Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017092

Physical Location & Seq

Genomic Coordinates Reverse (-)

8832974 .. 8833886

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCAGCTTATGAAGACGTTGCACGGCATCAAGTACTGGCTAACAGAGCACCCTGCCATTGTAAACTTCCGTTGGAGTTCGACCCAATCATGGGGCTCCACGTGGTCTTTCCTCTTCACCGTCATCCCCGCCTACCTCGCCGTCGCCGTTTCCCTCCACCTCATCCTCACCCTCTTCCGCCGCCGCCGTCCGGTGCCGCTCGGCCCAATCCCGGCCGCGCACAGCCTCCTGATGGCTTTAGTCTCCGCCGTGATCTTCGTCGGCATCCTCCTCTCCTCCGCCGCAGAGATTCGCGACACGCGGTGGCTCTGGCGGCGCACCAAGACCACCCCCGTTCCAGTGGCTCCTCTGCTTCCCTCTCGGCACGCGCCCCTCCGGGCGCGTCTTCTTCTGGTCCTACGTCTTCTACCTATCCCGGTTCCTCCACCTGTTCCGCACGTTCTTCACCATCCTCCGGCGCCGGCGACTCTCCTCCTTCCACCTCTTCAACCAATCCATCCTCATCTTCATGTCCTGGCCATACTCTCCTCCAGTCTGCTCTACTCCGTGGTCTACGGGTACCGCTTCTGGATCGGAGTCGGGTTGCGCGGCGCGTGCTTCCCACTCGTGGTGAATTGCCAGGTGGCGTTGCTGGTATGCAACTTGGCTTGCCACGTCGGCGTCCTGTTGCTTCAGGTTTTCAAAGGCGGGTGCAACGGAATTGGGGCGTGGGTGTTCAACTCTGTGCTCAATGCCGCCATTCTTTTTCTGTTCATGAAGTTTTATGTGAAAACGCGTTTGAAGAATTCAAAGGTGGATGTTGAGGTTGAAGAAGAGAGTAGTTGCACACATTGGGGATCTGGTTTGGAGTCAAGGAATGAGGTTAAAGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

291

Amino Acids

32.41

Weight (kDa)

10.09

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	32 - 264	5.5e-18	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75000
fragaria_vesca	FvH4_2g40350
prunus_persica	Prupe.1G383900_v2.0.a1
pyrus_communis	pycom15g02860
rosa_chinensis	RchiOBHm_Chr6g0300401
rosa_laevigata	RLG00000011341
rosa_multiflora	Rmu_sc0001670.1_g000009
rosa_roxburghii	Rroxscaffold_7G00167800
rosa_rugosa	Rorug06G0295700
rosa_samantha	Rh6AG408400 Rh6BG415700 Rh6DG408700
rosa_wichuraiana	Rw6G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	558
AccB1I	GGYRCC	3 cut(s)	193, 457, 558
AccBSI	CCGCTC	1 cut(s)	199
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	8 cut(s)	218, 294, 301, 368, 382, 588, 593, 775
AclWI	GGATC	2 cut(s)	578, 844
AcoI	YGGCCR	2 cut(s)	213, 516
AcsI	RAATTY	1 cut(s)	784
AcuI	CTGAAG	1 cut(s)	656
AcvI	CACGTG	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	458, 660
AdeI	CACNNNGTG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	35, 560
AfiI	CCNNNNNNNGG	7 cut(s)	90, 91, 190, 211, 232, 454, 607
AflIII	ACRYGT	1 cut(s)	773
AgsI	TTSAA	6 cut(s)	488, 682, 718, 781, 789, 809
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	513, 618
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw21I	GWGCWC	2 cut(s)	51, 729
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	578, 844
AoxI	GGCC	3 cut(s)	202, 213, 516
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	784
Asp718I	GGTACC	1 cut(s)	558
AspLEI	GCGC	7 cut(s)	220, 318, 370, 382, 460, 588, 593
AspS9I	GGNCC	2 cut(s)	203, 394
AsuC2I	CCSGG	3 cut(s)	212, 377, 416
AsuHPI	GGTGA	4 cut(s)	109, 160, 437, 622
AvaII	GGWCC	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	518
BanI	GGYRCC	3 cut(s)	193, 457, 558
BanII	GRGCYC	1 cut(s)	98
BauI	CACGAG	1 cut(s)	605
BbrPI	CACGTG	1 cut(s)	102
BbsI	GAAGAC	3 cut(s)	20, 377, 395
Bbv12I	GWGCWC	2 cut(s)	51, 729
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	226, 456, 504
BceAI	ACGGC	5 cut(s)	40, 125, 131, 171, 233
BciT130I	CCWGG	2 cut(s)	515, 620
BcnI	CCSGG	3 cut(s)	212, 377, 416
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	1 cut(s)	874
BfoI	RGCGCY	1 cut(s)	461
BglI	GCCNNNNNGGC	1 cut(s)	657
BisI	GCNGC	9 cut(s)	5, 181, 184, 197, 216, 282, 314, 589, 735
BlsI	GCNGC	9 cut(s)	6, 182, 185, 198, 217, 283, 315, 590, 736
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	5 cut(s)	212, 377, 416, 515, 620
Bme18I	GGWCC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	203, 394
BmiI	GGNNCC	6 cut(s)	97, 195, 345, 420, 459, 560
BmrFI	CCNGG	5 cut(s)	212, 377, 416, 515, 620
BmsI	GCATC	2 cut(s)	36, 273
BpiI	GAAGAC	3 cut(s)	20, 377, 395
BpmI	CTGGAG	1 cut(s)	514
BpuMI	CCSGG	3 cut(s)	212, 377, 416
BsaAI	YACGTR	1 cut(s)	102
BsaHI	GRCGYC	2 cut(s)	458, 660
BsaJI	CCNNGG	1 cut(s)	546
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	7 cut(s)	90, 91, 190, 211, 232, 454, 607
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	3 cut(s)	41, 338, 531
BseBI	CCWGG	2 cut(s)	515, 620
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	6 cut(s)	123, 162, 264, 448, 496, 802
BseLI	CCNNNNNNNGG	7 cut(s)	90, 91, 190, 211, 232, 454, 607
BseNI	ACTGG	3 cut(s)	41, 338, 531
BseRI	GAGGAG	5 cut(s)	260, 265, 336, 461, 517
BseX3I	CGGCCG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	8 cut(s)	218, 294, 301, 368, 382, 588, 593, 775
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	204, 215, 518
BshNI	GGYRCC	3 cut(s)	193, 457, 558
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	51, 729
BsiSI	CCGG	6 cut(s)	191, 212, 376, 416, 455, 461
BslI	CCNNNNNNNGG	7 cut(s)	90, 91, 190, 211, 232, 454, 607
BsmAI	GTCTC	1 cut(s)	247
BsnI	GGCC	3 cut(s)	204, 215, 518
Bsp1286I	GDGCHC	3 cut(s)	51, 98, 729
Bsp143I	GATC	3 cut(s)	252, 570, 836
Bsp68I	TCGCGA	1 cut(s)	294
BspANI	GGCC	3 cut(s)	204, 215, 518
BspFNI	CGCG	8 cut(s)	218, 294, 301, 368, 382, 588, 593, 775
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	6 cut(s)	97, 195, 345, 420, 459, 560
BspPI	GGATC	2 cut(s)	578, 844
BspT107I	GGYRCC	3 cut(s)	193, 457, 558
BsrBI	CCGCTC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	41, 338, 531
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	3 cut(s)	252, 570, 836
BssNI	GRCGYC	2 cut(s)	458, 660
BssSI	CACGAG	1 cut(s)	605
Bst2BI	CACGAG	1 cut(s)	605
Bst2UI	CCWGG	2 cut(s)	515, 620
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	4 cut(s)	119, 179, 489, 807
BstACI	GRCGYC	2 cut(s)	458, 660
BstBAI	YACGTR	1 cut(s)	102
BstC8I	GCNNGC	4 cut(s)	366, 462, 595, 649
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	6 cut(s)	123, 162, 264, 448, 496, 802
BstFNI	CGCG	8 cut(s)	218, 294, 301, 368, 382, 588, 593, 775
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	7 cut(s)	220, 318, 370, 382, 460, 588, 593
BstKTI	GATC	3 cut(s)	255, 573, 839
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	3 cut(s)	252, 570, 836
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 137, 313, 594, 657
BstNI	CCWGG	2 cut(s)	515, 620
BstSCI	CCNGG	5 cut(s)	210, 375, 414, 513, 618
BstUI	CGCG	8 cut(s)	218, 294, 301, 368, 382, 588, 593, 775
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	3 cut(s)	20, 377, 395
BstX2I	RGATCY	1 cut(s)	836
BstYI	RGATCY	1 cut(s)	836
BstZI	CGGCCG	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	204, 215, 518
BtgI	CCRYGG	1 cut(s)	546
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	6 cut(s)	123, 162, 264, 448, 496, 802
BtsIMutI	CAGTG	1 cut(s)	345
BtuMI	TCGCGA	1 cut(s)	294
Cac8I	GCNNGC	4 cut(s)	366, 462, 595, 649
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	7 cut(s)	220, 318, 370, 382, 460, 588, 593
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	203, 394
CseI	GACGC	2 cut(s)	371, 649
Csp6I	GTAC	2 cut(s)	34, 559
CviAII	CATG	3 cut(s)	90, 509, 754
CviQI	GTAC	2 cut(s)	34, 559
DinI	GGCGCC	1 cut(s)	459
DpnI	GATC	3 cut(s)	254, 572, 838
DpnII	GATC	3 cut(s)	252, 570, 836
DraIII	CACNNNGTG	1 cut(s)	303
EaeI	YGGCCR	2 cut(s)	213, 516
EagI	CGGCCG	1 cut(s)	213
Eam1104I	CTCTTC	4 cut(s)	119, 179, 489, 807
EarI	CTCTTC	4 cut(s)	119, 179, 489, 807
EciI	GGCGGA	3 cut(s)	167, 235, 268
EclXI	CGGCCG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	394
Eco52I	CGGCCG	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	656
Eco72I	CACGTG	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	784
EcoRII	CCWGG	2 cut(s)	513, 618
EcoT38I	GRGCYC	1 cut(s)	98
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
FaeI	CATG	3 cut(s)	93, 512, 757
FaiI	YATR	7 cut(s)	11, 91, 510, 521, 637, 755, 765
FatI	CATG	3 cut(s)	89, 508, 753
FauI	CCCGC	2 cut(s)	136, 680
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	9 cut(s)	5, 181, 184, 197, 216, 282, 314, 589, 735
FokI	GGATG	6 cut(s)	110, 149, 251, 435, 483, 809
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	9 cut(s)	5, 181, 184, 197, 216, 282, 314, 589, 735
FspBI	CTAG	1 cut(s)	874
GlaI	GCGC	7 cut(s)	219, 317, 369, 381, 459, 587, 592
GluI	GCNGC	9 cut(s)	5, 181, 184, 197, 216, 282, 314, 589, 735
GsuI	CTGGAG	1 cut(s)	514
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	3 cut(s)	204, 215, 518
HapII	CCGG	6 cut(s)	191, 212, 376, 416, 455, 461
HgaI	GACGC	2 cut(s)	371, 649
HhaI	GCGC	7 cut(s)	220, 318, 370, 382, 460, 588, 593
Hin1I	GRCGYC	2 cut(s)	458, 660
Hin1II	CATG	3 cut(s)	93, 512, 757
Hin6I	GCGC	7 cut(s)	218, 316, 368, 380, 458, 586, 591
HinP1I	GCGC	7 cut(s)	218, 316, 368, 380, 458, 586, 591
HinfI	GANTC	4 cut(s)	289, 466, 576, 848
HpaII	CCGG	6 cut(s)	191, 212, 376, 416, 455, 461
HphI	GGTGA	4 cut(s)	109, 160, 437, 622
Hpy166II	GTNNAC	2 cut(s)	64, 553
Hpy188I	TCNGA	1 cut(s)	575
Hpy188III	TCNNGA	4 cut(s)	229, 293, 568, 754
Hpy8I	GTNNAC	2 cut(s)	64, 553
Hpy99I	CGWCG	3 cut(s)	146, 263, 659
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	5 cut(s)	17, 101, 400, 438, 654
HpyCH4V	TGCA	5 cut(s)	4, 22, 639, 693, 825
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 137, 313, 594, 657
HpySE526I	ACGT	5 cut(s)	17, 101, 400, 438, 654
Hsp92I	GRCGYC	2 cut(s)	458, 660
Hsp92II	CATG	3 cut(s)	93, 512, 757
HspAI	GCGC	7 cut(s)	218, 316, 368, 380, 458, 586, 591
KasI	GGCGCC	1 cut(s)	457
KpnI	GGTACC	1 cut(s)	562
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	252, 570, 836
LmnI	GCTCC	2 cut(s)	101, 349
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	36, 273
MaeI	CTAG	1 cut(s)	874
MaeII	ACGT	5 cut(s)	17, 101, 400, 438, 654
MalI	GATC	3 cut(s)	254, 572, 838
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	3 cut(s)	252, 570, 836
MflI	RGATCY	1 cut(s)	836
MhlI	GDGCHC	3 cut(s)	51, 98, 729
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	3 cut(s)	613, 699, 784
MluI	ACGCGT	1 cut(s)	773
MluNI	TGGCCA	1 cut(s)	518
Mly113I	GGCGCC	1 cut(s)	458
MlyI	GAGTC	3 cut(s)	460, 585, 857
MmeI	TCCRAC	1 cut(s)	53
Mox20I	TGGCCA	1 cut(s)	518
MreI	CGCCGGCG	1 cut(s)	460
MroNI	GCCGGC	1 cut(s)	460
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	1 cut(s)	864
MslI	CAYNNNNRTG	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	518
MspI	CCGG	6 cut(s)	191, 212, 376, 416, 455, 461
MspR9I	CCNGG	5 cut(s)	212, 377, 416, 515, 620
MteI	GCGCNGCGC	1 cut(s)	589
MvaI	CCWGG	2 cut(s)	515, 620
MvnI	CGCG	8 cut(s)	218, 294, 301, 368, 382, 588, 593, 775
MwoI	GCNNNNNNNGC	5 cut(s)	46, 137, 313, 594, 657
NaeI	GCCGGC	1 cut(s)	462
NarI	GGCGCC	1 cut(s)	458
NciI	CCSGG	3 cut(s)	212, 377, 416
NdeII	GATC	3 cut(s)	252, 570, 836
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	93, 512, 757
NlaIV	GGNNCC	6 cut(s)	97, 195, 345, 420, 459, 560
NmeAIII	GCCGAG	2 cut(s)	180, 340
NruI	TCGCGA	1 cut(s)	294
PagI	TCATGA	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	9 cut(s)	6, 182, 185, 198, 217, 283, 315, 590, 736
PleI	GAGTC	3 cut(s)	460, 584, 856
PluTI	GGCGCC	1 cut(s)	461
PmaCI	CACGTG	1 cut(s)	102
PmlI	CACGTG	1 cut(s)	102
PpsI	GAGTC	3 cut(s)	460, 584, 856
Ppu21I	YACGTR	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	513, 618
PspCI	CACGTG	1 cut(s)	102
PspGI	CCWGG	2 cut(s)	513, 618
PspN4I	GGNNCC	6 cut(s)	97, 195, 345, 420, 459, 560
PspPI	GGNCC	2 cut(s)	203, 394
PsuI	RGATCY	1 cut(s)	836
RruI	TCGCGA	1 cut(s)	294
RsaI	GTAC	2 cut(s)	35, 560
RsaNI	GTAC	2 cut(s)	34, 559
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	9 cut(s)	5, 181, 184, 197, 216, 282, 314, 589, 735
Sau3AI	GATC	3 cut(s)	252, 570, 836
Sau96I	GGNCC	2 cut(s)	203, 394
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	3 cut(s)	460, 585, 857
ScrFI	CCNGG	5 cut(s)	212, 377, 416, 515, 620
SduI	GDGCHC	3 cut(s)	51, 98, 729
SfaNI	GCATC	2 cut(s)	36, 273
SfoI	GGCGCC	1 cut(s)	459
SgrAI	CRCCGGYG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	3 cut(s)	613, 699, 784
SspDI	GGCGCC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	874
StyD4I	CCNGG	5 cut(s)	210, 375, 414, 513, 618
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	5 cut(s)	20, 104, 403, 441, 657
TaqI	TCGA	1 cut(s)	80
TasI	AATT	3 cut(s)	613, 699, 784
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	8 cut(s)	183, 186, 199, 218, 284, 316, 591, 737
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	4 cut(s)	26, 497, 742, 770
TspGWI	ACGGA	3 cut(s)	59, 535, 711
TspRI	CASTG	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	784
XmiI	GTMKAC	1 cut(s)	552
XspI	CTAG	1 cut(s)	874
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.