RLG00000011341

elongation of fatty acids protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
8719587 .. 8720501
915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011341

Sequence Viewer

Length: 915 bp
ATGCAGCTAATGAAGACGTTACACAACATCAAGTACTGGCTAACAGAGCACCCTACCATTGTAAACTTCCGGTGGAGTTCGACCCAATCATGGGGCTCCACGTGGTCTTTCCTCTTCACCGTTATCCCCGCCTACATCGCCGTCGCCGTTACCCTCCACCTCATCCTCACCATCTTCCGCCGCCGCCGCCGTCCGGTGCCGCTCGGCCCAATCCCGGCCGCGCACAGCCTCCTGATGGCTTTAATCTCCGCCGTGATCTTCGTCGGCATCCTCCTCTCCTCCGCCGCAGAGATTCGCGACACGCGGTGGCTCTGGCGGCGCACCAAGACCACCCCGTTCCAGTGGCTCCTCTGCTTCCCTCTCGGCACGCGCCCCTCCGGGCGCGTCTTCTTCTGGTCCTACGTCTTCTACCTATCCCGGTTCCTCCACCTGTTCCGCACATTCTTCACCATCCTCCGGCGCCGGCGACTCTCCTCCTTCCACCTCTTCAACCAATCCATCCTCATCTTCATGTCCTTCCTCTGGCTCGAGTTCTCTCAATCGTTTCAGGTCCTGGCCATACTCTCCTCCAGTCTGCTCTACTCCGTGGTATACGGCTACCGGTTCTGGATCGGAGTCGGGTTGCGCGGCGCGTGCTTCCCACTCGTGGTGAATTGCCAGGTGGCGTTGCTGGTATGCAACTTGGCTTGCCACGTCGGCGTTCTGTTGCTTCAGGTTTTCAAAGGCGGGTGCAACGGAATTGGGGCGTGGGTGTTCAACTCTGTGCTCAATGCCGCCATTCTTTTGCTGTTCATGAAGTTTTATGTGAAAACGCATTTGAAGAATTCAAAGGTGGATGTTGAGGTTGAAGAAGAGACTAGTTCCACACATTGGGGATCTGGTTTGGAGTCAAAGAACGAGGTTAAAGAGAAATAG

Protein Analysis

305

Amino Acids

35.09

Weight (kDa)

10.23

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELO PF01151 32 - 277 8.9e-40 GNS1/SUR4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75000
fragaria_vesca FvH4_2g40350
prunus_persica Prupe.1G383900_v2.0.a1
pyrus_communis pycom15g02860
rosa_chinensis RchiOBHm_Chr6g0300401
rosa_laevigata RLG00000011341
rosa_multiflora Rmu_sc0001670.1_g000009
rosa_roxburghii Rroxscaffold_7G00167800
rosa_rugosa Rorug06G0295700
rosa_samantha Rh6AG408400 Rh6BG415700 Rh6DG408700
rosa_wichuraiana Rw6G035720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 196, 459
AccB7I CCANNNNNTGG 1 cut(s) 870
AccBSI CCGCTC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 591
AccII CGCG 7 cut(s) 221, 297, 304, 370, 384, 627, 632
AclWI GGATC 2 cut(s) 617, 883
AcoI YGGCCR 2 cut(s) 216, 555
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 1 cut(s) 695
AcvI CACGTG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 460
AdeI CACNNNGTG 1 cut(s) 306
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 9 cut(s) 90, 91, 193, 214, 235, 456, 522, 646, 870
AgeI ACCGGT 1 cut(s) 600
AgsI TTSAA 6 cut(s) 490, 721, 757, 820, 828, 848
AhlI ACTAGT 1 cut(s) 857
AjiI CACGTC 1 cut(s) 694
AjnI CCWGG 2 cut(s) 552, 657
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 2 cut(s) 51, 768
Alw26I GTCTC 1 cut(s) 848
AlwI GGATC 2 cut(s) 617, 883
AlwNI CAGNNNCTG 1 cut(s) 553
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 3 cut(s) 205, 216, 555
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 823
AsiGI ACCGGT 1 cut(s) 600
AspLEI GCGC 7 cut(s) 223, 321, 372, 384, 462, 627, 632
AspS9I GGNCC 3 cut(s) 206, 396, 550
AsuC2I CCSGG 3 cut(s) 215, 379, 418
AsuHPI GGTGA 4 cut(s) 109, 160, 439, 661
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 2 cut(s) 396, 550
BalI TGGCCA 1 cut(s) 557
BanI GGYRCC 2 cut(s) 196, 459
BanII GRGCYC 1 cut(s) 98
BauI CACGAG 1 cut(s) 644
BbrPI CACGTG 1 cut(s) 102
BbsI GAAGAC 3 cut(s) 20, 379, 397
Bbv12I GWGCWC 2 cut(s) 51, 768
BbvI GCAGC 1 cut(s) 16
BccI CCATC 4 cut(s) 179, 229, 458, 506
BceAI ACGGC 5 cut(s) 125, 131, 174, 236, 610
BciT130I CCWGG 2 cut(s) 554, 659
BcnI CCSGG 3 cut(s) 215, 379, 418
BcoDI GTCTC 1 cut(s) 848
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 1 cut(s) 858
BfoI RGCGCY 1 cut(s) 463
BglI GCCNNNNNGGC 1 cut(s) 696
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 5 cut(s) 215, 379, 418, 554, 659
Bme18I GGWCC 2 cut(s) 396, 550
BmeT110I CYCGRG 1 cut(s) 527
BmgBI CACGTC 1 cut(s) 694
BmgT120I GGNCC 3 cut(s) 206, 396, 550
BmiI GGNNCC 5 cut(s) 97, 198, 347, 422, 461
BmrFI CCNGG 5 cut(s) 215, 379, 418, 554, 659
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 3 cut(s) 20, 379, 397
BpmI CTGGAG 1 cut(s) 553
BpuMI CCSGG 3 cut(s) 215, 379, 418
BsaAI YACGTR 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 460
BsaJI CCNNGG 1 cut(s) 585
BsaWI WCCGGW 3 cut(s) 69, 193, 600
Bsc4I CCNNNNNNNGG 9 cut(s) 90, 91, 193, 214, 235, 456, 522, 646, 870
Bse118I RCCGGY 2 cut(s) 462, 600
Bse1I ACTGG 3 cut(s) 41, 340, 570
BseBI CCWGG 2 cut(s) 554, 659
BseDI CCNNGG 1 cut(s) 585
BseGI GGATG 5 cut(s) 162, 267, 450, 498, 841
BseLI CCNNNNNNNGG 9 cut(s) 90, 91, 193, 214, 235, 456, 522, 646, 870
BseNI ACTGG 3 cut(s) 41, 340, 570
BseRI GAGGAG 5 cut(s) 263, 268, 338, 463, 556
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 7 cut(s) 221, 297, 304, 370, 384, 627, 632
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 207, 218, 557
BshNI GGYRCC 2 cut(s) 196, 459
BshTI ACCGGT 1 cut(s) 600
BsiEI CGRYCG 1 cut(s) 219
BsiHKAI GWGCWC 2 cut(s) 51, 768
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 8 cut(s) 70, 194, 215, 378, 418, 457, 463, 601
BslI CCNNNNNNNGG 9 cut(s) 90, 91, 193, 214, 235, 456, 522, 646, 870
BsmAI GTCTC 1 cut(s) 848
BsnI GGCC 3 cut(s) 207, 218, 557
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 3 cut(s) 51, 98, 768
Bsp143I GATC 3 cut(s) 255, 609, 875
Bsp68I TCGCGA 1 cut(s) 297
BspANI GGCC 3 cut(s) 207, 218, 557
BspFNI CGCG 7 cut(s) 221, 297, 304, 370, 384, 627, 632
BspHI TCATGA 1 cut(s) 792
BspLI GGNNCC 5 cut(s) 97, 198, 347, 422, 461
BspPI GGATC 2 cut(s) 617, 883
BspT107I GGYRCC 2 cut(s) 196, 459
BsrBI CCGCTC 1 cut(s) 202
BsrFI RCCGGY 2 cut(s) 462, 600
BsrI ACTGG 3 cut(s) 41, 340, 570
BssAI RCCGGY 2 cut(s) 462, 600
BssECI CCNNGG 1 cut(s) 585
BssMI GATC 3 cut(s) 255, 609, 875
BssNAI GTATAC 1 cut(s) 592
BssNI GRCGYC 1 cut(s) 460
BssSI CACGAG 1 cut(s) 644
Bst1107I GTATAC 1 cut(s) 592
Bst2BI CACGAG 1 cut(s) 644
Bst2UI CCWGG 2 cut(s) 554, 659
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 3 cut(s) 119, 491, 846
BstACI GRCGYC 1 cut(s) 460
BstBAI YACGTR 1 cut(s) 102
BstC8I GCNNGC 4 cut(s) 368, 464, 634, 688
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 5 cut(s) 162, 267, 450, 498, 841
BstFNI CGCG 7 cut(s) 221, 297, 304, 370, 384, 627, 632
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 7 cut(s) 223, 321, 372, 384, 462, 627, 632
BstKTI GATC 3 cut(s) 258, 612, 878
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 3 cut(s) 255, 609, 875
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 6 cut(s) 46, 137, 186, 316, 633, 696
BstNI CCWGG 2 cut(s) 554, 659
BstSCI CCNGG 5 cut(s) 213, 377, 416, 552, 657
BstUI CGCG 7 cut(s) 221, 297, 304, 370, 384, 627, 632
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 3 cut(s) 20, 379, 397
BstX2I RGATCY 1 cut(s) 875
BstYI RGATCY 1 cut(s) 875
BstZ17I GTATAC 1 cut(s) 592
BstZI CGGCCG 1 cut(s) 216
BsuRI GGCC 3 cut(s) 207, 218, 557
BtgI CCRYGG 1 cut(s) 585
BtgZI GCGATG 1 cut(s) 121
BtrI CACGTC 1 cut(s) 694
BtsCI GGATG 5 cut(s) 162, 267, 450, 498, 841
BtsIMutI CAGTG 1 cut(s) 347
BtuMI TCGCGA 1 cut(s) 297
Cac8I GCNNGC 4 cut(s) 368, 464, 634, 688
CaiI CAGNNNCTG 1 cut(s) 553
CciI TCATGA 1 cut(s) 792
CfoI GCGC 7 cut(s) 223, 321, 372, 384, 462, 627, 632
Cfr10I RCCGGY 2 cut(s) 462, 600
Cfr13I GGNCC 3 cut(s) 206, 396, 550
CseI GACGC 1 cut(s) 373
Csp6I GTAC 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 600
CviAII CATG 3 cut(s) 90, 511, 793
CviQI GTAC 1 cut(s) 34
DinI GGCGCC 1 cut(s) 461
DpnI GATC 3 cut(s) 257, 611, 877
DpnII GATC 3 cut(s) 255, 609, 875
DraIII CACNNNGTG 1 cut(s) 306
EaeI YGGCCR 2 cut(s) 216, 555
EagI CGGCCG 1 cut(s) 216
Eam1104I CTCTTC 3 cut(s) 119, 491, 846
EarI CTCTTC 3 cut(s) 119, 491, 846
EciI GGCGGA 3 cut(s) 167, 238, 271
EclXI CGGCCG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 396, 550
Eco52I CGGCCG 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 695
Eco72I CACGTG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 550
EcoRI GAATTC 1 cut(s) 823
EcoRII CCWGG 2 cut(s) 552, 657
EcoT38I GRGCYC 1 cut(s) 98
EgeI GGCGCC 1 cut(s) 461
EheI GGCGCC 1 cut(s) 461
FaeI CATG 3 cut(s) 93, 514, 796
FaiI YATR 7 cut(s) 91, 512, 560, 592, 676, 794, 804
FatI CATG 3 cut(s) 89, 510, 792
FauI CCCGC 2 cut(s) 136, 719
FblI GTMKAC 1 cut(s) 591
FokI GGATG 5 cut(s) 149, 254, 437, 485, 848
FriOI GRGCYC 1 cut(s) 98
FspBI CTAG 1 cut(s) 858
GlaI GCGC 7 cut(s) 222, 320, 371, 383, 461, 626, 631
GsuI CTGGAG 1 cut(s) 553
HaeII RGCGCY 1 cut(s) 463
HaeIII GGCC 3 cut(s) 207, 218, 557
HapII CCGG 8 cut(s) 70, 194, 215, 378, 418, 457, 463, 601
HgaI GACGC 1 cut(s) 373
HhaI GCGC 7 cut(s) 223, 321, 372, 384, 462, 627, 632
Hin1I GRCGYC 1 cut(s) 460
Hin1II CATG 3 cut(s) 93, 514, 796
Hin6I GCGC 7 cut(s) 221, 319, 370, 382, 460, 625, 630
HinP1I GCGC 7 cut(s) 221, 319, 370, 382, 460, 625, 630
HinfI GANTC 4 cut(s) 292, 468, 615, 887
HpaII CCGG 8 cut(s) 70, 194, 215, 378, 418, 457, 463, 601
HphI GGTGA 4 cut(s) 109, 160, 439, 661
Hpy166II GTNNAC 2 cut(s) 64, 592
Hpy188I TCNGA 1 cut(s) 614
Hpy188III TCNNGA 4 cut(s) 232, 296, 607, 793
Hpy8I GTNNAC 2 cut(s) 64, 592
Hpy99I CGWCG 3 cut(s) 146, 266, 698
HpyAV CCTTC 2 cut(s) 487, 526
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 4 cut(s) 17, 101, 402, 693
HpyCH4V TGCA 3 cut(s) 4, 678, 732
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 137, 186, 316, 633, 696
HpySE526I ACGT 4 cut(s) 17, 101, 402, 693
Hsp92I GRCGYC 1 cut(s) 460
Hsp92II CATG 3 cut(s) 93, 514, 796
HspAI GCGC 7 cut(s) 221, 319, 370, 382, 460, 625, 630
KasI GGCGCC 1 cut(s) 459
KroI GCCGGC 1 cut(s) 462
KroNI GCCGGC 1 cut(s) 464
Kzo9I GATC 3 cut(s) 255, 609, 875
LmnI GCTCC 2 cut(s) 101, 351
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 858
MaeII ACGT 4 cut(s) 17, 101, 402, 693
MaeIII GTNAC 2 cut(s) 18, 148
MalI GATC 3 cut(s) 257, 611, 877
MbiI CCGCTC 1 cut(s) 202
MboI GATC 3 cut(s) 255, 609, 875
MflI RGATCY 1 cut(s) 875
MhlI GDGCHC 3 cut(s) 51, 98, 768
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 3 cut(s) 652, 738, 823
MluNI TGGCCA 1 cut(s) 557
Mly113I GGCGCC 1 cut(s) 460
MlyI GAGTC 3 cut(s) 462, 624, 896
Mox20I TGGCCA 1 cut(s) 557
MreI CGCCGGCG 1 cut(s) 462
MroNI GCCGGC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 557
MseI TTAA 2 cut(s) 242, 903
MslI CAYNNNNRTG 1 cut(s) 509
Msp20I TGGCCA 1 cut(s) 557
MspI CCGG 8 cut(s) 70, 194, 215, 378, 418, 457, 463, 601
MspR9I CCNGG 5 cut(s) 215, 379, 418, 554, 659
MteI GCGCNGCGC 1 cut(s) 628
MvaI CCWGG 2 cut(s) 554, 659
MvnI CGCG 7 cut(s) 221, 297, 304, 370, 384, 627, 632
MwoI GCNNNNNNNGC 6 cut(s) 46, 137, 186, 316, 633, 696
NaeI GCCGGC 1 cut(s) 464
NarI GGCGCC 1 cut(s) 460
NciI CCSGG 3 cut(s) 215, 379, 418
NdeII GATC 3 cut(s) 255, 609, 875
NgoMIV GCCGGC 1 cut(s) 462
NlaIII CATG 3 cut(s) 93, 514, 796
NlaIV GGNNCC 5 cut(s) 97, 198, 347, 422, 461
NmeAIII GCCGAG 2 cut(s) 183, 342
NruI TCGCGA 1 cut(s) 297
PaeR7I CTCGAG 1 cut(s) 527
PagI TCATGA 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 870
PinAI ACCGGT 1 cut(s) 600
PleI GAGTC 3 cut(s) 462, 623, 895
PluTI GGCGCC 1 cut(s) 463
PmaCI CACGTG 1 cut(s) 102
PmlI CACGTG 1 cut(s) 102
PpsI GAGTC 3 cut(s) 462, 623, 895
Ppu21I YACGTR 1 cut(s) 102
PpuMI RGGWCCY 1 cut(s) 550
Psp5II RGGWCCY 1 cut(s) 550
Psp6I CCWGG 2 cut(s) 552, 657
PspCI CACGTG 1 cut(s) 102
PspGI CCWGG 2 cut(s) 552, 657
PspN4I GGNNCC 5 cut(s) 97, 198, 347, 422, 461
PspPI GGNCC 3 cut(s) 206, 396, 550
PspPPI RGGWCCY 1 cut(s) 550
PspXI VCTCGAGB 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 875
RruI TCGCGA 1 cut(s) 297
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 2 cut(s) 242, 903
Sau3AI GATC 3 cut(s) 255, 609, 875
Sau96I GGNCC 3 cut(s) 206, 396, 550
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 3 cut(s) 462, 624, 896
ScrFI CCNGG 5 cut(s) 215, 379, 418, 554, 659
SduI GDGCHC 3 cut(s) 51, 98, 768
SfaNI GCATC 1 cut(s) 276
SfoI GGCGCC 1 cut(s) 461
Sfr274I CTCGAG 1 cut(s) 527
SgrAI CRCCGGYG 1 cut(s) 462
SinI GGWCC 2 cut(s) 396, 550
SlaI CTCGAG 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 3 cut(s) 652, 738, 823
SspDI GGCGCC 1 cut(s) 459
SspMI CTAG 1 cut(s) 858
StyD4I CCNGG 5 cut(s) 213, 377, 416, 552, 657
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 4 cut(s) 20, 104, 405, 696
TaqI TCGA 2 cut(s) 80, 528
TasI AATT 3 cut(s) 652, 738, 823
TatI WGTACW 1 cut(s) 33
TauI GCSGC 9 cut(s) 183, 186, 189, 202, 221, 287, 319, 630, 776
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 242, 903
Tru9I TTAA 2 cut(s) 242, 903
TscAI CASTG 1 cut(s) 347
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 26, 499, 781, 809
TspGWI ACGGA 2 cut(s) 574, 750
TspRI CASTG 1 cut(s) 347
Van91I CCANNNNNTGG 1 cut(s) 870
VpaK11BI GGWCC 2 cut(s) 396, 550
XapI RAATTY 1 cut(s) 823
XhoI CTCGAG 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 591
XspI CTAG 1 cut(s) 858
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.