Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014133

Physical Location & Seq

Genomic Coordinates Reverse (-)

28250075 .. 28251469

Gene Structure 1395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTCTAGATATCTGCGTGAAGGTTGCCGTCGGTGCTCCTGATGTTCTCGGCGACTGTCCGTTTAGCCAACGTGTTCTTCTGACACTTGAGGAGAAGAAGCTTCCCTACAAGACCCATCTGATTAACGTCTCCGACAAACCCCAATGGTTCTTAGACATTAGTCCAGAGGGGAAAGTTCCGGTGGTGAAGCTTGATGGCAAATGGGTGGCTGATTCTGACGTAATTGTTGGACTTCTTGAAGAGAAATATCCAGAGCCTTCTCTCAAGACTCCTCCTGAATTTGCTTCTGTAGGATCCAAAATCTTTGGTGCTTTTGTGACTTTCTTGAAGAGCAAAGACGCTAATGACGGATCCGAGAAGGCTTTGGTTGATGAGTTAGAAGCGTTGGAGAATCACTTGAAGACACATTCTGGTCCTTTTGTAGCTGGAGAGAAGATTACTGCAGTGGATTTGAGTTTAGCACCAAAGCTTTACCATCTTGAGGTTGCTCTTGGTCATTACAAGAACTGGTCTGTCCCTGAGAGCTTGACCAGTGTTCGTAACTACGCCAAGGCTTTGTTCTCTAGGGAGTCGTTTGAGAACACCAAGGCTAAGAAAGAGATTGTGGTTGCGGGTTGGGAATCGAAGGTGAATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010731 GO:0015036 GO:0015037 GO:0015038 GO:0016020 GO:0016209 GO:0016491 GO:0016667 GO:0016672 GO:0016740 GO:0016765 GO:0019538 GO:0023051 GO:0023056 GO:0031967 GO:0031975 GO:0033218 GO:0034641 GO:0036211 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045174 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0080151 GO:0097237 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1990748 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 ko01100 map00053 map00480 map01100

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

213

Amino Acids

23.41

Weight (kDa)

5.79

Isoelectric Point (pI)

30.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLIC-like_N	PF22441	4 - 84	4.1e-07	CLIC-like N-terminal domain
GST_N_3	PF13417	19 - 87	1.5e-19	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	19 - 77	9e-08	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	20 - 82	1.4e-19	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	115 - 184	5.8e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19550 AT1G19570 AT1G75270
fragaria_vesca	FvH4_7g19940
malus_domestica	MD01G1120300.v1.1 MD07G1189500.v1.1
prunus_persica	Prupe.2G227100_v2.0.a1
pyrus_communis	pycom01g14680
rosa_chinensis	RchiOBHm_Chr1g0365431
rosa_laevigata	RLG00000027422
rosa_multiflora	Rmu_sc0002587.1_g000002
rosa_roxburghii	Rroxscaffold_4G00291240
rosa_rugosa	Rorug01G0322100
rosa_samantha	Rh1BG292300 Rh1CG308800 Rh1DG323900
rosa_wichuraiana	Rw1G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	614
AclWI	GGATC	4 cut(s)	291, 304, 348, 361
AcsI	RAATTY	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	484
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	242, 331, 403
AjuI	GAANNNNNNNTTGG	4 cut(s)	63, 95, 545, 577
AluBI	AGCT	5 cut(s)	103, 193, 428, 472, 528
AluI	AGCT	5 cut(s)	103, 193, 428, 472, 528
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	4 cut(s)	291, 304, 348, 361
ApoI	RAATTY	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	416
BamHI	GGATCC	2 cut(s)	296, 353
BarI	GAAGNNNNNNTAC	2 cut(s)	92, 124
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	40
BccI	CCATC	3 cut(s)	126, 191, 486
BceAI	ACGGC	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	8, 567
BfmI	CTRYAG	2 cut(s)	291, 444
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	2 cut(s)	298, 355
BoxI	GACNNNNGTC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	3 cut(s)	110, 251, 503
BsaJI	CCNNGG	2 cut(s)	552, 588
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	515, 534
BseDI	CCNNGG	2 cut(s)	552, 588
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	515, 534
BseRI	GAGGAG	2 cut(s)	107, 264
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	296, 353
BspACI	CCGC	1 cut(s)	614
BspCNI	CTCAG	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	298, 355
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	4 cut(s)	291, 304, 348, 361
BspQI	GCTCTTC	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	515, 534
BssECI	CCNNGG	2 cut(s)	552, 588
BssMI	GATC	2 cut(s)	296, 353
BssT1I	CCWWGG	2 cut(s)	552, 588
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	2 cut(s)	237, 326
BstDEI	CTNAG	3 cut(s)	154, 522, 594
BstKTI	GATC	2 cut(s)	299, 356
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	2 cut(s)	296, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSFI	CTRYAG	2 cut(s)	291, 444
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	2 cut(s)	296, 353
BstYI	RGATCY	2 cut(s)	296, 353
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	453, 541
Cfr13I	GGNCC	1 cut(s)	416
CseI	GACGC	1 cut(s)	350
DdeI	CTNAG	3 cut(s)	154, 522, 594
DpnI	GATC	2 cut(s)	298, 355
DpnII	GATC	2 cut(s)	296, 353
Eam1104I	CTCTTC	2 cut(s)	237, 326
EarI	CTCTTC	2 cut(s)	237, 326
Eco130I	CCWWGG	2 cut(s)	552, 588
Eco32I	GATATC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	416
EcoRV	GATATC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	552, 588
ErhI	CCWWGG	2 cut(s)	552, 588
Esp3I	CGTCTC	1 cut(s)	136
FaqI	GGGAC	1 cut(s)	503
FauI	CCCGC	1 cut(s)	607
FspBI	CTAG	2 cut(s)	8, 567
GsuI	CTGGAG	1 cut(s)	450
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	350
HindIII	AAGCTT	3 cut(s)	101, 191, 470
HinfI	GANTC	5 cut(s)	215, 271, 394, 572, 623
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	5 cut(s)	84, 123, 136, 220, 358
Hpy188III	TCNNGA	9 cut(s)	8, 41, 167, 239, 254, 268, 278, 328, 482
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	16, 270, 355, 622
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	3 cut(s)	73, 129, 222
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	3 cut(s)	154, 522, 594
HpySE526I	ACGT	3 cut(s)	73, 129, 222
Kzo9I	GATC	2 cut(s)	296, 353
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	8, 567
MaeII	ACGT	3 cut(s)	73, 129, 222
MaeIII	GTNAC	2 cut(s)	319, 542
MalI	GATC	2 cut(s)	298, 355
MboI	GATC	2 cut(s)	296, 353
MboII	GAAGA	6 cut(s)	71, 109, 254, 343, 415, 448
MflI	RGATCY	2 cut(s)	296, 353
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	2 cut(s)	225, 281
MlyI	GAGTC	2 cut(s)	265, 581
MmeI	TCCRAC	3 cut(s)	159, 211, 369
MnlI	CCTC	4 cut(s)	85, 163, 285, 478
MseI	TTAA	1 cut(s)	126
MspI	CCGG	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	640
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	296, 353
NlaIV	GGNNCC	2 cut(s)	298, 355
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	326
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	3 cut(s)	215, 394, 623
PleI	GAGTC	2 cut(s)	265, 580
PpsI	GAGTC	2 cut(s)	265, 580
PshAI	GACNNNNGTC	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	298, 355
PspPI	GGNCC	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	296, 353
SapI	GCTCTTC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	296, 353
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	2 cut(s)	265, 581
SduI	GDGCHC	1 cut(s)	40
SfcI	CTRYAG	2 cut(s)	291, 444
SinI	GGWCC	1 cut(s)	416
SmlI	CTYRAG	3 cut(s)	89, 266, 482
SmoI	CTYRAG	3 cut(s)	89, 266, 482
Sse9I	AATT	2 cut(s)	225, 281
SsiI	CCGC	1 cut(s)	614
SspMI	CTAG	2 cut(s)	8, 567
StyI	CCWWGG	2 cut(s)	552, 588
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	3 cut(s)	76, 132, 225
TaqI	TCGA	1 cut(s)	626
TasI	AATT	2 cut(s)	225, 281
TfiI	GAWTC	3 cut(s)	215, 394, 623
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	2 cut(s)	453, 541
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspGWI	ACGGA	2 cut(s)	51, 366
TspRI	CASTG	2 cut(s)	453, 541
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	281
XbaI	TCTAGA	1 cut(s)	7
XspI	CTAG	2 cut(s)	8, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.