Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006203

Physical Location & Seq

Genomic Coordinates Reverse (-)

58421 .. 67349

Gene Structure 8929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1000600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3543 bp

ATGCAACACACGGACCCAGAAAAGGAAGGGAAGCTCCGACGGTTGCAGGAGAGCGTAGAGGCCCATCCAGATGACCCCTCCCTTCGCTTCCAACTGGGAGTGTTGTTGTGGAAAGAGTGGGATGACAAGGAAAAAGCGGCAGAGCAGCTCCTAGTCGCCGCGAAATTGAAGCCTGAGATTGAAAAGGGAGGGGCATTCACATATCTAGGGCTTTATTACGCGGGTCTTGACTCCGAGTCCCACACCCAGAGAGCTCTCAAGTGTTTCCAAAAAGCTATCTCTCTCAATCCTGATGACTCCCTTTCTGGGGAAGCCTTGTGTGATTTGTTGGACCAACAAGGAAAGGAGAGCTTGGAGGTGGCTGTGTGCCGGGAGGCTTCCCAAAACTCACCCAGGGCCTTTTGGGCTTTTCAGAGACTGGGTTACTTGCAGCTCCATCAAAACAAATGCTCTGAAGCTGTCCACAGTCTTCAACATGCCATTCGTGGCTATCCTACCTCCGCACATCTCTGGGAGGCACTTGGCCTTGCCTACCAGCGACTAGGCAGGTTCACTGCTGCTCTAAAGTCCTATGGAAGAGCCATCGAATTGGAGGGTACAAGAATATTTGCATTGCTTGAAAGCGGAAACACCTTTTTGATGCTTGGTTCCTATAAAAAGGGAGTTGAGACATTTCAGCAAGCTTTAGAGATCTCCCCCAAAAGTGTCTCTGCACACTATGGGCTTGCTGCTGGGATGCTTGGTTTGGCCAAGGAATGTAATAATTTGGGAGCATATAGATGGGGAGCTACAGTGCTAGAGGAGGCATCTAAAGTTGCCTGGATGAGCACTCAATTAGCTGGAAATATGTCATCTATTTGGAAACTGCATGGTGACATACAGCTTACTTATGCAAAGTGTTATCCATGGATGGAGGAGGGAAACGGTTTAGAATTTGATATGGAATCTTTTGATAATTCCATCCTTTCATGGAAACGTACCTGCTGTTTGGCTGCAAAAACTGCCAGGTGCTCTTATCAACGAGCTTTGCACTTGGCCCCATGGCAAGCTAATATGTATACTGACATTGCAGTAACTTCAGATCTCATAGACTCTTTAGACAACAGTTCTGGACATGACTTAAGTGCTTGGCAGCAATCAGAGAAGATGGCTTTGGGAGCCTTGTTACTTGAGGGTGACAATTCTGAGTTTTGGGTAGCCTTGGGATGTTTATCTGATCATAAAGCACTGAAACAACATGCTCTAATCAGGGGATTGCAATTGAATGTATCTTTAGCTATTGCTTGGGCATACCTAGGGAAGCTTTATAGAAAACAAGGTGAGAAACAATTTGCTAGACAATCATTTGATTGTGCCAGAAGTATAGATCCTTCACTTGCTTTACCATGGGCAGGCATGTCAGCTGATTTTCATGCTGGAGAGTCTGCAGTTGGAGAAGCTTACGAGAGCTGCTTACGAGCTGCGCAGATATTGCCTCTTGCCGAATTCCAACTTGGTCTTGCAAAGCTTGCTCTTGCTTCAGGGAATCTCTCATCTTCACAGGTCTTTGGAGCCATCAGGCAGGCCATGCAGCGTGCACCTCACTATCCTGAATGCCATAATTTGAACGGGCTAGTTTCTGAGGCACAATGCAATTATCAGTCTGCTGCCGTTTCTTATAGACTAGCACGCTGTGCAATCACGAATTTGTCAGGCAGTGACAGAAAGTCTCATATGACGGATATATCTGTCAATTTGGCCCGATCCCTTAGTAAGGCAGGGAATGCTCTAGATGCTTTGCACGAATGTGAAGATTTGAAGAACGAAGGGTTGCTCGATGCGGAAGGTTTGCAAATATATGCTTTCTCCTTGTGGCAACTTGGTGAGACTAACCTGGCTCTTTCTGTGGTAAGAAGTCTGGCTGTGAGCGTTTGTACAATGGAACAAAAATCTGCAGCTGCCACTGTTGTTTTTATCTGTAGACTCCTTTATTATATTTCTGGACTGGATTCAGCCATCAATAGCATTCTGAAGATGCCAAAGCAACTATTTCGGAGTTCAAAGATCAGTTTCATATTATCTGCTATTCATGCTCTAGATCAAAATAATCGTCTTCAGTCTATTGTGTCAAGCACCCGTGACTATCTTAAGTCTCATGAAGAGATAACTGGAATGCACTTTTTGATAGCACTTGGTAAACTAGTAAAACATGGATCAGAATGCCGTCTTGGATATCAAAGCGGAGTTAATCACCTTAGGAAAGCTCTTCATATGTATCCTAACAGTAGCTTATTAAGGAATTTTCTTGGTTATCTTTTGTTGTCCACTGAAGAATGGAATGATACCCACATTGCAACTAGGTGTTGCAACGTCGATACTACCAATCCAATTGAAGCTGGTTTAAAATCAGCATATGAAATTCTTGGTGCTGGAGCAGTCGCTTGCTATGCTGTTGGCACTTGCAATCCGAAGTTCTCTTACCCAACATGCACATACCAGTGCCTGAATGAACCTGGAACCATCCAGCAACTACAGAAATGTTTACGCCGAGAACCATGGAACCAGAACATAAGGTATTTGCTTGTTCTCAATTTACTGCAGAAGGCACGTGAAGAGAGATTTCCTTGCCATCTTTGTATTATACTTGAGCGGCTAATAACTGTAGCTCTTTCTGATGAACTTTATCATAATGATGACTCATCTTATGAATATAAGAAATTCCAGTTTCTACTTTGTGCTTCTGAGATCTGTTTGCAAGGTGGTAATCTGACTGGCTGTATCAACCATGCCAAAAATGCTTCATCGATCATGCTCCCTGATGGCCATCTTTTCTTTGCACACTTGCTACTACTCCGTGCCTATGCCTCAGAAGGTAATACAGTAAACCTTCAAAAAGAGTATATAAGATGCTTGCAGCTCAAGACAGATCTTCATATTGGTTGGATATGTCTAAAACTCATGGAGTCTCGTTCTGAAGTGCAAACTGACTTGGATATGTTAGAACTGAGCTTCAGAGAATGCCCAACAGAGTTAATGAATTCACGGAATCTGTGGGGGGCTATATTCAGTCTGGTGAAAGGCTTGATTTGTATTTGGAACCAGGACATTGTTTCTGCAGAAGAGTTTCTTGCACAAGCTTGTTCATTGGCGGGCGCTGAGTGCAGCCTCCTGCTTTGTCATGGTGCCACCTGTATGGAGCTTTCCCGCCGGGGGTGTGCTTCACAGTTCTTATCACTTGCGATAAGGAGTCTTGTTAAAGCTCAAGAAGCTTCTCTCATTCCCCTACCAATTGTCTCAGCATTATTAGCGCAAGCAGTAGCAAGTCTTGGCTCAAAAGAGAAGTGGGAGAAGAACCTCCGTCTTGAATGGCCCACTTGGCCGCCAGAAATGAGGCCTGCTGAGCTGTTCTTCCAGATGCATTTGCTTGCAAAACAGTCAAAAGCTAGTCCACAATCTTCCAGTGTGGAGTTTTGTCAGAGTCCGCAAAGATGGGTTCTTCGAGCAATTCATACAAACCCTTCTTGTATGAGATATTGGAAGGTTTTGCAGAAGTTTGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0019439 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035327 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070478 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

1181

Amino Acids

131.47

Weight (kDa)

6.73

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76630 AT1G76630 AT1G76630
fragaria_vesca	FvH4_5g26690 FvH4_5g26690 FvH4_5g26690 FvH4_5g26690 FvH4_5g26690 FvH4_5g26690
malus_domestica	MD06G1000600.v1.1
prunus_persica	Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1 Prupe.5G001100_v2.0.a1
pyrus_communis	pycom06g00040
rosa_chinensis	RchiOBHm_Chr7g0217581
rosa_laevigata	RLG00000002459
rosa_multiflora	Rmu_sc0006161.1_g000003
rosa_roxburghii	Rroxscaffold_3G00241850
rosa_rugosa	Rorug07G0170300
rosa_samantha	Rh7AG310100 Rh7BG301200 Rh7CG329200 Rh7DG309700
rosa_wichuraiana	Rw7G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1464
Acc36I	ACCTGC	2 cut(s)	537, 989
AccB1I	GGYRCC	1 cut(s)	3161
AccBSI	CCGCTC	1 cut(s)	2629
AccI	GTMKAC	2 cut(s)	1058, 1960
AccII	CGCG	2 cut(s)	161, 221
AclWI	GGATC	3 cut(s)	1361, 1737, 2200
AcoI	YGGCCR	3 cut(s)	747, 2800, 3356
AcsI	RAATTY	7 cut(s)	932, 1484, 1684, 2278, 2397, 2696, 3016
AcuI	CTGAAG	8 cut(s)	474, 1062, 1503, 2030, 2078, 2328, 2973, 2974
AcvI	CACGTG	1 cut(s)	2588
AdeI	CACNNNGTG	1 cut(s)	1673
AfaI	GTAC	3 cut(s)	598, 979, 1915
AfiI	CCNNNNNNNGG	6 cut(s)	22, 306, 307, 1391, 1753, 3189
AflII	CTTAAG	2 cut(s)	1120, 2126
AhdI	GACNNNNNGTC	2 cut(s)	235, 1705
AhlI	ACTAGT	1 cut(s)	2179
AjnI	CCWGG	6 cut(s)	392, 818, 1004, 1872, 2491, 3078
AjuI	GAANNNNNNNTTGG	6 cut(s)	1136, 1168, 1476, 1508, 2190, 2222
AleI	CACNNNNGTG	1 cut(s)	1785
Alw21I	GWGCWC	4 cut(s)	256, 830, 1013, 1579
Alw26I	GTCTC	8 cut(s)	409, 662, 712, 1713, 1859, 2136, 2949, 3277
Alw44I	GTGCAC	1 cut(s)	1575
AlwI	GGATC	3 cut(s)	1361, 1737, 2200
AlwNI	CAGNNNCTG	2 cut(s)	418, 2482
ApaLI	GTGCAC	1 cut(s)	1575
ApoI	RAATTY	7 cut(s)	932, 1484, 1684, 2278, 2397, 2696, 3016
ArsI	GACNNNNNNTTYG	2 cut(s)	2074, 2106
Asp700I	GAANNNNTTC	1 cut(s)	3102
AspA2I	CCTAGG	1 cut(s)	1294
AspLEI	GCGC	3 cut(s)	1465, 3134, 3289
AspS9I	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3348
AsuC2I	CCSGG	2 cut(s)	371, 3188
AsuHPI	GGTGA	7 cut(s)	381, 884, 1187, 1331, 1874, 2222, 3064
AvaII	GGWCC	2 cut(s)	13, 331
AvrII	CCTAGG	1 cut(s)	1294
AxyI	CCTNAGG	1 cut(s)	2234
BaeGI	GKGCMC	1 cut(s)	1579
BalI	TGGCCA	2 cut(s)	749, 2802
BanI	GGYRCC	1 cut(s)	3161
BanII	GRGCYC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	4 cut(s)	1354, 1386, 2441, 2473
BbrPI	CACGTG	1 cut(s)	2588
BbsI	GAAGAC	2 cut(s)	461, 2084
Bbv12I	GWGCWC	4 cut(s)	256, 830, 1013, 1579
BceAI	ACGGC	2 cut(s)	1634, 2187
BcgI	CGANNNNNNTGC	2 cut(s)	2012, 2046
BciT130I	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 3080
BciVI	GTATCC	1 cut(s)	2265
BclI	TGATCA	1 cut(s)	1216
BcnI	CCSGG	2 cut(s)	371, 3188
BcoDI	GTCTC	8 cut(s)	409, 662, 712, 1713, 1859, 2136, 2949, 3277
BcuI	ACTAGT	1 cut(s)	2179
BfmI	CTRYAG	8 cut(s)	789, 1425, 1932, 1957, 2510, 2576, 2640, 3093
BfoI	RGCGCY	1 cut(s)	3135
BfrI	CTTAAG	2 cut(s)	1120, 2126
BfuAI	ACCTGC	2 cut(s)	537, 989
BfuI	GTATCC	1 cut(s)	2265
BglI	GCCNNNNNGGC	2 cut(s)	404, 3355
BglII	AGATCT	4 cut(s)	690, 1081, 2724, 2905
BlnI	CCTAGG	1 cut(s)	1294
BlpI	GCTNAGC	1 cut(s)	3378
Bme1390I	CCNGG	8 cut(s)	371, 394, 820, 1006, 1874, 2493, 3080, 3188
Bme18I	GGWCC	2 cut(s)	13, 331
BmeRI	GACNNNNNGTC	2 cut(s)	235, 1705
BmgT120I	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3348
BmiI	GGNNCC	9 cut(s)	15, 649, 1038, 1159, 1552, 2497, 2540, 3077, 3163
BmrFI	CCNGG	8 cut(s)	371, 394, 820, 1006, 1874, 2493, 3080, 3188
BmrI	ACTGGG	2 cut(s)	104, 428
BmsI	GCATC	8 cut(s)	630, 726, 815, 1762, 1807, 2004, 2876, 3384
BmuI	ACTGGG	2 cut(s)	104, 428
BpiI	GAAGAC	2 cut(s)	461, 2084
BpmI	CTGGAG	2 cut(s)	1437, 2430
Bpu1102I	GCTNAGC	1 cut(s)	3378
BpuEI	CTTGAG	5 cut(s)	242, 1190, 2645, 2882, 3225
BpuMI	CCSGG	2 cut(s)	371, 3188
Bsa29I	ATCGAT	1 cut(s)	2783
BsaAI	YACGTR	1 cut(s)	2588
BsaBI	GATNNNNATC	2 cut(s)	1210, 2802
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 306, 307, 1391, 1753, 3189
Bse1I	ACTGG	8 cut(s)	99, 423, 1989, 2152, 2476, 2701, 2755, 3438
Bse21I	CCTNAGG	1 cut(s)	2234
Bse3DI	GCAATG	3 cut(s)	611, 1065, 2328
Bse8I	GATNNNNATC	2 cut(s)	1210, 2802
BseBI	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 3080
BseCI	ATCGAT	1 cut(s)	2783
BseGI	GGATG	8 cut(s)	64, 127, 741, 828, 915, 960, 1211, 2499
BseJI	GATNNNNATC	2 cut(s)	1210, 2802
BseLI	CCNNNNNNNGG	6 cut(s)	22, 306, 307, 1391, 1753, 3189
BseMI	GCAATG	3 cut(s)	611, 1065, 2328
BseMII	CTCAG	9 cut(s)	165, 1176, 1611, 2712, 2859, 2975, 3126, 3288, 3369
BseNI	ACTGG	8 cut(s)	99, 423, 1989, 2152, 2476, 2701, 2755, 3438
BseRI	GAGGAG	2 cut(s)	815, 929
BseSI	GKGCMC	1 cut(s)	1579
BseYI	CCCAGC	1 cut(s)	731
BsgI	GTGCAG	2 cut(s)	696, 3160
Bsh1236I	CGCG	2 cut(s)	161, 221
BshNI	GGYRCC	1 cut(s)	3161
BshVI	ATCGAT	1 cut(s)	2783
BsiHKAI	GWGCWC	4 cut(s)	256, 830, 1013, 1579
BsiSI	CCGG	2 cut(s)	370, 3187
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	6 cut(s)	22, 306, 307, 1391, 1753, 3189
BsmAI	GTCTC	8 cut(s)	409, 662, 712, 1713, 1859, 2136, 2949, 3277
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	7 cut(s)	194, 1598, 1768, 2004, 2157, 2204, 3002
Bsp1286I	GDGCHC	4 cut(s)	256, 830, 1013, 1579
Bsp1407I	TGTACA	1 cut(s)	1913
Bsp1720I	GCTNAGC	1 cut(s)	3378
Bsp19I	CCATGG	4 cut(s)	905, 1040, 1385, 2534
BspCNI	CTCAG	9 cut(s)	166, 1177, 1612, 2713, 2858, 2976, 3127, 3287, 3370
BspDI	ATCGAT	1 cut(s)	2783
BspFNI	CGCG	2 cut(s)	161, 221
BspHI	TCATGA	1 cut(s)	2134
BspLI	GGNNCC	9 cut(s)	15, 649, 1038, 1159, 1552, 2497, 2540, 3077, 3163
BspMAI	CTGCAG	4 cut(s)	1429, 1936, 2580, 3097
BspMI	ACCTGC	2 cut(s)	537, 989
BspPI	GGATC	3 cut(s)	1361, 1737, 2200
BspQI	GCTCTTC	2 cut(s)	571, 2250
BspT107I	GGYRCC	1 cut(s)	3161
BspTI	CTTAAG	2 cut(s)	1120, 2126
BsrBI	CCGCTC	1 cut(s)	2629
BsrDI	GCAATG	3 cut(s)	611, 1065, 2328
BsrGI	TGTACA	1 cut(s)	1913
BsrI	ACTGG	8 cut(s)	99, 423, 1989, 2152, 2476, 2701, 2755, 3438
BssNAI	GTATAC	1 cut(s)	1059
BssT1I	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
Bst1107I	GTATAC	1 cut(s)	1059
Bst2UI	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 3080
Bst6I	CTCTTC	5 cut(s)	571, 2133, 2250, 2586, 3093
BstAFI	CTTAAG	2 cut(s)	1120, 2126
BstAPI	GCANNNNNTGC	6 cut(s)	1001, 1471, 1508, 1567, 1673, 1763
BstAUI	TGTACA	1 cut(s)	1913
BstBAI	YACGTR	1 cut(s)	2588
BstDSI	CCRYGG	4 cut(s)	905, 1040, 1385, 2534
BstENI	CCTNNNNNAGG	1 cut(s)	1751
BstF5I	GGATG	8 cut(s)	64, 127, 741, 828, 915, 960, 1211, 2499
BstFNI	CGCG	2 cut(s)	161, 221
BstH2I	RGCGCY	1 cut(s)	3135
BstHHI	GCGC	3 cut(s)	1465, 3134, 3289
BstMAI	GTCTC	8 cut(s)	409, 662, 712, 1713, 1859, 2136, 2949, 3277
BstNI	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 3080
BstNSI	RCATGY	4 cut(s)	479, 1241, 1399, 2469
BstSCI	CCNGG	8 cut(s)	369, 392, 818, 1004, 1872, 2491, 3078, 3186
BstSFI	CTRYAG	8 cut(s)	789, 1425, 1932, 1957, 2510, 2576, 2640, 3093
BstSLI	GKGCMC	1 cut(s)	1579
BstUI	CGCG	2 cut(s)	161, 221
BstV2I	GAAGAC	2 cut(s)	461, 2084
BstX2I	RGATCY	5 cut(s)	690, 1081, 1366, 2724, 2905
BstXI	CCANNNNNNTGG	2 cut(s)	589, 3172
BstYI	RGATCY	5 cut(s)	690, 1081, 1366, 2724, 2905
BstZ17I	GTATAC	1 cut(s)	1059
Bsu15I	ATCGAT	1 cut(s)	2783
Bsu36I	CCTNAGG	1 cut(s)	2234
BsuI	GTATCC	1 cut(s)	2265
BsuTUI	ATCGAT	1 cut(s)	2783
BtgI	CCRYGG	4 cut(s)	905, 1040, 1385, 2534
BtsCI	GGATG	8 cut(s)	64, 127, 741, 828, 915, 960, 1211, 2499
BtsI	GCAGTG	2 cut(s)	552, 1702
BtsIMutI	CAGTG	8 cut(s)	552, 798, 1226, 1702, 1941, 2304, 2483, 3445
BveI	ACCTGC	2 cut(s)	537, 989
CaiI	CAGNNNCTG	2 cut(s)	418, 2482
CciI	TCATGA	1 cut(s)	2134
CfoI	GCGC	3 cut(s)	1465, 3134, 3289
Cfr13I	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3348
ClaI	ATCGAT	1 cut(s)	2783
Csp6I	GTAC	3 cut(s)	597, 978, 1914
CviQI	GTAC	3 cut(s)	597, 978, 1914
DraI	TTTAAA	1 cut(s)	2382
DraIII	CACNNNGTG	1 cut(s)	1673
DriI	GACNNNNNGTC	2 cut(s)	235, 1705
EaeI	YGGCCR	3 cut(s)	747, 2800, 3356
Eam1104I	CTCTTC	5 cut(s)	571, 2133, 2250, 2586, 3093
Eam1105I	GACNNNNNGTC	2 cut(s)	235, 1705
EarI	CTCTTC	5 cut(s)	571, 2133, 2250, 2586, 3093
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
Eco147I	AGGCCT	1 cut(s)	3373
Eco24I	GRGCYC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	2213
Eco47I	GGWCC	2 cut(s)	13, 331
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	8 cut(s)	474, 1062, 1503, 2030, 2078, 2328, 2973, 2974
Eco72I	CACGTG	1 cut(s)	2588
Eco81I	CCTNAGG	1 cut(s)	2234
EcoICRI	GAGCTC	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	1751
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRI	GAATTC	2 cut(s)	1484, 3016
EcoRII	CCWGG	6 cut(s)	392, 818, 1004, 1872, 2491, 3078
EcoRV	GATATC	1 cut(s)	2213
EcoT14I	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
EcoT22I	ATGCAT	1 cut(s)	3399
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
FalI	AAGNNNNNCTT	4 cut(s)	335, 367, 3090, 3122
FaqI	GGGAC	1 cut(s)	223
FauI	CCCGC	3 cut(s)	214, 3121, 3191
FauNDI	CATATG	3 cut(s)	1713, 2250, 2392
FbaI	TGATCA	1 cut(s)	1216
FblI	GTMKAC	2 cut(s)	1058, 1960
FokI	GGATG	8 cut(s)	51, 134, 748, 835, 922, 947, 1218, 2486
FriOI	GRGCYC	1 cut(s)	256
FspI	TGCGCA	1 cut(s)	1464
GlaI	GCGC	3 cut(s)	1464, 3133, 3288
GsaI	CCCAGC	1 cut(s)	735
GsuI	CTGGAG	2 cut(s)	1437, 2430
HaeII	RGCGCY	1 cut(s)	3135
HapII	CCGG	2 cut(s)	370, 3187
HhaI	GCGC	3 cut(s)	1465, 3134, 3289
Hin6I	GCGC	3 cut(s)	1463, 3132, 3287
HinP1I	GCGC	3 cut(s)	1463, 3132, 3287
HindIII	AAGCTT	6 cut(s)	681, 1301, 1437, 1505, 3114, 3246
HpaII	CCGG	2 cut(s)	370, 3187
HphI	GGTGA	7 cut(s)	381, 884, 1187, 1331, 1874, 2222, 3064
Hpy99I	CGWCG	2 cut(s)	42, 2354
HpyCH4IV	ACGT	3 cut(s)	976, 2349, 2587
HpySE526I	ACGT	3 cut(s)	976, 2349, 2587
HspAI	GCGC	3 cut(s)	1463, 3132, 3287
Ksp22I	TGATCA	1 cut(s)	1216
LguI	GCTCTTC	2 cut(s)	571, 2250
LweI	GCATC	8 cut(s)	630, 726, 815, 1762, 1807, 2004, 2876, 3384
MaeII	ACGT	3 cut(s)	976, 2349, 2587
MaeIII	GTNAC	7 cut(s)	422, 872, 1072, 1164, 1175, 1697, 2117
MbiI	CCGCTC	1 cut(s)	2629
MfeI	CAATTG	3 cut(s)	1259, 2367, 3267
MflI	RGATCY	5 cut(s)	690, 1081, 1366, 2724, 2905
MhlI	GDGCHC	4 cut(s)	256, 830, 1013, 1579
MlsI	TGGCCA	2 cut(s)	749, 2802
MluNI	TGGCCA	2 cut(s)	749, 2802
MmeI	TCCRAC	6 cut(s)	61, 115, 309, 1411, 1513, 2900
Mox20I	TGGCCA	2 cut(s)	749, 2802
Mph1103I	ATGCAT	1 cut(s)	3399
MroXI	GAANNNNTTC	1 cut(s)	3102
MscI	TGGCCA	2 cut(s)	749, 2802
MseI	TTAA	7 cut(s)	1121, 2127, 2226, 2273, 2381, 3011, 3234
MslI	CAYNNNNRTG	6 cut(s)	69, 778, 1785, 2476, 2670, 3170
Msp20I	TGGCCA	2 cut(s)	749, 2802
MspA1I	CMGCKG	2 cut(s)	1403, 1937
MspCI	CTTAAG	2 cut(s)	1120, 2126
MspI	CCGG	2 cut(s)	370, 3187
MspR9I	CCNGG	8 cut(s)	371, 394, 820, 1006, 1874, 2493, 3080, 3188
MunI	CAATTG	3 cut(s)	1259, 2367, 3267
Mva1269I	GAATGC	7 cut(s)	194, 1598, 1768, 2004, 2157, 2204, 3002
MvaI	CCWGG	6 cut(s)	394, 820, 1006, 1874, 2493, 3080
MvnI	CGCG	2 cut(s)	161, 221
NciI	CCSGG	2 cut(s)	371, 3188
NcoI	CCATGG	4 cut(s)	905, 1040, 1385, 2534
NdeI	CATATG	3 cut(s)	1713, 2250, 2392
NlaIV	GGNNCC	9 cut(s)	15, 649, 1038, 1159, 1552, 2497, 2540, 3077, 3163
NmeAIII	GCCGAG	1 cut(s)	2552
NmuCI	GTSAC	4 cut(s)	872, 1175, 1697, 2117
NsbI	TGCGCA	1 cut(s)	1464
NsiI	ATGCAT	1 cut(s)	3399
NspI	RCATGY	4 cut(s)	479, 1241, 1399, 2469
OliI	CACNNNNGTG	1 cut(s)	1785
PagI	TCATGA	1 cut(s)	2134
PasI	CCCWGGG	1 cut(s)	393
PceI	AGGCCT	1 cut(s)	3373
PciSI	GCTCTTC	2 cut(s)	571, 2250
PctI	GAATGC	7 cut(s)	194, 1598, 1768, 2004, 2157, 2204, 3002
PdmI	GAANNNNTTC	1 cut(s)	3102
PfeI	GAWTC	4 cut(s)	944, 1525, 1988, 3025
PmaCI	CACGTG	1 cut(s)	2588
PmlI	CACGTG	1 cut(s)	2588
Ppu21I	YACGTR	1 cut(s)	2588
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	6 cut(s)	392, 818, 1004, 1872, 2491, 3078
PspCI	CACGTG	1 cut(s)	2588
PspFI	CCCAGC	1 cut(s)	731
PspGI	CCWGG	6 cut(s)	392, 818, 1004, 1872, 2491, 3078
PspN4I	GGNNCC	9 cut(s)	15, 649, 1038, 1159, 1552, 2497, 2540, 3077, 3163
PspPI	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3348
PstI	CTGCAG	4 cut(s)	1429, 1936, 2580, 3097
PstNI	CAGNNNCTG	2 cut(s)	418, 2482
PsuI	RGATCY	5 cut(s)	690, 1081, 1366, 2724, 2905
PvuII	CAGCTG	2 cut(s)	1403, 1937
RsaI	GTAC	3 cut(s)	598, 979, 1915
RsaNI	GTAC	3 cut(s)	597, 978, 1914
RseI	CAYNNNNRTG	6 cut(s)	69, 778, 1785, 2476, 2670, 3170
SacI	GAGCTC	1 cut(s)	256
SapI	GCTCTTC	2 cut(s)	571, 2250
SaqAI	TTAA	7 cut(s)	1121, 2127, 2226, 2273, 2381, 3011, 3234
Sau96I	GGNCC	7 cut(s)	13, 61, 331, 396, 1036, 1738, 3348
ScrFI	CCNGG	8 cut(s)	371, 394, 820, 1006, 1874, 2493, 3080, 3188
SduI	GDGCHC	4 cut(s)	256, 830, 1013, 1579
SfaNI	GCATC	8 cut(s)	630, 726, 815, 1762, 1807, 2004, 2876, 3384
SfcI	CTRYAG	8 cut(s)	789, 1425, 1932, 1957, 2510, 2576, 2640, 3093
SfiI	GGCCNNNNNGGCC	1 cut(s)	3355
SinI	GGWCC	2 cut(s)	13, 331
SmiMI	CAYNNNNRTG	6 cut(s)	69, 778, 1785, 2476, 2670, 3170
SmlI	CTYRAG	7 cut(s)	257, 1120, 1169, 2126, 2624, 2897, 3240
SmoI	CTYRAG	7 cut(s)	257, 1120, 1169, 2126, 2624, 2897, 3240
SpeI	ACTAGT	1 cut(s)	2179
SseBI	AGGCCT	1 cut(s)	3373
SspI	AATATT	1 cut(s)	606
SstI	GAGCTC	1 cut(s)	256
StuI	AGGCCT	1 cut(s)	3373
StyD4I	CCNGG	8 cut(s)	369, 392, 818, 1004, 1872, 2491, 3078, 3186
StyI	CCWWGG	7 cut(s)	750, 905, 1040, 1200, 1294, 1385, 2534
TaiI	ACGT	3 cut(s)	979, 2352, 2590
TaqI	TCGA	5 cut(s)	585, 1815, 2352, 2783, 3478
TatI	WGTACW	1 cut(s)	1913
TauI	GCSGC	4 cut(s)	140, 161, 2632, 3361
TfiI	GAWTC	4 cut(s)	944, 1525, 1988, 3025
Tru1I	TTAA	7 cut(s)	1121, 2127, 2226, 2273, 2381, 3011, 3234
Tru9I	TTAA	7 cut(s)	1121, 2127, 2226, 2273, 2381, 3011, 3234
TscAI	CASTG	8 cut(s)	559, 798, 1233, 1702, 1948, 2311, 2483, 3445
TseFI	GTSAC	4 cut(s)	872, 1175, 1697, 2117
Tsp45I	GTSAC	4 cut(s)	872, 1175, 1697, 2117
TspGWI	ACGGA	5 cut(s)	26, 1733, 2822, 3037, 3326
TspRI	CASTG	8 cut(s)	559, 798, 1233, 1702, 1948, 2311, 2483, 3445
Vha464I	CTTAAG	2 cut(s)	1120, 2126
VneI	GTGCAC	1 cut(s)	1575
VpaK11BI	GGWCC	2 cut(s)	13, 331
XagI	CCTNNNNNAGG	1 cut(s)	1751
XapI	RAATTY	7 cut(s)	932, 1484, 1684, 2278, 2397, 2696, 3016
XbaI	TCTAGA	2 cut(s)	1768, 2074
XceI	RCATGY	4 cut(s)	479, 1241, 1399, 2469
XmaJI	CCTAGG	1 cut(s)	1294
XmiI	GTMKAC	2 cut(s)	1058, 1960
XmnI	GAANNNNTTC	1 cut(s)	3102
Zsp2I	ATGCAT	1 cut(s)	3399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.