut(s)	461, 2084
BstX2I	RGATCY	4 cut(s)	690, 1081, 1366, 2724
BstXI	CCANNNNNNTGG	2 cut(s)	589, 3043
BstYI	RGATCY	4 cut(s)	690, 1081, 1366, 2724
BstZ17I	GTATAC	1 cut(s)	1059
Bsu15I	ATCGAT	1 cut(s)	2783
Bsu36I	CCTNAGG	1 cut(s)	2234
BsuI	GTATCC	1 cut(s)	2265
BsuTUI	ATCGAT	1 cut(s)	2783
BtgI	CCRYGG	4 cut(s)	905, 1040, 1385, 2534
BtrI	CACGTC	1 cut(s)	1819
BtsCI	GGATG	8 cut(s)	64, 127, 741, 828, 915, 960, 1211, 2499
BtsI	GCAGTG	2 cut(s)	552, 1702
BtsIMutI	CAGTG	6 cut(s)	552, 798, 1702, 2304, 2483, 3316
BveI	ACCTGC	2 cut(s)	537, 989
CaiI	CAGNNNCTG	2 cut(s)	418, 2482
CciI	TCATGA	1 cut(s)	2134
CfoI	GCGC	1 cut(s)	3160
Cfr13I	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3219
ClaI	ATCGAT	1 cut(s)	2783
Csp6I	GTAC	3 cut(s)	532, 597, 978
CviQI	GTAC	3 cut(s)	532, 597, 978
DpnI	GATC	9 cut(s)	692, 1083, 1218, 1368, 1744, 2045, 2079, 2194, 2726
DpnII	GATC	9 cut(s)	690, 1081, 1216, 1366, 1742, 2043, 2077, 2192, 2724
DraI	TTTAAA	2 cut(s)	564, 2382
DraIII	CACNNNGTG	1 cut(s)	1673
DriI	GACNNNNNGTC	1 cut(s)	1705
EaeI	YGGCCR	3 cut(s)	360, 747, 3227
Eam1104I	CTCTTC	5 cut(s)	571, 2133, 2250, 2586, 2964
Eam1105I	GACNNNNNGTC	1 cut(s)	1705
EarI	CTCTTC	5 cut(s)	571, 2133, 2250, 2586, 2964
EciI	GGCGGA	1 cut(s)	2235
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
Eco147I	AGGCCT	1 cut(s)	3244
Eco24I	GRGCYC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	2213
Eco47I	GGWCC	2 cut(s)	13, 331
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	6 cut(s)	1062, 1503, 2030, 2078, 2328, 2845
Eco72I	CACGTG	1 cut(s)	2588
Eco81I	CCTNAGG	1 cut(s)	2234
EcoICRI	GAGCTC	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	1751
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRI	GAATTC	2 cut(s)	1484, 2887
EcoRII	CCWGG	6 cut(s)	392, 818, 1004, 1872, 2491, 2949
EcoRV	GATATC	1 cut(s)	2213
EcoT14I	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
EcoT22I	ATGCAT	1 cut(s)	3270
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
Esp3I	CGTCTC	1 cut(s)	662
FalI	AAGNNNNNCTT	4 cut(s)	335, 367, 2961, 2993
FaqI	GGGAC	1 cut(s)	223
FauI	CCCGC	3 cut(s)	214, 2992, 3062
FauNDI	CATATG	3 cut(s)	1713, 2250, 2392
FbaI	TGATCA	1 cut(s)	1216
FblI	GTMKAC	2 cut(s)	1058, 1960
FokI	GGATG	8 cut(s)	51, 134, 748, 835, 922, 947, 1218, 2486
FriOI	GRGCYC	1 cut(s)	256
GlaI	GCGC	1 cut(s)	3159
GsaI	CCCAGC	1 cut(s)	735
GsuI	CTGGAG	1 cut(s)	1437
HapII	CCGG	2 cut(s)	370, 3058
HhaI	GCGC	1 cut(s)	3160
Hin6I	GCGC	1 cut(s)	3158
HinP1I	GCGC	1 cut(s)	3158
HindIII	AAGCTT	6 cut(s)	681, 1301, 1437, 1505, 2985, 3117
HpaII	CCGG	2 cut(s)	370, 3058
HphI	GGTGA	8 cut(s)	381, 884, 1187, 1331, 1672, 1874, 2222, 2935
Hpy166II	GTNNAC	9 cut(s)	463, 552, 1059, 1577, 1961, 2177, 2304, 2522, 3299
Hpy8I	GTNNAC	9 cut(s)	463, 552, 1059, 1577, 1961, 2177, 2304, 2522, 3299
Hpy99I	CGWCG	2 cut(s)	42, 1820
HpyAV	CCTTC	8 cut(s)	20, 92, 1380, 1799, 1817, 2366, 2575, 3378
HpyCH4III	ACNGT	9 cut(s)	42, 467, 793, 1106, 2264, 2641, 3075, 3285, 3391
HpyCH4IV	ACGT	4 cut(s)	671, 976, 1818, 2587
HpySE526I	ACGT	4 cut(s)	671, 976, 1818, 2587
HspAI	GCGC	1 cut(s)	3158
Ksp22I	TGATCA	1 cut(s)	1216
Kzo9I	GATC	9 cut(s)	690, 1081, 1216, 1366, 1742, 2043, 2077, 2192, 2724
LguI	GCTCTTC	2 cut(s)	571, 2250
LweI	GCATC	7 cut(s)	445, 630, 726, 815, 1762, 2004, 3255
MaeII	ACGT	4 cut(s)	671, 976, 1818, 2587
MaeIII	GTNAC	7 cut(s)	422, 872, 1072, 1164, 1175, 1697, 2117
MalI	GATC	9 cut(s)	692, 1083, 1218, 1368, 1744, 2045, 2079, 2194, 2726
MbiI	CCGCTC	1 cut(s)	2629
MboI	GATC	9 cut(s)	690, 1081, 1216, 1366, 1742, 2043, 2077, 2192, 2724
MfeI	CAATTG	3 cut(s)	1259, 2367, 3138
MflI	RGATCY	4 cut(s)	690, 1081, 1366, 2724
MhlI	GDGCHC	4 cut(s)	256, 830, 1013, 1579
MlsI	TGGCCA	1 cut(s)	749
MluNI	TGGCCA	1 cut(s)	749
MlyI	GAGTC	9 cut(s)	245, 290, 1085, 1430, 1956, 2669, 2888, 3106, 3337
MmeI	TCCRAC	4 cut(s)	61, 115, 309, 1411
Mox20I	TGGCCA	1 cut(s)	749
Mph1103I	ATGCAT	1 cut(s)	3270
MroXI	GAANNNNTTC	1 cut(s)	2973
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	8 cut(s)	563, 1121, 2127, 2226, 2273, 2381, 3092, 3105
MslI	CAYNNNNRTG	6 cut(s)	69, 778, 1785, 2476, 2670, 3041
Msp20I	TGGCCA	1 cut(s)	749
MspA1I	CMGCKG	2 cut(s)	1403, 1937
MspCI	CTTAAG	3 cut(s)	1120, 2126, 3091
MspI	CCGG	2 cut(s)	370, 3058
MspR9I	CCNGG	8 cut(s)	371, 394, 820, 1006, 1874, 2493, 2951, 3059
MunI	CAATTG	3 cut(s)	1259, 2367, 3138
Mva1269I	GAATGC	8 cut(s)	194, 761, 1598, 1768, 2004, 2157, 2204, 2873
MvaI	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 2951
MvnI	CGCG	2 cut(s)	161, 221
NciI	CCSGG	2 cut(s)	371, 3059
NcoI	CCATGG	4 cut(s)	905, 1040, 1385, 2534
NdeI	CATATG	3 cut(s)	1713, 2250, 2392
NdeII	GATC	9 cut(s)	690, 1081, 1216, 1366, 1742, 2043, 2077, 2192, 2724
NlaIV	GGNNCC	9 cut(s)	15, 232, 649, 1038, 1159, 2497, 2540, 2948, 3034
NmuCI	GTSAC	4 cut(s)	872, 1175, 1697, 2117
NsiI	ATGCAT	1 cut(s)	3270
NspI	RCATGY	4 cut(s)	479, 1241, 1399, 2469
NspV	TTCGAA	1 cut(s)	2039
OliI	CACNNNNGTG	1 cut(s)	1785
PagI	TCATGA	1 cut(s)	2134
PasI	CCCWGGG	1 cut(s)	393
PceI	AGGCCT	1 cut(s)	3244
PciSI	GCTCTTC	2 cut(s)	571, 2250
PctI	GAATGC	8 cut(s)	194, 761, 1598, 1768, 2004, 2157, 2204, 2873
PdmI	GAANNNNTTC	1 cut(s)	2973
PfeI	GAWTC	4 cut(s)	944, 1525, 1988, 2362
PleI	GAGTC	9 cut(s)	244, 290, 1085, 1429, 1956, 2669, 2887, 3105, 3336
PmaCI	CACGTG	1 cut(s)	2588
PmlI	CACGTG	1 cut(s)	2588
PpsI	GAGTC	9 cut(s)	244, 290, 1085, 1429, 1956, 2669, 2887, 3105, 3336
Ppu21I	YACGTR	1 cut(s)	2588
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	6 cut(s)	392, 818, 1004, 1872, 2491, 2949
PspCI	CACGTG	1 cut(s)	2588
PspFI	CCCAGC	1 cut(s)	731
PspGI	CCWGG	6 cut(s)	392, 818, 1004, 1872, 2491, 2949
PspN4I	GGNNCC	9 cut(s)	15, 232, 649, 1038, 1159, 2497, 2540, 2948, 3034
PspPI	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3219
PstI	CTGCAG	4 cut(s)	1429, 1936, 2580, 2968
PstNI	CAGNNNCTG	2 cut(s)	418, 2482
PsuI	RGATCY	4 cut(s)	690, 1081, 1366, 2724
PvuII	CAGCTG	2 cut(s)	1403, 1937
RsaI	GTAC	3 cut(s)	533, 598, 979
RsaNI	GTAC	3 cut(s)	532, 597, 978
RseI	CAYNNNNRTG	6 cut(s)	69, 778, 1785, 2476, 2670, 3041
SacI	GAGCTC	1 cut(s)	256
SapI	GCTCTTC	2 cut(s)	571, 2250
SaqAI	TTAA	8 cut(s)	563, 1121, 2127, 2226, 2273, 2381, 3092, 3105
Sau3AI	GATC	9 cut(s)	690, 1081, 1216, 1366, 1742, 2043, 2077, 2192, 2724
Sau96I	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3219
SchI	GAGTC	9 cut(s)	245, 290, 1085, 1430, 1956, 2669, 2888, 3106, 3337
ScrFI	CCNGG	8 cut(s)	371, 394, 820, 1006, 1874, 2493, 2951, 3059
SduI	GDGCHC	4 cut(s)	256, 830, 1013, 1579
SfaNI	GCATC	7 cut(s)	445, 630, 726, 815, 1762, 2004, 3255
SfcI	CTRYAG	8 cut(s)	789, 1425, 1932, 1957, 2510, 2576, 2640, 2964
SfiI	GGCCNNNNNGGCC	1 cut(s)	3226
SfuI	TTCGAA	1 cut(s)	2039
SinI	GGWCC	2 cut(s)	13, 331
SmiMI	CAYNNNNRTG	6 cut(s)	69, 778, 1785, 2476, 2670, 3041
SmlI	CTYRAG	7 cut(s)	257, 1120, 1169, 2126, 2624, 3091, 3111
SmoI	CTYRAG	7 cut(s)	257, 1120, 1169, 2126, 2624, 3091, 3111
SpeI	ACTAGT	1 cut(s)	2179
SseBI	AGGCCT	1 cut(s)	3244
SspI	AATATT	1 cut(s)	606
SstI	GAGCTC	1 cut(s)	256
StuI	AGGCCT	1 cut(s)	3244
StyD4I	CCNGG	8 cut(s)	369, 392, 818, 1004, 1872, 2491, 2949, 3057
StyI	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
TaaI	ACNGT	9 cut(s)	42, 467, 793, 1106, 2264, 2641, 3075, 3285, 3391
TaiI	ACGT	4 cut(s)	674, 979, 1821, 2590
TaqI	TCGA	6 cut(s)	484, 585, 1815, 2039, 2783, 3349
TauI	GCSGC	4 cut(s)	140, 161, 2632, 3232
TfiI	GAWTC	4 cut(s)	944, 1525, 1988, 2362
Tru1I	TTAA	8 cut(s)	563, 1121, 2127, 2226, 2273, 2381, 3092, 3105
Tru9I	TTAA	8 cut(s)	563, 1121, 2127, 2226, 2273, 2381, 3092, 3105
TscAI	CASTG	6 cut(s)	559, 798, 1702, 2311, 2483, 3316
TseFI	GTSAC	4 cut(s)	872, 1175, 1697, 2117
Tsp45I	GTSAC	4 cut(s)	872, 1175, 1697, 2117
TspGWI	ACGGA	5 cut(s)	26, 1733, 2822, 2908, 3197
TspRI	CASTG	6 cut(s)	559, 798, 1702, 2311, 2483, 3316
Vha464I	CTTAAG	3 cut(s)	1120, 2126, 3091
VneI	GTGCAC	1 cut(s)	1575
VpaK11BI	GGWCC	2 cut(s)	13, 331
XagI	CCTNNNNNAGG	1 cut(s)	1751
XapI	RAATTY	9 cut(s)	385, 844, 932, 1484, 2278, 2397, 2657, 2696, 2887
XbaI	TCTAGA	3 cut(s)	809, 1768, 2074
XceI	RCATGY	4 cut(s)	479, 1241, 1399, 2469
XmaJI	CCTAGG	1 cut(s)	1294
XmiI	GTMKAC	2 cut(s)	1058, 1960
XmnI	GAANNNNTTC	1 cut(s)	2973
Zsp2I	ATGCAT	1 cut(s)	3270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.