AT1G75000

Elongation of fatty acids protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017092
Physical Location & Seq
Forward (+)
28163344 .. 28164814
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75000.1

Sequence Viewer

Length: 846 bp
ATGACGACGTTCAATTACTATTTAGCGGAGCATCCAACGATCGTTAACTTCCGTTGGAGTCCAACCCAATCCTACGCCTCCACGTGGTCTTTCCTCTTCACCGCCGTCTCATCTTACATCATCGCCGCCGTCACTCTCCACCTCCTCCTCCTCATAACCCTCTCCCTCTCTAACCGCCGCCGCGGATTCTCCCTCGGTCCAATCCCAGCTCTACACAGCTTAACCATTTCCATAATCTCCGCCGTCATATTCGTCGGTATCCTCCTCTCCGCCGCAGCAGAGATCAGAGACACGCGGTGGCTATGGCGTCGCACCCGCACCACTGCTCTCCAATGGTTCCTCTGCTTTCCCGTAGGTACACGCGCTTCGGGACGCGTGTTCTTCTGGTCATACGCGTTTTACCTCTCAAGATTCCTTCACTTGTTCCGTACTTTCTTCTCCGTGATACGACGTCGTAAACTCAGCTTCTTCCAGCTTATCAACCAGTCTTCTCTTCTCTGTATCTCCTTCCTCTGGCTCGAATATTCCCAATCCTTTCAGGTGGTAGCGATACTATTAACGACCGTTTCGTACGCCGTTGTGTACGGTTACAGGTTCTGGACGGAGATTGGGTTGCGTGGCGCGTGTTTTCCGTTTGTCGGAAACTGTCAAGCCATTCTGTTAGGGTGTATGACGGTTTGCCACGTAGGCGTACTCTGTATACACCTGGTCAAACGCGGCGGTTGTAACGGTATCGGTGCTTGGTTGTTTAACTCTGTTCTTAACGCCGTTATCACGTTGCTCTACTTGAAGTTTTATTGCAAGACGCGTTCAATGATGACCAAGGCTAATCACAACACCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELO

Protein Analysis

281

Amino Acids

32.13

Weight (kDa)

10.18

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELO PF01151 26 - 269 3.2e-36 GNS1/SUR4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75000
fragaria_vesca FvH4_2g40350
prunus_persica Prupe.1G383900_v2.0.a1
pyrus_communis pycom15g02860
rosa_chinensis RchiOBHm_Chr6g0300401
rosa_laevigata RLG00000011341
rosa_multiflora Rmu_sc0001670.1_g000009
rosa_roxburghii Rroxscaffold_7G00167800
rosa_rugosa Rorug06G0295700
rosa_samantha Rh6AG408400 Rh6BG415700 Rh6DG408700
rosa_wichuraiana Rw6G035720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 454
AccI GTMKAC 1 cut(s) 700
AccII CGCG 8 cut(s) 183, 295, 363, 375, 395, 623, 717, 808
AcvI CACGTG 1 cut(s) 84
AcyI GRCGYC 2 cut(s) 307, 451
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 5 cut(s) 358, 430, 572, 584, 693
AfiI CCNNNNNNNGG 3 cut(s) 84, 513, 638
AflIII ACRYGT 3 cut(s) 373, 393, 806
AgsI TTSAA 3 cut(s) 13, 790, 813
AjnI CCWGG 1 cut(s) 705
AluBI AGCT 4 cut(s) 209, 219, 465, 475
AluI AGCT 4 cut(s) 209, 219, 465, 475
Alw26I GTCTC 2 cut(s) 112, 282
AlwNI CAGNNNCTG 1 cut(s) 597
ApeKI GCWGC 1 cut(s) 275
AspLEI GCGC 2 cut(s) 365, 623
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 197
BarI GAAGNNNNNNTAC 2 cut(s) 349, 381
BbrPI CACGTG 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 287
BceAI ACGGC 5 cut(s) 89, 113, 227, 560, 752
BciT130I CCWGG 1 cut(s) 707
BciVI GTATCC 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 112, 282
BfuI GTATCC 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 687
BisI GCNGC 6 cut(s) 126, 178, 181, 273, 276, 718
BlsI GCNGC 6 cut(s) 127, 179, 182, 274, 277, 719
Bme1390I CCNGG 1 cut(s) 707
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 707
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 391
BsaAI YACGTR 2 cut(s) 84, 685
BsaHI GRCGYC 2 cut(s) 307, 451
BsaJI CCNNGG 3 cut(s) 181, 193, 822
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 513, 638
Bse1I ACTGG 1 cut(s) 484
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 3 cut(s) 181, 193, 822
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 3 cut(s) 84, 513, 638
BseMII CTCAG 1 cut(s) 475
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 4 cut(s) 134, 137, 140, 254
BseXI GCAGC 1 cut(s) 287
BseYI CCCAGC 1 cut(s) 205
Bsh1236I CGCG 8 cut(s) 183, 295, 363, 375, 395, 623, 717, 808
Bsh1285I CGRYCG 2 cut(s) 42, 564
BsiEI CGRYCG 2 cut(s) 42, 564
BsiWI CGTACG 1 cut(s) 570
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 3 cut(s) 84, 513, 638
BsmAI GTCTC 2 cut(s) 112, 282
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 384
Bsp143I GATC 2 cut(s) 39, 282
BspCNI CTCAG 1 cut(s) 474
BspFNI CGCG 8 cut(s) 183, 295, 363, 375, 395, 623, 717, 808
BspLI GGNNCC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 3 cut(s) 181, 193, 822
BssMI GATC 2 cut(s) 39, 282
BssNAI GTATAC 1 cut(s) 701
BssNI GRCGYC 2 cut(s) 307, 451
BssT1I CCWWGG 1 cut(s) 822
Bst1107I GTATAC 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 5 cut(s) 565, 587, 647, 676, 731
Bst6I CTCTTC 2 cut(s) 101, 498
BstACI GRCGYC 2 cut(s) 307, 451
BstBAI YACGTR 2 cut(s) 84, 685
BstDEI CTNAG 1 cut(s) 461
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 8 cut(s) 183, 295, 363, 375, 395, 623, 717, 808
BstHHI GCGC 2 cut(s) 365, 623
BstKTI GATC 2 cut(s) 42, 285
BstMAI GTCTC 2 cut(s) 112, 282
BstMBI GATC 2 cut(s) 39, 282
BstMCI CGRYCG 2 cut(s) 42, 564
BstMWI GCNNNNNNNGC 1 cut(s) 687
BstNI CCWGG 1 cut(s) 707
BstSCI CCNGG 1 cut(s) 705
BstUI CGCG 8 cut(s) 183, 295, 363, 375, 395, 623, 717, 808
BstV1I GCAGC 1 cut(s) 287
BstV2I GAAGAC 1 cut(s) 480
BstZ17I GTATAC 1 cut(s) 701
BsuI GTATCC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
CaiI CAGNNNCTG 1 cut(s) 597
CfoI GCGC 2 cut(s) 365, 623
Cfr13I GGNCC 1 cut(s) 197
Cfr42I CCGCGG 1 cut(s) 184
CseI GACGC 3 cut(s) 296, 381, 814
CsiI ACCWGGT 1 cut(s) 705
Csp6I GTAC 5 cut(s) 357, 429, 571, 583, 692
CviJI RGCY 8 cut(s) 209, 219, 301, 465, 475, 517, 653, 827
CviKI_1 RGCY 8 cut(s) 209, 219, 301, 465, 475, 517, 653, 827
CviQI GTAC 5 cut(s) 357, 429, 571, 583, 692
DdeI CTNAG 1 cut(s) 461
DpnI GATC 2 cut(s) 41, 284
DpnII GATC 2 cut(s) 39, 282
DraIII CACNNNGTG 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 101, 498
EarI CTCTTC 2 cut(s) 101, 498
EciI GGCGGA 2 cut(s) 229, 259
Eco130I CCWWGG 1 cut(s) 822
Eco47I GGWCC 1 cut(s) 197
Eco72I CACGTG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 822
Esp3I CGTCTC 1 cut(s) 112
FaiI YATR 8 cut(s) 155, 233, 248, 304, 391, 671, 701, 844
FaqI GGGAC 1 cut(s) 384
FauI CCCGC 1 cut(s) 323
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 6 cut(s) 126, 178, 181, 273, 276, 718
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 6 cut(s) 126, 178, 181, 273, 276, 718
GlaI GCGC 2 cut(s) 364, 622
GluI GCNGC 6 cut(s) 126, 178, 181, 273, 276, 718
GsaI CCCAGC 1 cut(s) 209
HgaI GACGC 3 cut(s) 296, 381, 814
HhaI GCGC 2 cut(s) 365, 623
Hin1I GRCGYC 2 cut(s) 307, 451
Hin6I GCGC 2 cut(s) 363, 621
HinP1I GCGC 2 cut(s) 363, 621
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 3 cut(s) 58, 186, 411
HpaI GTTAAC 1 cut(s) 46
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 5 cut(s) 46, 359, 458, 583, 701
Hpy188I TCNGA 2 cut(s) 287, 641
Hpy188III TCNNGA 3 cut(s) 369, 408, 598
Hpy8I GTNNAC 5 cut(s) 46, 359, 458, 583, 701
Hpy99I CGWCG 5 cut(s) 10, 257, 312, 453, 456
HpyAV CCTTC 2 cut(s) 425, 517
HpyCH4III ACNGT 5 cut(s) 565, 587, 647, 676, 731
HpyCH4IV ACGT 5 cut(s) 8, 83, 451, 684, 776
HpyCH4V TGCA 1 cut(s) 801
HpyF10VI GCNNNNNNNGC 1 cut(s) 687
HpyF3I CTNAG 1 cut(s) 461
HpySE526I ACGT 5 cut(s) 8, 83, 451, 684, 776
Hsp92I GRCGYC 2 cut(s) 307, 451
HspAI GCGC 2 cut(s) 363, 621
KspAI GTTAAC 1 cut(s) 46
KspI CCGCGG 1 cut(s) 184
Kzo9I GATC 2 cut(s) 39, 282
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 40
MabI ACCWGGT 1 cut(s) 705
MaeII ACGT 5 cut(s) 8, 83, 451, 684, 776
MaeIII GTNAC 3 cut(s) 130, 587, 725
MalI GATC 2 cut(s) 41, 284
MboI GATC 2 cut(s) 39, 282
MboII GAAGA 6 cut(s) 88, 373, 427, 460, 480, 485
MluCI AATT 1 cut(s) 13
MluI ACGCGT 3 cut(s) 373, 393, 806
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 4 cut(s) 35, 59, 86, 619
MseI TTAA 5 cut(s) 45, 221, 557, 750, 762
MspA1I CMGCKG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 707
MvaI CCWGG 1 cut(s) 707
MvnI CGCG 8 cut(s) 183, 295, 363, 375, 395, 623, 717, 808
MwoI GCNNNNNNNGC 1 cut(s) 687
NdeII GATC 2 cut(s) 39, 282
NlaIV GGNNCC 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 566
PfeI GAWTC 2 cut(s) 186, 411
Pfl23II CGTACG 1 cut(s) 570
PkrI GCNGC 6 cut(s) 127, 179, 182, 274, 277, 719
Ple19I CGATCG 1 cut(s) 42
PleI GAGTC 1 cut(s) 66
PmaCI CACGTG 1 cut(s) 84
PmlI CACGTG 1 cut(s) 84
PpsI GAGTC 1 cut(s) 66
Ppu21I YACGTR 2 cut(s) 84, 685
Psp6I CCWGG 1 cut(s) 705
PspCI CACGTG 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 1 cut(s) 705
PspLI CGTACG 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 597
PvuI CGATCG 1 cut(s) 42
RsaI GTAC 5 cut(s) 358, 430, 572, 584, 693
RsaNI GTAC 5 cut(s) 357, 429, 571, 583, 692
SacII CCGCGG 1 cut(s) 184
SaqAI TTAA 5 cut(s) 45, 221, 557, 750, 762
SatI GCNGC 6 cut(s) 126, 178, 181, 273, 276, 718
Sau3AI GATC 2 cut(s) 39, 282
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 707
SexAI ACCWGGT 1 cut(s) 705
SfaNI GCATC 1 cut(s) 40
Sfr303I CCGCGG 1 cut(s) 184
SgrBI CCGCGG 1 cut(s) 184
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 1 cut(s) 13
SspI AATATT 1 cut(s) 524
StyD4I CCNGG 1 cut(s) 705
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 5 cut(s) 565, 587, 647, 676, 731
TaiI ACGT 5 cut(s) 11, 86, 454, 687, 779
TaqI TCGA 1 cut(s) 519
TaqII GACCGA 1 cut(s) 185
TasI AATT 1 cut(s) 13
TauI GCSGC 5 cut(s) 128, 180, 183, 275, 720
TfiI GAWTC 2 cut(s) 186, 411
Tru1I TTAA 5 cut(s) 45, 221, 557, 750, 762
Tru9I TTAA 5 cut(s) 45, 221, 557, 750, 762
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 130
TspGWI ACGGA 5 cut(s) 41, 416, 430, 617, 621
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 700
ZraI GACGTC 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.