MD17G1058000.v1.1

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014326
Physical Location & Seq
Forward (+)
4729175 .. 4730995
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1058000.v1.1.491

Sequence Viewer

Length: 639 bp
ATGGCGGTTTCGATAACGGCTCTCACGTCATCCCTATCCTCTCTCTCGTTTTCCTCCCACGTAGCTCAGAAGCCCAGCATTGTGTCGTTTCCCGGCTCCAAATCAGTGTCTGTTTCGCACGTGTGCGGAGCCCCCACACGTGCACCTCGTCTGGTGGTGGCTTCCGTCGCGGCAGCTCCTCCAACGGAAGTGGTGGAGACTGAAAACCTCAAGAAATACGTGAAATCGAGGCTTCCCGGCGGCTTTGCGGCTCAGACAATCATTGGCACCGGTCGCCGGAAATGTGCGATTGCTCGTGTTGTACTCCAGGAGGGCACCGGAAAAGTTATCATCAACTATCGCGACGCCAAGGAATATCTGCAAGGCAACCCGTTGTGGCTACAGTACGTAAGAGTACCGTTGGTTACTTTAGGATACGAAAGTGGGTACGACGTGTTTGTCAAGTCTCATGGTGGTGGCCTTTCTGGTCAGGCGCAGGCGATATCCCTTGGCATTGCTCGAGCTTTGCTAAAGGTCAGCGAAGACCATAGAAGACCTCTCAGAAAGGAAGGGCTGCTGACCAGAGACGCCAGAGTAGTTGAAAGGAAGAAGCCTGGTCTCAAGAAAGCTCGCAAGGCCCCTCAGTTTTCAAAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

213

Amino Acids

22.8

Weight (kDa)

10.51

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 91 - 212 4.7e-42 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74970
fragaria_vesca FvH4_5g26680
malus_domestica MD09G1065100.v1.1 MD17G1058000.v1.1
prunus_persica Prupe.4G129500_v2.0.a1
pyrus_communis pycom111g05500 pycom17g05810
rosa_chinensis RchiOBHm_Chr7g0217571
rosa_laevigata RLG00000002460
rosa_multiflora Rmu_sc0006161.1_g000004
rosa_roxburghii Rroxscaffold_3G00241860
rosa_rugosa Rorug07G0170300
rosa_samantha Rh7AG309900 Rh7BG301100 Rh7CG329100 Rh7DG309600
rosa_wichuraiana Rw7G026290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
AccB1I GGYRCC 2 cut(s) 266, 314
AccII CGCG 2 cut(s) 170, 342
AciI CCGC 5 cut(s) 5, 126, 170, 240, 248
AcvI CACGTG 2 cut(s) 121, 140
AcyI GRCGYC 2 cut(s) 345, 567
AfaI GTAC 4 cut(s) 303, 386, 396, 428
AfiI CCNNNNNNNGG 1 cut(s) 276
AflIII ACRYGT 3 cut(s) 120, 137, 432
AgeI ACCGGT 1 cut(s) 269
AgsI TTSAA 2 cut(s) 581, 630
AjiI CACGTC 2 cut(s) 27, 433
AjnI CCWGG 2 cut(s) 306, 592
AluBI AGCT 4 cut(s) 65, 176, 503, 608
AluI AGCT 4 cut(s) 65, 176, 503, 608
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 4 cut(s) 191, 450, 558, 602
Alw44I GTGCAC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 2 cut(s) 457, 615
ApaLI GTGCAC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 173, 553
AsiGI ACCGGT 1 cut(s) 269
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 616
AsuC2I CCSGG 2 cut(s) 93, 237
AvaI CYCGRG 1 cut(s) 498
BaeGI GKGCMC 2 cut(s) 145, 317
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BanI GGYRCC 2 cut(s) 266, 314
BanII GRGCYC 1 cut(s) 133
BauI CACGAG 1 cut(s) 294
BbrPI CACGTG 2 cut(s) 121, 140
BbsI GAAGAC 2 cut(s) 528, 538
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 185, 540
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 308, 594
BciVI GTATCC 1 cut(s) 407
BcnI CCSGG 2 cut(s) 93, 237
BcoDI GTCTC 4 cut(s) 191, 450, 558, 602
BfmI CTRYAG 1 cut(s) 380
BfuI GTATCC 1 cut(s) 407
BisI GCNGC 5 cut(s) 171, 174, 241, 249, 554
BlsI GCNGC 5 cut(s) 172, 175, 242, 250, 555
Bme1390I CCNGG 4 cut(s) 93, 237, 308, 594
BmeT110I CYCGRG 1 cut(s) 498
BmgBI CACGTC 2 cut(s) 27, 433
BmgT120I GGNCC 1 cut(s) 616
BmiI GGNNCC 5 cut(s) 97, 130, 268, 316, 618
BmrFI CCNGG 4 cut(s) 93, 237, 308, 594
BpiI GAAGAC 2 cut(s) 528, 538
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 194, 584
BpuMI CCSGG 2 cut(s) 93, 237
BsaAI YACGTR 5 cut(s) 61, 121, 140, 220, 388
BsaHI GRCGYC 2 cut(s) 345, 567
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 348, 487
BsaWI WCCGGW 2 cut(s) 269, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 2 cut(s) 308, 594
BseDI CCNNGG 2 cut(s) 348, 487
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 4 cut(s) 80, 266, 553, 635
BseRI GAGGAG 1 cut(s) 168
BseSI GKGCMC 2 cut(s) 145, 317
BseXI GCAGC 2 cut(s) 185, 540
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 170, 342
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 459, 617
BshNI GGYRCC 2 cut(s) 266, 314
BshTI ACCGGT 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 5 cut(s) 93, 237, 270, 277, 318
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 4 cut(s) 191, 450, 558, 602
BsmBI CGTCTC 1 cut(s) 558
BsnI GGCC 2 cut(s) 459, 617
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 3 cut(s) 133, 145, 317
Bsp68I TCGCGA 1 cut(s) 342
BspACI CCGC 5 cut(s) 5, 126, 170, 240, 248
BspANI GGCC 2 cut(s) 459, 617
BspCNI CTCAG 4 cut(s) 79, 265, 552, 634
BspFNI CGCG 2 cut(s) 170, 342
BspLI GGNNCC 5 cut(s) 97, 130, 268, 316, 618
BspT107I GGYRCC 2 cut(s) 266, 314
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 348, 487
BssNI GRCGYC 2 cut(s) 345, 567
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 348, 487
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 308, 594
Bst4CI ACNGT 2 cut(s) 384, 399
BstACI GRCGYC 2 cut(s) 345, 567
BstBAI YACGTR 5 cut(s) 61, 121, 140, 220, 388
BstC8I GCNNGC 2 cut(s) 477, 610
BstDEI CTNAG 4 cut(s) 66, 252, 539, 621
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 2 cut(s) 170, 342
BstHHI GCGC 1 cut(s) 475
BstMAI GTCTC 4 cut(s) 191, 450, 558, 602
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 3 cut(s) 167, 273, 614
BstNI CCWGG 2 cut(s) 308, 594
BstSCI CCNGG 4 cut(s) 91, 235, 306, 592
BstSFI CTRYAG 1 cut(s) 380
BstSLI GKGCMC 2 cut(s) 145, 317
BstSNI TACGTA 1 cut(s) 388
BstUI CGCG 2 cut(s) 170, 342
BstV1I GCAGC 2 cut(s) 185, 540
BstV2I GAAGAC 2 cut(s) 528, 538
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 459, 617
BtrI CACGTC 2 cut(s) 27, 433
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 111
BtuMI TCGCGA 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 477, 610
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 616
CseI GACGC 2 cut(s) 353, 575
Csp6I GTAC 4 cut(s) 302, 385, 395, 427
CspAI ACCGGT 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 1 cut(s) 449
CviQI GTAC 4 cut(s) 302, 385, 395, 427
DdeI CTNAG 4 cut(s) 66, 252, 539, 621
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
Eco105I TACGTA 1 cut(s) 388
Eco130I CCWWGG 2 cut(s) 348, 487
Eco24I GRGCYC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 602
Eco32I GATATC 1 cut(s) 483
Eco72I CACGTG 2 cut(s) 121, 140
Eco88I CYCGRG 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 616
EcoRII CCWGG 2 cut(s) 306, 592
EcoRV GATATC 1 cut(s) 483
EcoT14I CCWWGG 2 cut(s) 348, 487
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 348, 487
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 1 cut(s) 452
FaiI YATR 2 cut(s) 450, 528
FatI CATG 1 cut(s) 448
Fnu4HI GCNGC 5 cut(s) 171, 174, 241, 249, 554
FokI GGATG 1 cut(s) 16
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 5 cut(s) 171, 174, 241, 249, 554
GlaI GCGC 1 cut(s) 474
GluI GCNGC 5 cut(s) 171, 174, 241, 249, 554
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 2 cut(s) 459, 617
HapII CCGG 5 cut(s) 93, 237, 270, 277, 318
HgaI GACGC 2 cut(s) 353, 575
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 2 cut(s) 345, 567
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HpaII CCGG 5 cut(s) 93, 237, 270, 277, 318
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 3 cut(s) 69, 255, 542
Hpy188III TCNNGA 3 cut(s) 211, 341, 601
Hpy8I GTNNAC 1 cut(s) 143
Hpy99I CGWCG 3 cut(s) 170, 347, 434
HpyAV CCTTC 1 cut(s) 542
HpyCH4III ACNGT 2 cut(s) 384, 399
HpyCH4IV ACGT 7 cut(s) 26, 60, 120, 139, 219, 387, 432
HpyCH4V TGCA 2 cut(s) 143, 361
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 273, 614
HpyF3I CTNAG 4 cut(s) 66, 252, 539, 621
HpySE526I ACGT 7 cut(s) 26, 60, 120, 139, 219, 387, 432
Hsp92I GRCGYC 2 cut(s) 345, 567
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 1 cut(s) 473
LmnI GCTCC 3 cut(s) 101, 128, 181
Lsp1109I GCAGC 2 cut(s) 185, 540
MaeII ACGT 7 cut(s) 26, 60, 120, 139, 219, 387, 432
MaeIII GTNAC 1 cut(s) 403
MboII GAAGA 3 cut(s) 533, 543, 598
MhlI GDGCHC 3 cut(s) 133, 145, 317
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 9 cut(s) 49, 64, 156, 189, 218, 222, 304, 546, 630
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 5 cut(s) 93, 237, 270, 277, 318
MspR9I CCNGG 4 cut(s) 93, 237, 308, 594
MvaI CCWGG 2 cut(s) 308, 594
MvnI CGCG 2 cut(s) 170, 342
MwoI GCNNNNNNNGC 3 cut(s) 167, 273, 614
NciI CCSGG 2 cut(s) 93, 237
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 5 cut(s) 97, 130, 268, 316, 618
NruI TCGCGA 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 498
PcsI WCGNNNNNNNCGW 2 cut(s) 23, 145
PfoI TCCNGGA 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 269
PkrI GCNGC 5 cut(s) 172, 175, 242, 250, 555
PmaCI CACGTG 2 cut(s) 121, 140
PmlI CACGTG 2 cut(s) 121, 140
Ppu21I YACGTR 5 cut(s) 61, 121, 140, 220, 388
Psp6I CCWGG 2 cut(s) 306, 592
PspCI CACGTG 2 cut(s) 121, 140
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 2 cut(s) 306, 592
PspN4I GGNNCC 5 cut(s) 97, 130, 268, 316, 618
PspPI GGNCC 1 cut(s) 616
PspXI VCTCGAGB 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 110
RruI TCGCGA 1 cut(s) 342
RsaI GTAC 4 cut(s) 303, 386, 396, 428
RsaNI GTAC 4 cut(s) 302, 385, 395, 427
RseI CAYNNNNRTG 1 cut(s) 453
SatI GCNGC 5 cut(s) 171, 174, 241, 249, 554
Sau96I GGNCC 1 cut(s) 616
ScrFI CCNGG 4 cut(s) 93, 237, 308, 594
SduI GDGCHC 3 cut(s) 133, 145, 317
SfcI CTRYAG 1 cut(s) 380
Sfr274I CTCGAG 1 cut(s) 498
SlaI CTCGAG 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 209, 498, 599
SmoI CTYRAG 3 cut(s) 209, 498, 599
SnaBI TACGTA 1 cut(s) 388
SsiI CCGC 5 cut(s) 5, 126, 170, 240, 248
StyD4I CCNGG 4 cut(s) 91, 235, 306, 592
StyI CCWWGG 2 cut(s) 348, 487
TaaI ACNGT 2 cut(s) 384, 399
TaiI ACGT 7 cut(s) 29, 63, 123, 142, 222, 390, 435
TaqI TCGA 3 cut(s) 11, 227, 499
TatI WGTACW 1 cut(s) 301
TauI GCSGC 3 cut(s) 173, 243, 251
TscAI CASTG 1 cut(s) 111
TseI GCWGC 2 cut(s) 173, 553
TspGWI ACGGA 2 cut(s) 154, 200
TspRI CASTG 1 cut(s) 111
VneI GTGCAC 1 cut(s) 141
XhoI CTCGAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.