Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0017092

Physical Location & Seq

Genomic Coordinates Reverse (-)

1766342 .. 1767244

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCGCAGACCATCAAATATTGGCTATCGGAGCACCCAACCATCTTAAACTTCCGCTGGAGCACCACCCACTCATGGGGCTCCACCTGGTCCTTCCTCTTCACCGCCATCCCCGCCTACATCGCCGCCGCCGCCGCCCTCCACCTACTACTCACCCTCTTCCGCCGCCGTGACCGCCCTGTCCCGCTCGGCCCAATCCCTGCCGTCCACAGCCTCTGCATGGCCCTCATATCCGCCGTCATCTTCGCCGGAATCCTCGTCTCCTCCGCCGCAGAGATTCGCGAAACCCGCTGGTTCTGGCGGCGCACCAAGACCACCCCTTTCCAGTGGCTCCTGTGCTTCCCGCTCGGCACCCGCCCTTCCGGCCGCGTCTTCTTCTGGTCTTACGTCTTCTACCTCTCCCGATTCCTCCACCTCCTCCGCACATTCTTCAACATCCTCCGCCGCCGCCGCCTCACCTTCTTCCACCTCTTCAACCAGTCCATCCTCATCTTCATGTCGTTCCTCTGGCTCGAATTCTCCCAATCGTTCCAGGTCCTCGCCATACTCTCCACCACTCTGCTCTACTCCGTCGTCTACGGCTACCGGTTCTGGACCGGAATCGGGCTCCCCGGCGCGTGCTTTCCCTTCGTGGTGAACTGCCAGGTGGTGCTGCTCGGCTGCAACTTGGTCTGCCACGTCGGCGTCCTCTCCCTGCACATTTTGAAAGGCGGCGGGTGCAACGGGATCGGTGCTTGGCTTTGCAACTCCGTCCTCAACGGCGCGATTCTGTTGCTGTTCTTGAAATTCTACGTGAAAATGTATTTGAAGAATTCAGCGGTGGTTGATGAGGTTGTGAGTTCGCCCACGCATTTGGGATCTGAGTCGGAGTCAAAGCCCGTGGTTAAAGAAAAGTATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

301

Amino Acids

34.26

Weight (kDa)

9.86

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	27 - 272	1.2e-39	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75000
fragaria_vesca	FvH4_2g40350
prunus_persica	Prupe.1G383900_v2.0.a1
pyrus_communis	pycom15g02860
rosa_chinensis	RchiOBHm_Chr6g0300401
rosa_laevigata	RLG00000011341
rosa_multiflora	Rmu_sc0001670.1_g000009
rosa_roxburghii	Rroxscaffold_7G00167800
rosa_rugosa	Rorug06G0295700
rosa_samantha	Rh6AG408400 Rh6BG415700 Rh6DG408700
rosa_wichuraiana	Rw6G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	350
AccBSI	CCGCTC	2 cut(s)	187, 346
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	4 cut(s)	282, 369, 617, 764
AclWI	GGATC	2 cut(s)	734, 865
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	3 cut(s)	515, 785, 811
AcyI	GRCGYC	1 cut(s)	684
AfiI	CCNNNNNNNGG	4 cut(s)	75, 76, 220, 603
AgeI	ACCGGT	1 cut(s)	585
AgsI	TTSAA	5 cut(s)	433, 475, 706, 784, 808
AjiI	CACGTC	1 cut(s)	679
AjnI	CCWGG	3 cut(s)	86, 531, 642
Alw21I	GWGCWC	2 cut(s)	36, 65
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	2 cut(s)	734, 865
AlwNI	CAGNNNCTG	1 cut(s)	216
AoxI	GGCC	3 cut(s)	190, 222, 364
ApeKI	GCWGC	2 cut(s)	652, 660
ApoI	RAATTY	3 cut(s)	515, 785, 811
AsiGI	ACCGGT	1 cut(s)	585
AspLEI	GCGC	3 cut(s)	306, 617, 764
AspS9I	GGNCC	5 cut(s)	90, 191, 223, 535, 594
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	4 cut(s)	94, 145, 448, 646
AvaII	GGWCC	3 cut(s)	90, 535, 594
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	2 cut(s)	83, 609
BbsI	GAAGAC	2 cut(s)	364, 382
Bbv12I	GWGCWC	2 cut(s)	36, 65
BbvI	GCAGC	2 cut(s)	639, 647
BccI	CCATC	4 cut(s)	20, 50, 116, 491
BceAI	ACGGC	5 cut(s)	153, 188, 221, 595, 775
BcgI	CGANNNNNNTGC	4 cut(s)	709, 743, 754, 788
BciT130I	CCWGG	3 cut(s)	88, 533, 644
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	265
BglI	GCCNNNNNGGC	2 cut(s)	363, 681
Bme1390I	CCNGG	4 cut(s)	88, 533, 612, 644
Bme18I	GGWCC	3 cut(s)	90, 535, 594
BmgBI	CACGTC	1 cut(s)	679
BmgT120I	GGNCC	5 cut(s)	90, 191, 223, 535, 594
BmiI	GGNNCC	4 cut(s)	82, 332, 352, 608
BmrFI	CCNGG	4 cut(s)	88, 533, 612, 644
BpiI	GAAGAC	2 cut(s)	364, 382
BpmI	CTGGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	793
BsaHI	GRCGYC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	610, 879
BsaWI	WCCGGW	2 cut(s)	585, 596
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 76, 220, 603
Bse118I	RCCGGY	1 cut(s)	585
Bse1I	ACTGG	2 cut(s)	325, 478
BseBI	CCWGG	3 cut(s)	88, 533, 644
BseDI	CCNNGG	2 cut(s)	610, 879
BseGI	GGATG	3 cut(s)	108, 435, 483
BseLI	CCNNNNNNNGG	4 cut(s)	75, 76, 220, 603
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	2 cut(s)	325, 478
BseRI	GAGGAG	2 cut(s)	253, 407
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	639, 647
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	4 cut(s)	282, 369, 617, 764
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	3 cut(s)	192, 224, 366
BshNI	GGYRCC	1 cut(s)	350
BshTI	ACCGGT	1 cut(s)	585
BsiEI	CGRYCG	1 cut(s)	367
BsiHKAI	GWGCWC	2 cut(s)	36, 65
BsiSI	CCGG	5 cut(s)	249, 363, 586, 597, 612
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	4 cut(s)	75, 76, 220, 603
BsmAI	GTCTC	1 cut(s)	265
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	192, 224, 366
Bsp1286I	GDGCHC	4 cut(s)	36, 65, 83, 609
Bsp143I	GATC	2 cut(s)	726, 857
Bsp68I	TCGCGA	1 cut(s)	282
BspANI	GGCC	3 cut(s)	192, 224, 366
BspCNI	CTCAG	1 cut(s)	853
BspFNI	CGCG	4 cut(s)	282, 369, 617, 764
BspLI	GGNNCC	4 cut(s)	82, 332, 352, 608
BspPI	GGATC	2 cut(s)	734, 865
BspT107I	GGYRCC	1 cut(s)	350
BsrBI	CCGCTC	2 cut(s)	187, 346
BsrFI	RCCGGY	1 cut(s)	585
BsrI	ACTGG	2 cut(s)	325, 478
BssAI	RCCGGY	1 cut(s)	585
BssECI	CCNNGG	2 cut(s)	610, 879
BssMI	GATC	2 cut(s)	726, 857
BssNI	GRCGYC	1 cut(s)	684
Bst2UI	CCWGG	3 cut(s)	88, 533, 644
Bst6I	CTCTTC	3 cut(s)	104, 164, 476
BstACI	GRCGYC	1 cut(s)	684
BstBAI	YACGTR	1 cut(s)	793
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	1 cut(s)	861
BstDSI	CCRYGG	1 cut(s)	879
BstF5I	GGATG	3 cut(s)	108, 435, 483
BstFNI	CGCG	4 cut(s)	282, 369, 617, 764
BstHHI	GCGC	3 cut(s)	306, 617, 764
BstKTI	GATC	2 cut(s)	729, 860
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	2 cut(s)	726, 857
BstMCI	CGRYCG	1 cut(s)	367
BstNI	CCWGG	3 cut(s)	88, 533, 644
BstSCI	CCNGG	4 cut(s)	86, 531, 610, 642
BstUI	CGCG	4 cut(s)	282, 369, 617, 764
BstV1I	GCAGC	2 cut(s)	639, 647
BstV2I	GAAGAC	2 cut(s)	364, 382
BstX2I	RGATCY	1 cut(s)	857
BstXI	CCANNNNNNTGG	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	857
BstZI	CGGCCG	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	192, 224, 366
BtgI	CCRYGG	1 cut(s)	879
BtgZI	GCGATG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	679
BtsCI	GGATG	3 cut(s)	108, 435, 483
BtsIMutI	CAGTG	1 cut(s)	332
BtuMI	TCGCGA	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	619
CaiI	CAGNNNCTG	1 cut(s)	216
CfoI	GCGC	3 cut(s)	306, 617, 764
Cfr10I	RCCGGY	1 cut(s)	585
Cfr13I	GGNCC	5 cut(s)	90, 191, 223, 535, 594
CseI	GACGC	2 cut(s)	358, 673
CsiI	ACCWGGT	1 cut(s)	86
CspAI	ACCGGT	1 cut(s)	585
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviAII	CATG	3 cut(s)	75, 220, 496
DdeI	CTNAG	1 cut(s)	861
DpnI	GATC	2 cut(s)	728, 859
DpnII	GATC	2 cut(s)	726, 857
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	364
EagI	CGGCCG	1 cut(s)	364
Eam1104I	CTCTTC	3 cut(s)	104, 164, 476
EarI	CTCTTC	3 cut(s)	104, 164, 476
EciI	GGCGGA	4 cut(s)	152, 223, 256, 431
EclXI	CGGCCG	1 cut(s)	364
Eco24I	GRGCYC	2 cut(s)	83, 609
Eco47I	GGWCC	3 cut(s)	90, 535, 594
Eco52I	CGGCCG	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRI	GAATTC	2 cut(s)	515, 811
EcoRII	CCWGG	3 cut(s)	86, 531, 642
EcoT38I	GRGCYC	2 cut(s)	83, 609
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	3 cut(s)	78, 223, 499
FaiI	YATR	5 cut(s)	76, 221, 230, 497, 545
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	74, 219, 495
FauI	CCCGC	6 cut(s)	121, 192, 296, 351, 362, 707
FblI	GTMKAC	1 cut(s)	576
FokI	GGATG	3 cut(s)	95, 422, 470
FriOI	GRGCYC	2 cut(s)	83, 609
GlaI	GCGC	3 cut(s)	305, 616, 763
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	3 cut(s)	192, 224, 366
HapII	CCGG	5 cut(s)	249, 363, 586, 597, 612
HgaI	GACGC	2 cut(s)	358, 673
HhaI	GCGC	3 cut(s)	306, 617, 764
Hin1I	GRCGYC	1 cut(s)	684
Hin1II	CATG	3 cut(s)	78, 223, 499
Hin6I	GCGC	3 cut(s)	304, 615, 762
HinP1I	GCGC	3 cut(s)	304, 615, 762
HinfI	GANTC	7 cut(s)	252, 277, 405, 600, 766, 863, 869
HpaII	CCGG	5 cut(s)	249, 363, 586, 597, 612
HphI	GGTGA	4 cut(s)	94, 145, 448, 646
Hpy166II	GTNNAC	3 cut(s)	208, 577, 637
Hpy188I	TCNGA	3 cut(s)	31, 862, 868
Hpy188III	TCNNGA	4 cut(s)	281, 402, 592, 781
Hpy8I	GTNNAC	3 cut(s)	208, 577, 637
Hpy99I	CGWCG	2 cut(s)	575, 683
HpyAV	CCTTC	4 cut(s)	103, 369, 469, 637
HpyCH4IV	ACGT	3 cut(s)	387, 678, 792
HpyCH4V	TGCA	5 cut(s)	219, 663, 697, 720, 744
HpyF3I	CTNAG	1 cut(s)	861
HpySE526I	ACGT	3 cut(s)	387, 678, 792
Hsp92I	GRCGYC	1 cut(s)	684
Hsp92II	CATG	3 cut(s)	78, 223, 499
HspAI	GCGC	3 cut(s)	304, 615, 762
Kzo9I	GATC	2 cut(s)	726, 857
LmnI	GCTCC	5 cut(s)	31, 60, 86, 336, 612
Lsp1109I	GCAGC	2 cut(s)	639, 647
MabI	ACCWGGT	1 cut(s)	86
MaeII	ACGT	3 cut(s)	387, 678, 792
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	728, 859
MbiI	CCGCTC	2 cut(s)	187, 346
MboI	GATC	2 cut(s)	726, 857
MflI	RGATCY	1 cut(s)	857
MhlI	GDGCHC	4 cut(s)	36, 65, 83, 609
MluCI	AATT	3 cut(s)	515, 785, 811
MlyI	GAGTC	2 cut(s)	872, 878
MmeI	TCCRAC	1 cut(s)	846
MseI	TTAA	3 cut(s)	47, 885, 901
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	3 cut(s)	57, 291, 818
MspI	CCGG	5 cut(s)	249, 363, 586, 597, 612
MspR9I	CCNGG	4 cut(s)	88, 533, 612, 644
MvaI	CCWGG	3 cut(s)	88, 533, 644
MvnI	CGCG	4 cut(s)	282, 369, 617, 764
NciI	CCSGG	1 cut(s)	612
NdeII	GATC	2 cut(s)	726, 857
NlaIII	CATG	3 cut(s)	78, 223, 499
NlaIV	GGNNCC	4 cut(s)	82, 332, 352, 608
NmeAIII	GCCGAG	3 cut(s)	168, 327, 636
NmuCI	GTSAC	1 cut(s)	170
NruI	TCGCGA	1 cut(s)	282
PfeI	GAWTC	5 cut(s)	252, 277, 405, 600, 766
PinAI	ACCGGT	1 cut(s)	585
PleI	GAGTC	2 cut(s)	871, 877
PpsI	GAGTC	2 cut(s)	871, 877
Ppu21I	YACGTR	1 cut(s)	793
PpuMI	RGGWCCY	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	3 cut(s)	86, 531, 642
PspGI	CCWGG	3 cut(s)	86, 531, 642
PspN4I	GGNNCC	4 cut(s)	82, 332, 352, 608
PspPI	GGNCC	5 cut(s)	90, 191, 223, 535, 594
PspPPI	RGGWCCY	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	857
RruI	TCGCGA	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	3 cut(s)	47, 885, 901
Sau3AI	GATC	2 cut(s)	726, 857
Sau96I	GGNCC	5 cut(s)	90, 191, 223, 535, 594
SchI	GAGTC	2 cut(s)	872, 878
ScrFI	CCNGG	4 cut(s)	88, 533, 612, 644
SduI	GDGCHC	4 cut(s)	36, 65, 83, 609
SexAI	ACCWGGT	1 cut(s)	86
SinI	GGWCC	3 cut(s)	90, 535, 594
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	3 cut(s)	515, 785, 811
SspI	AATATT	1 cut(s)	20
StyD4I	CCNGG	4 cut(s)	86, 531, 610, 642
TaiI	ACGT	3 cut(s)	390, 681, 795
TaqI	TCGA	1 cut(s)	513
TasI	AATT	3 cut(s)	515, 785, 811
TfiI	GAWTC	5 cut(s)	252, 277, 405, 600, 766
Tru1I	TTAA	3 cut(s)	47, 885, 901
Tru9I	TTAA	3 cut(s)	47, 885, 901
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	652, 660
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	484
TspGWI	ACGGA	2 cut(s)	559, 739
TspRI	CASTG	1 cut(s)	332
VpaK11BI	GGWCC	3 cut(s)	90, 535, 594
XapI	RAATTY	3 cut(s)	515, 785, 811
XmiI	GTMKAC	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.