Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0017092

Physical Location & Seq

Genomic Coordinates Forward (+)

44808240 .. 44813263

Gene Structure 5024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0295700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCCACACCATAGCATGCCCTATCAACCAGGTGAACTTGATTTTCGGTTTCCAATTGGAGCCCCCATACATGGGATTCTTGCGTTTTTATCTACAAATCAGATCAAGACTTATGATAAAGCAAGAAATGCATTGGCTCTTGCATTGAGTCCTGTCGTCAGGGCTCTGGTTGATCCAGATGGAGCATTGAGTGATGTGCGGAATTCGGATAGCATAAGCTTCTCAGATTGGTTCATGTCCAAGGGTGGCACACGCACGAGTATCCAGAGAATGTGGGATCCTGTTGCGTACGCTCTTGGGTTCACTGGTTTGATAATTTCCCAAACCTTATATTTTCCAAACATTGTAAATGTTCATCTCTTCAAGGGATGCTCAACGGAATTCATCAATCAGATTGTATGTCCAAGATTTTTCGTGTACCGCGGTCAAGCATCTGTTTTCCTTACTGAAGTAAGTATTGTTGCCCAAGGCTGGGTGATTGAAGCAGAGGATATATACGGTTCGTATTTGATTGGTTTTATCCAGCCCAGACATCTCAGAATGTATGCAGCAGTTCATAATAGTGGCGAACTGGCTTTGTGTAGACCTAGAGACAAAAGCTGGAGTGTCTACCAAGTATTTGAAGAAAATAAAAATCTTGTCGAGAGAGTCAACAGAATATTGTTTTCCACCACTGGCGTGCTATATGCCTTGGTTACAGGTAACCGCAATGGTCGTGGTGTTGATGCAGACCGCACTTTAAAGTTCGGAGATGAGGCAGTGAAATTGAAGCTGATCTATGACATAGAGGAGTGGTGGATTGATGCAGGGGTTGATCCGCTGCGCTTGGCATCTGCCGAGCCATCTGTCGAGCTATCACACAACAGTTATAACACATACCTGTTGTCTGTGTGTTTATCACACAACTGTGTTCCACCGTTGTCTGATTTTTCATCAGACAACGGCTCACTCTACAACGGTGGGACTCCAAATCCCAGATCGGTTTTCTGCCGTTGTCTGATAAGATTTTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

338

Amino Acids

37.86

Weight (kDa)

6.45

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75000
fragaria_vesca	FvH4_2g40350
prunus_persica	Prupe.1G383900_v2.0.a1
pyrus_communis	pycom15g02860
rosa_chinensis	RchiOBHm_Chr6g0300401
rosa_laevigata	RLG00000011341
rosa_multiflora	Rmu_sc0001670.1_g000009
rosa_roxburghii	Rroxscaffold_7G00167800
rosa_rugosa	Rorug06G0295700
rosa_samantha	Rh6AG408400 Rh6BG415700 Rh6DG408700
rosa_wichuraiana	Rw6G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AccI	GTMKAC	2 cut(s)	583, 609
AccII	CGCG	1 cut(s)	423
AciI	CCGC	6 cut(s)	199, 421, 423, 706, 733, 818
AclWI	GGATC	4 cut(s)	167, 272, 285, 809
AcsI	RAATTY	2 cut(s)	202, 380
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	2 cut(s)	290, 419
AfiI	CCNNNNNNNGG	4 cut(s)	71, 72, 471, 472
AgsI	TTSAA	4 cut(s)	364, 482, 623, 769
AjnI	CCWGG	1 cut(s)	28
AleI	CACNNNNGTG	2 cut(s)	677, 906
AluBI	AGCT	4 cut(s)	219, 600, 772, 853
AluI	AGCT	4 cut(s)	219, 600, 772, 853
Alw26I	GTCTC	1 cut(s)	585
AlwI	GGATC	4 cut(s)	167, 272, 285, 809
ApeKI	GCWGC	2 cut(s)	548, 820
ApoI	RAATTY	2 cut(s)	202, 380
AspLEI	GCGC	1 cut(s)	825
AsuHPI	GGTGA	2 cut(s)	44, 487
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	64, 166
BauI	CACGAG	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	560, 807
BccI	CCATC	2 cut(s)	173, 850
BceAI	ACGGC	2 cut(s)	958, 975
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	588
BfuI	GTATCC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	549, 821
BlsI	GCNGC	2 cut(s)	550, 822
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	61, 279
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	5 cut(s)	359, 440, 715, 793, 839
BpmI	CTGGAG	1 cut(s)	622
BsaJI	CCNNGG	4 cut(s)	240, 421, 466, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 72, 471, 472
Bse1I	ACTGG	3 cut(s)	310, 576, 679
Bse3DI	GCAATG	1 cut(s)	715
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	4 cut(s)	240, 421, 466, 690
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	4 cut(s)	71, 72, 471, 472
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	2 cut(s)	237, 550
BseNI	ACTGG	3 cut(s)	310, 576, 679
BseRI	GAGGAG	1 cut(s)	803
BseXI	GCAGC	2 cut(s)	560, 807
BseYI	CCCAGC	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	423
BsiWI	CGTACG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	976
BslI	CCNNNNNNNGG	4 cut(s)	71, 72, 471, 472
BsmAI	GTCTC	1 cut(s)	585
BsmFI	GGGAC	1 cut(s)	976
Bsp1286I	GDGCHC	2 cut(s)	64, 166
Bsp143I	GATC	6 cut(s)	102, 172, 277, 774, 814, 977
BspACI	CCGC	6 cut(s)	199, 421, 423, 706, 733, 818
BspCNI	CTCAG	2 cut(s)	236, 549
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	61, 279
BspPI	GGATC	4 cut(s)	167, 272, 285, 809
BsrDI	GCAATG	1 cut(s)	715
BsrI	ACTGG	3 cut(s)	310, 576, 679
BssECI	CCNNGG	4 cut(s)	240, 421, 466, 690
BssMI	GATC	6 cut(s)	102, 172, 277, 774, 814, 977
BssSI	CACGAG	1 cut(s)	256
BssT1I	CCWWGG	3 cut(s)	240, 466, 690
Bst2BI	CACGAG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	5 cut(s)	500, 866, 908, 918, 959
Bst6I	CTCTTC	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	17, 680
BstDEI	CTNAG	2 cut(s)	223, 536
BstDSI	CCRYGG	1 cut(s)	421
BstEII	GGTNACC	1 cut(s)	701
BstF5I	GGATG	1 cut(s)	374
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	6 cut(s)	105, 175, 280, 777, 817, 980
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	6 cut(s)	102, 172, 277, 774, 814, 977
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	19
BstPI	GGTNACC	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	560, 807
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	303, 672, 765
Cac8I	GCNNGC	2 cut(s)	17, 680
CfoI	GCGC	1 cut(s)	825
Cfr42I	CCGCGG	1 cut(s)	424
CsiI	ACCWGGT	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	289, 418
CspCI	CAANNNNNGTGG	2 cut(s)	697, 732
CviAII	CATG	3 cut(s)	16, 71, 235
CviQI	GTAC	2 cut(s)	289, 418
DdeI	CTNAG	2 cut(s)	223, 536
DpnI	GATC	6 cut(s)	104, 174, 279, 776, 816, 979
DpnII	GATC	6 cut(s)	102, 172, 277, 774, 814, 977
DraI	TTTAAA	1 cut(s)	741
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco130I	CCWWGG	3 cut(s)	240, 466, 690
Eco24I	GRGCYC	2 cut(s)	64, 166
Eco57I	CTGAAG	1 cut(s)	468
Eco91I	GGTNACC	1 cut(s)	701
EcoO65I	GGTNACC	1 cut(s)	701
EcoRI	GAATTC	2 cut(s)	202, 380
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	3 cut(s)	240, 466, 690
EcoT22I	ATGCAT	1 cut(s)	133
EcoT38I	GRGCYC	2 cut(s)	64, 166
ErhI	CCWWGG	3 cut(s)	240, 466, 690
FaeI	CATG	3 cut(s)	19, 74, 238
FaqI	GGGAC	1 cut(s)	976
FatI	CATG	3 cut(s)	15, 70, 234
FblI	GTMKAC	2 cut(s)	583, 609
Fnu4HI	GCNGC	2 cut(s)	549, 821
FokI	GGATG	1 cut(s)	381
FriOI	GRGCYC	2 cut(s)	64, 166
Fsp4HI	GCNGC	2 cut(s)	549, 821
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	2 cut(s)	549, 821
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	622
HhaI	GCGC	1 cut(s)	825
Hin1II	CATG	3 cut(s)	19, 74, 238
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	4 cut(s)	76, 148, 648, 964
HphI	GGTGA	2 cut(s)	44, 487
Hpy166II	GTNNAC	6 cut(s)	35, 303, 418, 584, 610, 652
Hpy188I	TCNGA	9 cut(s)	102, 208, 226, 393, 539, 749, 925, 937, 999
Hpy188III	TCNNGA	4 cut(s)	106, 176, 265, 643
Hpy8I	GTNNAC	6 cut(s)	35, 303, 418, 584, 610, 652
HpyCH4III	ACNGT	5 cut(s)	500, 866, 908, 918, 959
HpyCH4V	TGCA	5 cut(s)	131, 143, 548, 728, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	223, 536
Hsp92II	CATG	3 cut(s)	19, 74, 238
HspAI	GCGC	1 cut(s)	823
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	6 cut(s)	102, 172, 277, 774, 814, 977
LmnI	GCTCC	2 cut(s)	59, 182
Lsp1109I	GCAGC	2 cut(s)	560, 807
LweI	GCATC	5 cut(s)	359, 440, 715, 793, 839
MabI	ACCWGGT	1 cut(s)	28
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	694, 701
MalI	GATC	6 cut(s)	104, 174, 279, 776, 816, 979
MboI	GATC	6 cut(s)	102, 172, 277, 774, 814, 977
MboII	GAAGA	2 cut(s)	352, 635
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	64, 166
MluCI	AATT	5 cut(s)	54, 202, 315, 380, 764
MlyI	GAGTC	3 cut(s)	157, 657, 958
MnlI	CCTC	3 cut(s)	481, 748, 781
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	1 cut(s)	740
MslI	CAYNNNNRTG	3 cut(s)	561, 677, 906
MspA1I	CMGCKG	2 cut(s)	423, 820
MspR9I	CCNGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	6 cut(s)	102, 172, 277, 774, 814, 977
NlaIII	CATG	3 cut(s)	19, 74, 238
NlaIV	GGNNCC	2 cut(s)	61, 279
NmeAIII	GCCGAG	1 cut(s)	862
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	1 cut(s)	19
OliI	CACNNNNGTG	2 cut(s)	677, 906
PaeI	GCATGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	76
Pfl23II	CGTACG	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	550, 822
PleI	GAGTC	3 cut(s)	156, 656, 958
PpsI	GAGTC	3 cut(s)	156, 656, 958
PsiI	TTATAA	1 cut(s)	870
Psp6I	CCWGG	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	701
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	28
PspLI	CGTACG	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	61, 279
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	2 cut(s)	290, 419
RsaNI	GTAC	2 cut(s)	289, 418
RseI	CAYNNNNRTG	3 cut(s)	561, 677, 906
SacII	CCGCGG	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	2 cut(s)	549, 821
Sau3AI	GATC	6 cut(s)	102, 172, 277, 774, 814, 977
SchI	GAGTC	3 cut(s)	157, 657, 958
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	64, 166
SetI	ASST	9 cut(s)	34, 221, 329, 589, 602, 703, 774, 855, 882
SexAI	ACCWGGT	1 cut(s)	28
SfaNI	GCATC	5 cut(s)	359, 440, 715, 793, 839
Sfr303I	CCGCGG	1 cut(s)	424
SgrBI	CCGCGG	1 cut(s)	424
SmiMI	CAYNNNNRTG	3 cut(s)	561, 677, 906
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	5 cut(s)	54, 202, 315, 380, 764
SsiI	CCGC	6 cut(s)	199, 421, 423, 706, 733, 818
SspI	AATATT	1 cut(s)	660
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	3 cut(s)	240, 466, 690
TaaI	ACNGT	5 cut(s)	500, 866, 908, 918, 959
TaqI	TCGA	2 cut(s)	642, 849
TasI	AATT	5 cut(s)	54, 202, 315, 380, 764
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TscAI	CASTG	3 cut(s)	310, 679, 765
TseI	GCWGC	2 cut(s)	548, 820
TspDTI	ATGAA	5 cut(s)	223, 344, 373, 545, 921
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	3 cut(s)	310, 679, 765
XapI	RAATTY	2 cut(s)	202, 380
XceI	RCATGY	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	583, 609
XspI	CTAG	1 cut(s)	588
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.