Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017092

Physical Location & Seq

Genomic Coordinates Forward (+)

59549125 .. 59549805

Gene Structure 681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG408700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCCTTAATCTCCGCCGTGATCTTCGTCGGCATCCTCCTCTCCTCCGCCGCCGAGATTCGCGACACGCGGTGGCTCTGGCGGCGCACCAAGACCACCCCGTTCCAGTGGCTCCTCTGCTTCCCTCTCGGCACGCGCCCCTCCGGGCGCGTCTTCTTCTGGTCCTACGTCTTCTACCTATCCCGGTTCCTCCACCTGTTCCGCACATTCTTCACCGTCCTCCGGCGCCGGCGACTCTCCTCCTTCCACCTCTTCAACCAATCCATCCTCATCTTCATGTCCTTCCTCTGGCTCGAGTTCTCTCAATCGTTTCAGGTCCTGGCCATACTCTCCTCCAGTCTGCTCTACTCCGTGGTCTACGGGTACCGGTTCTGGATCGGAGTCGGGTTGCGCGGCGCGTGCTTCCCACTCGTGGTGAATTGCCAGGTGGCGTTGCTGGTATGCAACTTGGCCTGCCACGTCGGCGTTCTGTTGCTTCAGGTTTTCAAAGGCGGGTGCAACGGAATTGGGGCGTGGGTGTTCAACTCTGTGCTCAATGCCGCCATTCTTTTGCTGTTCATGAAGTTCTATGTGAAAACGCATTTGAAGAATTCAAAGGTGGATGTTGAGGTTGAAGAAGAGAGTAGTTCCACACATTGGGGATCTGGTTTGGAGTCAAAGAATGAGGTTAAAGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

226

Amino Acids

25.98

Weight (kDa)

9.79

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	2 - 199	1.1e-32	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75000
fragaria_vesca	FvH4_2g40350
prunus_persica	Prupe.1G383900_v2.0.a1
pyrus_communis	pycom15g02860
rosa_chinensis	RchiOBHm_Chr6g0300401
rosa_laevigata	RLG00000011341
rosa_multiflora	Rmu_sc0001670.1_g000009
rosa_roxburghii	Rroxscaffold_7G00167800
rosa_rugosa	Rorug06G0295700
rosa_samantha	Rh6AG408400 Rh6BG415700 Rh6DG408700
rosa_wichuraiana	Rw6G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	363
AccB1I	GGYRCC	2 cut(s)	225, 363
AccB7I	CCANNNNNTGG	1 cut(s)	636
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	6 cut(s)	63, 70, 136, 150, 393, 398
AciI	CCGC	9 cut(s)	15, 48, 51, 70, 82, 202, 393, 492, 540
AclWI	GGATC	2 cut(s)	383, 649
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	226
AdeI	CACNNNGTG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	4 cut(s)	222, 288, 412, 636
AgeI	ACCGGT	1 cut(s)	366
AgsI	TTSAA	6 cut(s)	256, 487, 523, 586, 594, 614
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	318, 423
Alw21I	GWGCWC	1 cut(s)	534
AlwI	GGATC	2 cut(s)	383, 649
AlwNI	CAGNNNCTG	1 cut(s)	319
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	3 cut(s)	3, 321, 450
ApoI	RAATTY	1 cut(s)	589
AsiGI	ACCGGT	1 cut(s)	366
Asp718I	GGTACC	1 cut(s)	363
AspLEI	GCGC	6 cut(s)	87, 138, 150, 228, 393, 398
AspS9I	GGNCC	2 cut(s)	162, 316
AsuC2I	CCSGG	2 cut(s)	145, 184
AsuHPI	GGTGA	2 cut(s)	205, 427
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	162, 316
BalI	TGGCCA	1 cut(s)	323
BanI	GGYRCC	2 cut(s)	225, 363
BauI	CACGAG	1 cut(s)	410
BbsI	GAAGAC	2 cut(s)	145, 163
Bbv12I	GWGCWC	1 cut(s)	534
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	2 cut(s)	320, 425
BcnI	CCSGG	2 cut(s)	145, 184
BfoI	RGCGCY	1 cut(s)	229
BglI	GCCNNNNNGGC	1 cut(s)	462
BisI	GCNGC	4 cut(s)	51, 83, 394, 540
BlsI	GCNGC	4 cut(s)	52, 84, 395, 541
Bme1390I	CCNGG	4 cut(s)	145, 184, 320, 425
Bme18I	GGWCC	2 cut(s)	162, 316
BmeT110I	CYCGRG	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	162, 316
BmiI	GGNNCC	4 cut(s)	113, 188, 227, 365
BmrFI	CCNGG	4 cut(s)	145, 184, 320, 425
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	2 cut(s)	145, 163
BpmI	CTGGAG	1 cut(s)	319
BpuMI	CCSGG	2 cut(s)	145, 184
BsaHI	GRCGYC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 288, 412, 636
Bse118I	RCCGGY	2 cut(s)	228, 366
Bse1I	ACTGG	2 cut(s)	106, 336
BseBI	CCWGG	2 cut(s)	320, 425
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	3 cut(s)	33, 264, 607
BseLI	CCNNNNNNNGG	4 cut(s)	222, 288, 412, 636
BseNI	ACTGG	2 cut(s)	106, 336
BseRI	GAGGAG	5 cut(s)	29, 34, 104, 229, 322
Bsh1236I	CGCG	6 cut(s)	63, 70, 136, 150, 393, 398
BshFI	GGCC	3 cut(s)	5, 323, 452
BshNI	GGYRCC	2 cut(s)	225, 363
BshTI	ACCGGT	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	5 cut(s)	144, 184, 223, 229, 367
BslI	CCNNNNNNNGG	4 cut(s)	222, 288, 412, 636
BsnI	GGCC	3 cut(s)	5, 323, 452
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	3 cut(s)	21, 375, 641
Bsp68I	TCGCGA	1 cut(s)	63
BspACI	CCGC	9 cut(s)	15, 48, 51, 70, 82, 202, 393, 492, 540
BspANI	GGCC	3 cut(s)	5, 323, 452
BspFNI	CGCG	6 cut(s)	63, 70, 136, 150, 393, 398
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	4 cut(s)	113, 188, 227, 365
BspPI	GGATC	2 cut(s)	383, 649
BspT107I	GGYRCC	2 cut(s)	225, 363
BsrFI	RCCGGY	2 cut(s)	228, 366
BsrI	ACTGG	2 cut(s)	106, 336
BssAI	RCCGGY	2 cut(s)	228, 366
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	21, 375, 641
BssNI	GRCGYC	1 cut(s)	226
BssSI	CACGAG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	320, 425
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	257, 612
BstACI	GRCGYC	1 cut(s)	226
BstC8I	GCNNGC	4 cut(s)	134, 230, 400, 454
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	3 cut(s)	33, 264, 607
BstFNI	CGCG	6 cut(s)	63, 70, 136, 150, 393, 398
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	6 cut(s)	87, 138, 150, 228, 393, 398
BstKTI	GATC	3 cut(s)	24, 378, 644
BstMBI	GATC	3 cut(s)	21, 375, 641
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 399, 462
BstNI	CCWGG	2 cut(s)	320, 425
BstSCI	CCNGG	4 cut(s)	143, 182, 318, 423
BstUI	CGCG	6 cut(s)	63, 70, 136, 150, 393, 398
BstV2I	GAAGAC	2 cut(s)	145, 163
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
BsuRI	GGCC	3 cut(s)	5, 323, 452
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	33, 264, 607
BtsIMutI	CAGTG	1 cut(s)	113
BtuMI	TCGCGA	1 cut(s)	63
Cac8I	GCNNGC	4 cut(s)	134, 230, 400, 454
CaiI	CAGNNNCTG	1 cut(s)	319
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	6 cut(s)	87, 138, 150, 228, 393, 398
Cfr10I	RCCGGY	2 cut(s)	228, 366
Cfr13I	GGNCC	2 cut(s)	162, 316
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	364
CspAI	ACCGGT	1 cut(s)	366
CviAII	CATG	2 cut(s)	277, 559
CviJI	RGCY	6 cut(s)	5, 76, 112, 292, 323, 452
CviKI_1	RGCY	6 cut(s)	5, 76, 112, 292, 323, 452
CviQI	GTAC	1 cut(s)	364
DinI	GGCGCC	1 cut(s)	227
DpnI	GATC	3 cut(s)	23, 377, 643
DpnII	GATC	3 cut(s)	21, 375, 641
DraIII	CACNNNGTG	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	257, 612
EarI	CTCTTC	2 cut(s)	257, 612
EciI	GGCGGA	2 cut(s)	4, 37
Eco47I	GGWCC	2 cut(s)	162, 316
Eco57I	CTGAAG	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	318, 423
EgeI	GGCGCC	1 cut(s)	227
EheI	GGCGCC	1 cut(s)	227
FaeI	CATG	2 cut(s)	280, 562
FaiI	YATR	5 cut(s)	278, 326, 442, 560, 570
FatI	CATG	2 cut(s)	276, 558
FauI	CCCGC	1 cut(s)	485
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	51, 83, 394, 540
FokI	GGATG	3 cut(s)	20, 251, 614
Fsp4HI	GCNGC	4 cut(s)	51, 83, 394, 540
GlaI	GCGC	6 cut(s)	86, 137, 149, 227, 392, 397
GluI	GCNGC	4 cut(s)	51, 83, 394, 540
GsuI	CTGGAG	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	5, 323, 452
HapII	CCGG	5 cut(s)	144, 184, 223, 229, 367
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	6 cut(s)	87, 138, 150, 228, 393, 398
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	280, 562
Hin6I	GCGC	6 cut(s)	85, 136, 148, 226, 391, 396
HinP1I	GCGC	6 cut(s)	85, 136, 148, 226, 391, 396
HinfI	GANTC	4 cut(s)	58, 234, 381, 653
HpaII	CCGG	5 cut(s)	144, 184, 223, 229, 367
HphI	GGTGA	2 cut(s)	205, 427
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	3 cut(s)	62, 373, 559
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	2 cut(s)	32, 464
HpyAV	CCTTC	2 cut(s)	253, 292
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	168, 459
HpyCH4V	TGCA	2 cut(s)	444, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 399, 462
HpySE526I	ACGT	2 cut(s)	168, 459
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	280, 562
HspAI	GCGC	6 cut(s)	85, 136, 148, 226, 391, 396
KasI	GGCGCC	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	367
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Kzo9I	GATC	3 cut(s)	21, 375, 641
LmnI	GCTCC	1 cut(s)	117
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	2 cut(s)	168, 459
MalI	GATC	3 cut(s)	23, 377, 643
MboI	GATC	3 cut(s)	21, 375, 641
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	1 cut(s)	534
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	3 cut(s)	418, 504, 589
MluNI	TGGCCA	1 cut(s)	323
Mly113I	GGCGCC	1 cut(s)	226
MlyI	GAGTC	3 cut(s)	228, 390, 662
Mox20I	TGGCCA	1 cut(s)	323
MreI	CGCCGGCG	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	2 cut(s)	8, 669
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	323
MspI	CCGG	5 cut(s)	144, 184, 223, 229, 367
MspR9I	CCNGG	4 cut(s)	145, 184, 320, 425
MteI	GCGCNGCGC	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	320, 425
MvnI	CGCG	6 cut(s)	63, 70, 136, 150, 393, 398
MwoI	GCNNNNNNNGC	3 cut(s)	82, 399, 462
NaeI	GCCGGC	1 cut(s)	230
NarI	GGCGCC	1 cut(s)	226
NciI	CCSGG	2 cut(s)	145, 184
NdeII	GATC	3 cut(s)	21, 375, 641
NgoMIV	GCCGGC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	280, 562
NlaIV	GGNNCC	4 cut(s)	113, 188, 227, 365
NmeAIII	GCCGAG	2 cut(s)	79, 108
NruI	TCGCGA	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	293
PagI	TCATGA	1 cut(s)	558
PdiI	GCCGGC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	636
PinAI	ACCGGT	1 cut(s)	366
PkrI	GCNGC	4 cut(s)	52, 84, 395, 541
PleI	GAGTC	3 cut(s)	228, 389, 661
PluTI	GGCGCC	1 cut(s)	229
PpsI	GAGTC	3 cut(s)	228, 389, 661
PpuMI	RGGWCCY	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	318, 423
PspGI	CCWGG	2 cut(s)	318, 423
PspN4I	GGNNCC	4 cut(s)	113, 188, 227, 365
PspPI	GGNCC	2 cut(s)	162, 316
PspPPI	RGGWCCY	1 cut(s)	316
PspXI	VCTCGAGB	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	641
RruI	TCGCGA	1 cut(s)	63
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	8, 669
SatI	GCNGC	4 cut(s)	51, 83, 394, 540
Sau3AI	GATC	3 cut(s)	21, 375, 641
Sau96I	GGNCC	2 cut(s)	162, 316
SchI	GAGTC	3 cut(s)	228, 390, 662
ScrFI	CCNGG	4 cut(s)	145, 184, 320, 425
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	42
SfoI	GGCGCC	1 cut(s)	227
Sfr274I	CTCGAG	1 cut(s)	293
SgrAI	CRCCGGYG	1 cut(s)	228
SinI	GGWCC	2 cut(s)	162, 316
SlaI	CTCGAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	418, 504, 589
SsiI	CCGC	9 cut(s)	15, 48, 51, 70, 82, 202, 393, 492, 540
SspDI	GGCGCC	1 cut(s)	225
StyD4I	CCNGG	4 cut(s)	143, 182, 318, 423
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	171, 462
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	418, 504, 589
TauI	GCSGC	4 cut(s)	53, 85, 396, 542
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	8, 669
Tru9I	TTAA	2 cut(s)	8, 669
TscAI	CASTG	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	265, 547, 575
TspGWI	ACGGA	2 cut(s)	340, 516
TspRI	CASTG	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	636
VpaK11BI	GGWCC	2 cut(s)	162, 316
XapI	RAATTY	1 cut(s)	589
XhoI	CTCGAG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.