Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017092

Physical Location & Seq

Genomic Coordinates Reverse (-)

28754148 .. 28755053

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTTACAAGGCATCAAGTACTGCCTATCGGAGCACCCTAGGATACTAAACTTCCGGTGGAGCACGACCCAATCCTGGGGCTCCACGTGGTCCTTCCTCTTCACCGTCATCCCCGCCTACATCGCCGCTGCCGTCACACTCCACCTCCTCCTCACCCTCTTCCGCCGCCGCCGTCCGGTCCCCCTCGGCCCCATCCCCGCCGCGCACAGCCTCCTGATGGCTCTAATATCCGCCGTGATCTTCGTCGGCATGCTCCTCTCAGCCGCCGCAGAGATTCGAGACACGCGGTGGCTCTGGCGGCGGACCAAGACCACCCCGTTCCAGTGGCTCTTCTGCTTCCCGCTCGGCACGCGCCCCTCCGGGCGCGTCTTCTTCTGGTCCTACGTCTTCTACCTCTCCCGGTTCCTCCACCTCTTCCGCACATTCTTCACCATCCTCCGCCGCCGGCGACTCACCTCCTTCCACCTCCTCAACCAGTCCTTCCTCATCTTCATGTCCTTCCTCTGGCTCGAGTTCTCACAATCGTTTCAGGTCCCGGCGATACTCTCCACCAGTCTGCTCTACTCCGTCGTCTACGGCTACCGGTTCTGGGTCGGGGTCGGGATGCGCGGCGCGTGCTTCCCACTCGTGGCGAACTGCCAGGTGGCTTTACTGGGATGTAACCTGGCATGCCATGTCGGCGTTCTGCTGCTTCAGGTGTTCAAAGGCGGGTGCAACGGGATGGGGGCGTGGCTGTTCAACTCGGTGCTCAACGCCGCCATTCTTTTGCTGTTCATGAGTAACTATGTGGAAACTCATATGAAGAATTCAAACTTGGTTGTTGTTCGGGTTGAAGAAGAAGAGACTACCTCCTCACATGTGAGGAGATCTGGTTTCGAGCCCAAAAATGTGGTTAAACAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

302

Amino Acids

34.59

Weight (kDa)

10.48

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	27 - 270	9.4e-37	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75000
fragaria_vesca	FvH4_2g40350
prunus_persica	Prupe.1G383900_v2.0.a1
pyrus_communis	pycom15g02860
rosa_chinensis	RchiOBHm_Chr6g0300401
rosa_laevigata	RLG00000011341
rosa_multiflora	Rmu_sc0001670.1_g000009
rosa_roxburghii	Rroxscaffold_7G00167800
rosa_rugosa	Rorug06G0295700
rosa_samantha	Rh6AG408400 Rh6BG415700 Rh6DG408700
rosa_wichuraiana	Rw6G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	6 cut(s)	203, 286, 352, 366, 609, 614
AcsI	RAATTY	1 cut(s)	805
AcuI	CTGAAG	1 cut(s)	677
AcvI	CACGTG	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	7 cut(s)	75, 76, 175, 217, 504, 589, 628
AflIII	ACRYGT	1 cut(s)	856
AgeI	ACCGGT	1 cut(s)	582
AgsI	TTSAA	4 cut(s)	703, 739, 810, 833
AjnI	CCWGG	3 cut(s)	74, 639, 663
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
Alw21I	GWGCWC	3 cut(s)	36, 65, 750
Alw26I	GTCTC	2 cut(s)	273, 836
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	128, 688
ApoI	RAATTY	1 cut(s)	805
AsiGI	ACCGGT	1 cut(s)	582
AspA2I	CCTAGG	1 cut(s)	38
AspLEI	GCGC	5 cut(s)	205, 354, 366, 609, 614
AspS9I	GGNCC	6 cut(s)	90, 178, 188, 303, 378, 532
AsuC2I	CCSGG	3 cut(s)	361, 400, 536
AsuHPI	GGTGA	4 cut(s)	94, 145, 421, 445
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	5 cut(s)	90, 178, 303, 378, 532
AvrII	CCTAGG	1 cut(s)	38
BanII	GRGCYC	2 cut(s)	83, 882
BauI	CACGAG	1 cut(s)	626
BbrPI	CACGTG	1 cut(s)	87
BbsI	GAAGAC	2 cut(s)	361, 379
Bbv12I	GWGCWC	3 cut(s)	36, 65, 750
BbvI	GCAGC	2 cut(s)	115, 675
BccI	CCATC	4 cut(s)	200, 211, 440, 715
BceAI	ACGGC	4 cut(s)	116, 156, 218, 592
BciT130I	CCWGG	3 cut(s)	76, 641, 665
BciVI	GTATCC	1 cut(s)	36
BcnI	CCSGG	3 cut(s)	361, 400, 536
BcoDI	GTCTC	2 cut(s)	273, 836
BfaI	CTAG	2 cut(s)	39, 904
BfuI	GTATCC	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	678
BglII	AGATCT	1 cut(s)	866
BlnI	CCTAGG	1 cut(s)	38
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	6 cut(s)	76, 361, 400, 536, 641, 665
Bme18I	GGWCC	5 cut(s)	90, 178, 303, 378, 532
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	6 cut(s)	90, 178, 188, 303, 378, 532
BmiI	GGNNCC	5 cut(s)	82, 180, 190, 404, 534
BmrFI	CCNGG	6 cut(s)	76, 361, 400, 536, 641, 665
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	2 cut(s)	21, 594
BmuI	ACTGGG	1 cut(s)	662
BpiI	GAAGAC	2 cut(s)	361, 379
BplI	GAGNNNNNCTC	2 cut(s)	833, 865
BpuMI	CCSGG	3 cut(s)	361, 400, 536
BsaAI	YACGTR	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	38, 75, 184
BsaWI	WCCGGW	3 cut(s)	54, 175, 582
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 856, 886
Bsc4I	CCNNNNNNNGG	7 cut(s)	75, 76, 175, 217, 504, 589, 628
Bse118I	RCCGGY	2 cut(s)	444, 582
Bse1I	ACTGG	4 cut(s)	322, 475, 552, 657
BseBI	CCWGG	3 cut(s)	76, 641, 665
BseDI	CCNNGG	3 cut(s)	38, 75, 184
BseGI	GGATG	6 cut(s)	108, 192, 432, 609, 662, 726
BseLI	CCNNNNNNNGG	7 cut(s)	75, 76, 175, 217, 504, 589, 628
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	4 cut(s)	322, 475, 552, 657
BseRI	GAGGAG	6 cut(s)	137, 140, 245, 458, 841, 877
BseXI	GCAGC	2 cut(s)	115, 675
Bsh1236I	CGCG	6 cut(s)	203, 286, 352, 366, 609, 614
BshFI	GGCC	1 cut(s)	189
BshTI	ACCGGT	1 cut(s)	582
BsiHKAI	GWGCWC	3 cut(s)	36, 65, 750
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	7 cut(s)	55, 176, 360, 400, 445, 536, 583
BslFI	GGGAC	2 cut(s)	164, 518
BslI	CCNNNNNNNGG	7 cut(s)	75, 76, 175, 217, 504, 589, 628
BsmAI	GTCTC	2 cut(s)	273, 836
BsmFI	GGGAC	2 cut(s)	164, 518
BsnI	GGCC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	5 cut(s)	36, 65, 83, 750, 882
Bsp143I	GATC	2 cut(s)	237, 866
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	272
BspFNI	CGCG	6 cut(s)	203, 286, 352, 366, 609, 614
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	5 cut(s)	82, 180, 190, 404, 534
BspQI	GCTCTTC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	343
BsrFI	RCCGGY	2 cut(s)	444, 582
BsrI	ACTGG	4 cut(s)	322, 475, 552, 657
BssAI	RCCGGY	2 cut(s)	444, 582
BssECI	CCNNGG	3 cut(s)	38, 75, 184
BssMI	GATC	2 cut(s)	237, 866
BssSI	CACGAG	1 cut(s)	626
BssT1I	CCWWGG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	626
Bst2UI	CCWGG	3 cut(s)	76, 641, 665
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	5 cut(s)	104, 164, 335, 419, 834
BstBAI	YACGTR	1 cut(s)	87
BstC8I	GCNNGC	5 cut(s)	251, 350, 446, 616, 670
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	6 cut(s)	108, 192, 432, 609, 662, 726
BstFNI	CGCG	6 cut(s)	203, 286, 352, 366, 609, 614
BstHHI	GCGC	5 cut(s)	205, 354, 366, 609, 614
BstKTI	GATC	2 cut(s)	240, 869
BstMAI	GTCTC	2 cut(s)	273, 836
BstMBI	GATC	2 cut(s)	237, 866
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 298, 349, 615, 678
BstNI	CCWGG	3 cut(s)	76, 641, 665
BstNSI	RCATGY	3 cut(s)	253, 672, 860
BstSCI	CCNGG	6 cut(s)	74, 359, 398, 534, 639, 663
BstUI	CGCG	6 cut(s)	203, 286, 352, 366, 609, 614
BstV1I	GCAGC	2 cut(s)	115, 675
BstV2I	GAAGAC	2 cut(s)	361, 379
BstX2I	RGATCY	1 cut(s)	866
BstXI	CCANNNNNNTGG	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	866
BsuI	GTATCC	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	6 cut(s)	108, 192, 432, 609, 662, 726
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	5 cut(s)	251, 350, 446, 616, 670
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	5 cut(s)	205, 354, 366, 609, 614
Cfr10I	RCCGGY	2 cut(s)	444, 582
Cfr13I	GGNCC	6 cut(s)	90, 178, 188, 303, 378, 532
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	19
CspAI	ACCGGT	1 cut(s)	582
CviAII	CATG	6 cut(s)	250, 493, 669, 674, 775, 857
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	2 cut(s)	239, 868
DpnII	GATC	2 cut(s)	237, 866
DraIII	CACNNNGTG	1 cut(s)	288
Eam1104I	CTCTTC	5 cut(s)	104, 164, 335, 419, 834
EarI	CTCTTC	5 cut(s)	104, 164, 335, 419, 834
EciI	GGCGGA	4 cut(s)	152, 220, 316, 428
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	2 cut(s)	83, 882
Eco47I	GGWCC	5 cut(s)	90, 178, 303, 378, 532
Eco57I	CTGAAG	1 cut(s)	677
Eco72I	CACGTG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	3 cut(s)	74, 639, 663
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	2 cut(s)	83, 882
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	6 cut(s)	253, 496, 672, 677, 778, 860
FaiI	YATR	9 cut(s)	251, 494, 670, 675, 776, 786, 798, 800, 858
FaqI	GGGAC	2 cut(s)	164, 518
FatI	CATG	6 cut(s)	249, 492, 668, 673, 774, 856
FauI	CCCGC	4 cut(s)	121, 205, 348, 701
FauNDI	CATATG	1 cut(s)	798
FblI	GTMKAC	1 cut(s)	573
FokI	GGATG	6 cut(s)	95, 179, 419, 616, 669, 733
FriOI	GRGCYC	2 cut(s)	83, 882
FspBI	CTAG	2 cut(s)	39, 904
GlaI	GCGC	5 cut(s)	204, 353, 365, 608, 613
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	7 cut(s)	55, 176, 360, 400, 445, 536, 583
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	5 cut(s)	205, 354, 366, 609, 614
Hin1II	CATG	6 cut(s)	253, 496, 672, 677, 778, 860
Hin6I	GCGC	5 cut(s)	203, 352, 364, 607, 612
HinP1I	GCGC	5 cut(s)	203, 352, 364, 607, 612
HinfI	GANTC	2 cut(s)	274, 450
HpaII	CCGG	7 cut(s)	55, 176, 360, 400, 445, 536, 583
HphI	GGTGA	4 cut(s)	94, 145, 421, 445
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	4 cut(s)	214, 278, 601, 775
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	2 cut(s)	248, 572
HpyAV	CCTTC	4 cut(s)	103, 469, 490, 508
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	86, 384
HpyCH4V	TGCA	1 cut(s)	714
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 298, 349, 615, 678
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	2 cut(s)	86, 384
Hsp92II	CATG	6 cut(s)	253, 496, 672, 677, 778, 860
HspAI	GCGC	5 cut(s)	203, 352, 364, 607, 612
KroI	GCCGGC	1 cut(s)	444
KroNI	GCCGGC	1 cut(s)	446
Kzo9I	GATC	2 cut(s)	237, 866
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	4 cut(s)	31, 60, 86, 258
Lsp1109I	GCAGC	2 cut(s)	115, 675
LweI	GCATC	2 cut(s)	21, 594
MaeI	CTAG	2 cut(s)	39, 904
MaeII	ACGT	2 cut(s)	86, 384
MaeIII	GTNAC	4 cut(s)	3, 133, 659, 779
MalI	GATC	2 cut(s)	239, 868
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	2 cut(s)	237, 866
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	5 cut(s)	36, 65, 83, 750, 882
MluCI	AATT	1 cut(s)	805
MlyI	GAGTC	1 cut(s)	444
MreI	CGCCGGCG	1 cut(s)	444
MroNI	GCCGGC	1 cut(s)	444
MseI	TTAA	1 cut(s)	894
MslI	CAYNNNNRTG	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	7 cut(s)	55, 176, 360, 400, 445, 536, 583
MspR9I	CCNGG	6 cut(s)	76, 361, 400, 536, 641, 665
MteI	GCGCNGCGC	1 cut(s)	610
MvaI	CCWGG	3 cut(s)	76, 641, 665
MvnI	CGCG	6 cut(s)	203, 286, 352, 366, 609, 614
MwoI	GCNNNNNNNGC	5 cut(s)	122, 298, 349, 615, 678
NaeI	GCCGGC	1 cut(s)	446
NciI	CCSGG	3 cut(s)	361, 400, 536
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	2 cut(s)	237, 866
NgoMIV	GCCGGC	1 cut(s)	444
NlaIII	CATG	6 cut(s)	253, 496, 672, 677, 778, 860
NlaIV	GGNNCC	5 cut(s)	82, 180, 190, 404, 534
NmeAIII	GCCGAG	2 cut(s)	165, 324
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	3 cut(s)	253, 672, 860
PaeI	GCATGC	2 cut(s)	253, 672
PaeR7I	CTCGAG	1 cut(s)	509
PagI	TCATGA	1 cut(s)	774
PciI	ACATGT	1 cut(s)	856
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	274
PinAI	ACCGGT	1 cut(s)	582
PleI	GAGTC	1 cut(s)	444
PmaCI	CACGTG	1 cut(s)	87
PmlI	CACGTG	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	444
Ppu21I	YACGTR	1 cut(s)	87
PpuMI	RGGWCCY	1 cut(s)	532
PscI	ACATGT	1 cut(s)	856
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	3 cut(s)	74, 639, 663
PspCI	CACGTG	1 cut(s)	87
PspGI	CCWGG	3 cut(s)	74, 639, 663
PspN4I	GGNNCC	5 cut(s)	82, 180, 190, 404, 534
PspPI	GGNCC	6 cut(s)	90, 178, 188, 303, 378, 532
PspPPI	RGGWCCY	1 cut(s)	532
PspXI	VCTCGAGB	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	866
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	894
Sau3AI	GATC	2 cut(s)	237, 866
Sau96I	GGNCC	6 cut(s)	90, 178, 188, 303, 378, 532
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	6 cut(s)	76, 361, 400, 536, 641, 665
SduI	GDGCHC	5 cut(s)	36, 65, 83, 750, 882
SfaNI	GCATC	2 cut(s)	21, 594
Sfr274I	CTCGAG	1 cut(s)	509
SgrAI	CRCCGGYG	1 cut(s)	444
SinI	GGWCC	5 cut(s)	90, 178, 303, 378, 532
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
SphI	GCATGC	2 cut(s)	253, 672
Sse9I	AATT	1 cut(s)	805
SspMI	CTAG	2 cut(s)	39, 904
StyD4I	CCNGG	6 cut(s)	74, 359, 398, 534, 639, 663
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	2 cut(s)	89, 387
TaqI	TCGA	3 cut(s)	277, 510, 876
TasI	AATT	1 cut(s)	805
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	894
Tru9I	TTAA	1 cut(s)	894
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	128, 688
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	481, 763, 815
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	1 cut(s)	329
VpaK11BI	GGWCC	5 cut(s)	90, 178, 303, 378, 532
XapI	RAATTY	1 cut(s)	805
XceI	RCATGY	3 cut(s)	253, 672, 860
XhoI	CTCGAG	1 cut(s)	509
XmaJI	CCTAGG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	2 cut(s)	39, 904
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.