Rorug01G0322100

Glutathione S-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014133
Physical Location & Seq
Forward (+)
44127679 .. 44129376
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0322100.1

Sequence Viewer

Length: 1272 bp
ATGGCTTCTTCCTTTAGCCGTGGTTGGAAATACGATGTCTTTTTGAGTTTTAGGGGGGAAGATACTCGGAAGATCTTCGTCGGCCATCTTTACAAAGCTTTGACACAGAAAGCAATCAACACCTTCATAGATTCTGAAAAGCTTAGAAAAGGCAACCATCTCTCAGAGCTACTGAAAGCTATCAACGAGTCAAGGTTTTCTATTATAGTTATCTCTCAAAATTATGCTTCTTCCACATGGTGCTTGAAAGAACTTGTCACAATTCTGGAATGCATGAATACCAAGAACCAAATTGTGGTGCCCATTTTCTACCAAGTGGATCCCTCTGATGTTCGTAAACTCGAGAATTGTTTTGCAAAAGCTTTTGCCAAACACAATCGCGATCCTAACATCCACAGTGAAGAGGTACAGAGGTGGAGGTCCGCTCTAGCCGAAGCCACCTATTTGTCTGGTTGGGACTCCCGTCATTACAGGGATGACGCCAAGCTTGTTGACAAAGTTGTGCAAGACATCTTTAACAGATTGTTCAACCTTAACGGATTGTTCAACATCTCATCAAGTAAAGAGAATGGCCTGGTTGGAATTGCTTCCCACATAGAAGAAATGGATTTTCTACTATGTCACGGGGTGGATGATGTTCATATTGTAGGAATATGGGGAATGGGCGGCTTAGGCAAAACAACCATTGCTAGAGCTGTTTATGACAAAATATCTTGTTATTTTGAACACCATTGCTTTCTTCAAAACGTCAGAGAAGGTTTTATGAAGAAAGGTGATGTACTGATGCAAGAAGAACTTCTATCTGGAGTCTTGAACGAAAATGTGCAGAGCTTAGGCATCTTGCGCAGAGGTTACAATATGATAATGGAAAGGCTCAGTCAGAAAAAGGTTCTGCTTGTTCTTGATGATGTGGACAATTTTGCCCAAATAGAAACTTTGCTAGGAAGGATGAAGCCTTCATTTGGTGATGGAAGTAGAATCATTATAACAACTAGAGATGCACAATCTCTAAGTGGAGTTGATGCCACTTATTCTCCCAAGTTATTATCTGATGATAAAGCTCTTCAACTCTTTAGCCAGTATGCCTTCAGAACAAACCAATCCACTAGTGAGTACAATCATCTCTCAAGGAAATTAATTGAATATGCTCAAGGTCTGCCTTTAGCACTTAAAGTCTTGGGATGTTTTCTTGATAAAAAAAGTGCACGCGAGTGGGAGGATGTGTTGGAGAAAATAAAGAGAATCCCACACGGGGATTCAGGATGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006082 GO:0006464 GO:0006518 GO:0006575 GO:0006732 GO:0006749 GO:0006766 GO:0006767 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010193 GO:0010646 GO:0010647 GO:0010731 GO:0015036 GO:0015037 GO:0015038 GO:0016020 GO:0016209 GO:0016491 GO:0016667 GO:0016672 GO:0016740 GO:0016765 GO:0016999 GO:0017001 GO:0017144 GO:0019538 GO:0019752 GO:0019852 GO:0023051 GO:0023056 GO:0033218 GO:0033355 GO:0033554 GO:0034599 GO:0034614 GO:0034641 GO:0035690 GO:0036211 GO:0042221 GO:0042277 GO:0042493 GO:0042542 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043412 GO:0043436 GO:0043603 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045174 GO:0046677 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0071944 GO:0072341 GO:0072593 GO:0080151 GO:0097237 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1901701 GO:1990748 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 ko01100 map00053 map00480 map01100
Pfam Domains
Protein Families
GST_C_2 GST_N_3

Protein Analysis

423

Amino Acids

48.11

Weight (kDa)

8.02

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 10 - 176 6.1e-53 TIR domain
TIR_2 PF13676 13 - 108 7.6e-16 TIR domain
NB-ARC PF00931 210 - 366 7e-20 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19550 AT1G19570 AT1G75270
fragaria_vesca FvH4_7g19940
malus_domestica MD01G1120300.v1.1 MD07G1189500.v1.1
prunus_persica Prupe.2G227100_v2.0.a1
pyrus_communis pycom01g14680
rosa_chinensis RchiOBHm_Chr1g0365431
rosa_laevigata RLG00000027422
rosa_multiflora Rmu_sc0002587.1_g000002
rosa_roxburghii Rroxscaffold_4G00291240
rosa_rugosa Rorug01G0322100
rosa_samantha Rh1BG292300 Rh1CG308800 Rh1DG323900
rosa_wichuraiana Rw1G029330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
Acc16I TGCGCA 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 425
AccII CGCG 2 cut(s) 381, 1209
AciI CCGC 2 cut(s) 423, 666
AclWI GGATC 3 cut(s) 314, 327, 377
AcoI YGGCCR 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 1072
AcyI GRCGYC 1 cut(s) 480
AdeI CACNNNGTG 2 cut(s) 240, 628
AfaI GTAC 3 cut(s) 408, 780, 1115
AfiI CCNNNNNNNGG 3 cut(s) 295, 962, 1252
AgsI TTSAA 8 cut(s) 247, 529, 547, 725, 743, 814, 1067, 1142
AhlI ACTAGT 1 cut(s) 1106
AjnI CCWGG 1 cut(s) 573
AleI CACNNNNGTG 1 cut(s) 1210
AluBI AGCT 9 cut(s) 98, 142, 169, 179, 362, 487, 695, 831, 1061
AluI AGCT 9 cut(s) 98, 142, 169, 179, 362, 487, 695, 831, 1061
Alw21I GWGCWC 1 cut(s) 1207
Alw44I GTGCAC 1 cut(s) 1203
AlwI GGATC 3 cut(s) 314, 327, 377
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 2 cut(s) 82, 571
ApaLI GTGCAC 1 cut(s) 1203
AseI ATTAAT 1 cut(s) 1136
Asp700I GAANNNNTTC 3 cut(s) 74, 586, 795
AspLEI GCGC 1 cut(s) 846
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 785, 977
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 420
BaeGI GKGCMC 2 cut(s) 303, 1207
BaeI ACNNNNGTAYC 2 cut(s) 398, 431
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 1207
BccI CCATC 3 cut(s) 93, 165, 962
BceAI ACGGC 1 cut(s) 3
BciT130I CCWGG 1 cut(s) 575
BcuI ACTAGT 1 cut(s) 1106
BfaI CTAG 5 cut(s) 428, 690, 941, 993, 1107
BglII AGATCT 1 cut(s) 72
BisI GCNGC 1 cut(s) 667
BlsI GCNGC 1 cut(s) 668
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 300, 321
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 4 cut(s) 774, 846, 988, 1012
BoxI GACNNNNGTC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 2 cut(s) 670, 832
BpuEI CTTGAG 2 cut(s) 1111, 1134
BsaHI GRCGYC 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 4 cut(s) 1018, 1048, 1208, 1238
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 962, 1252
Bse1I ACTGG 1 cut(s) 1078
Bse3DI GCAATG 2 cut(s) 684, 730
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 7 cut(s) 390, 481, 637, 954, 1187, 1225, 1268
BseLI CCNNNNNNNGG 3 cut(s) 295, 962, 1252
BseMI GCAATG 2 cut(s) 684, 730
BseMII CTCAG 2 cut(s) 177, 889
BseNI ACTGG 1 cut(s) 1078
BseSI GKGCMC 2 cut(s) 303, 1207
BsgI GTGCAG 1 cut(s) 845
Bsh1236I CGCG 2 cut(s) 381, 1209
BshFI GGCC 2 cut(s) 84, 573
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 1207
BsiHKCI CYCGRG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 3 cut(s) 295, 962, 1252
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 2 cut(s) 84, 573
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 303, 1207
Bsp143I GATC 3 cut(s) 72, 319, 382
Bsp68I TCGCGA 1 cut(s) 381
BspACI CCGC 2 cut(s) 423, 666
BspANI GGCC 2 cut(s) 84, 573
BspCNI CTCAG 2 cut(s) 176, 888
BspFNI CGCG 2 cut(s) 381, 1209
BspLI GGNNCC 2 cut(s) 300, 321
BspPI GGATC 3 cut(s) 314, 327, 377
BspQI GCTCTTC 1 cut(s) 1068
BspT107I GGYRCC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 684, 730
BsrI ACTGG 1 cut(s) 1078
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 3 cut(s) 72, 319, 382
BssNI GRCGYC 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 2 cut(s) 396, 1068
BstACI GRCGYC 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 1207
BstDEI CTNAG 7 cut(s) 143, 163, 670, 832, 875, 1010, 1269
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 7 cut(s) 390, 481, 637, 954, 1187, 1225, 1268
BstFNI CGCG 2 cut(s) 381, 1209
BstHHI GCGC 1 cut(s) 846
BstKTI GATC 3 cut(s) 75, 322, 385
BstMBI GATC 3 cut(s) 72, 319, 382
BstMWI GCNNNNNNNGC 2 cut(s) 672, 843
BstNI CCWGG 1 cut(s) 575
BstPAI GACNNNNGTC 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 573
BstSLI GKGCMC 2 cut(s) 303, 1207
BstUI CGCG 2 cut(s) 381, 1209
BstX2I RGATCY 2 cut(s) 72, 319
BstYI RGATCY 2 cut(s) 72, 319
BsuRI GGCC 2 cut(s) 84, 573
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 7 cut(s) 390, 481, 637, 954, 1187, 1225, 1268
BtsIMutI CAGTG 1 cut(s) 403
BtuMI TCGCGA 1 cut(s) 381
Cac8I GCNNGC 1 cut(s) 1207
CfoI GCGC 1 cut(s) 846
Cfr13I GGNCC 1 cut(s) 420
CseI GACGC 1 cut(s) 488
Csp6I GTAC 3 cut(s) 407, 779, 1114
CviAII CATG 2 cut(s) 237, 274
CviQI GTAC 3 cut(s) 407, 779, 1114
DdeI CTNAG 7 cut(s) 143, 163, 670, 832, 875, 1010, 1269
DpnI GATC 3 cut(s) 74, 321, 384
DpnII GATC 3 cut(s) 72, 319, 382
DraIII CACNNNGTG 2 cut(s) 240, 628
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 396, 1068
EarI CTCTTC 2 cut(s) 396, 1068
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 1072
Eco88I CYCGRG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 275
FaeI CATG 2 cut(s) 240, 277
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FaqI GGGAC 1 cut(s) 470
FatI CATG 2 cut(s) 236, 273
Fnu4HI GCNGC 1 cut(s) 667
FokI GGATG 6 cut(s) 377, 488, 644, 961, 1194, 1232
Fsp4HI GCNGC 1 cut(s) 667
FspBI CTAG 5 cut(s) 428, 690, 941, 993, 1107
FspI TGCGCA 1 cut(s) 845
GlaI GCGC 1 cut(s) 845
GluI GCNGC 1 cut(s) 667
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 2 cut(s) 84, 573
HgaI GACGC 1 cut(s) 488
HhaI GCGC 1 cut(s) 846
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 2 cut(s) 240, 277
Hin6I GCGC 1 cut(s) 844
HinP1I GCGC 1 cut(s) 844
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HindIII AAGCTT 4 cut(s) 96, 140, 360, 485
HinfI GANTC 7 cut(s) 131, 188, 458, 807, 978, 1242, 1256
HphI GGTGA 2 cut(s) 785, 977
Hpy166II GTNNAC 4 cut(s) 338, 493, 913, 1205
Hpy188I TCNGA 8 cut(s) 69, 136, 166, 328, 752, 882, 1051, 1091
Hpy188III TCNNGA 8 cut(s) 266, 343, 380, 804, 811, 902, 1190, 1260
Hpy8I GTNNAC 4 cut(s) 338, 493, 913, 1205
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 5 cut(s) 133, 749, 939, 966, 1096
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 747
HpyCH4V TGCA 7 cut(s) 273, 356, 505, 787, 826, 1001, 1205
HpyF10VI GCNNNNNNNGC 2 cut(s) 672, 843
HpyF3I CTNAG 7 cut(s) 143, 163, 670, 832, 875, 1010, 1269
HpySE526I ACGT 1 cut(s) 747
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 2 cut(s) 240, 277
HspAI GCGC 1 cut(s) 844
Kzo9I GATC 3 cut(s) 72, 319, 382
LguI GCTCTTC 1 cut(s) 1068
LpnPI CCDG 8 cut(s) 251, 435, 457, 560, 587, 789, 1091, 1245
LweI GCATC 4 cut(s) 774, 846, 988, 1012
MaeI CTAG 5 cut(s) 428, 690, 941, 993, 1107
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 3 cut(s) 256, 620, 851
MalI GATC 3 cut(s) 74, 321, 384
MbiI CCGCTC 1 cut(s) 425
MboI GATC 3 cut(s) 72, 319, 382
MflI RGATCY 2 cut(s) 72, 319
MhlI GDGCHC 2 cut(s) 303, 1207
MluCI AATT 8 cut(s) 220, 261, 291, 346, 582, 916, 1133, 1137
MlyI GAGTC 3 cut(s) 197, 452, 816
MmeI TCCRAC 3 cut(s) 5, 559, 1206
MnlI CCTC 6 cut(s) 334, 397, 405, 411, 842, 1210
Mph1103I ATGCAT 1 cut(s) 275
MroXI GAANNNNTTC 3 cut(s) 74, 586, 795
MseI TTAA 4 cut(s) 516, 534, 1136, 1170
MslI CAYNNNNRTG 1 cut(s) 1210
MspR9I CCNGG 1 cut(s) 575
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 575
MvnI CGCG 2 cut(s) 381, 1209
MwoI GCNNNNNNNGC 2 cut(s) 672, 843
NdeII GATC 3 cut(s) 72, 319, 382
NlaIII CATG 2 cut(s) 240, 277
NlaIV GGNNCC 2 cut(s) 300, 321
NmuCI GTSAC 2 cut(s) 256, 620
NruI TCGCGA 1 cut(s) 381
NsbI TGCGCA 1 cut(s) 845
NsiI ATGCAT 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 1210
PaeR7I CTCGAG 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 1068
PctI GAATGC 1 cut(s) 275
PdmI GAANNNNTTC 3 cut(s) 74, 586, 795
PfeI GAWTC 4 cut(s) 131, 978, 1242, 1256
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 1 cut(s) 668
PleI GAGTC 3 cut(s) 196, 452, 815
PpsI GAGTC 3 cut(s) 196, 452, 815
PshAI GACNNNNGTC 1 cut(s) 462
PshBI ATTAAT 1 cut(s) 1136
PsiI TTATAA 1 cut(s) 986
Psp6I CCWGG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 2 cut(s) 300, 321
PspPI GGNCC 1 cut(s) 420
PsuI RGATCY 2 cut(s) 72, 319
RruI TCGCGA 1 cut(s) 381
RsaI GTAC 3 cut(s) 408, 780, 1115
RsaNI GTAC 3 cut(s) 407, 779, 1114
RseI CAYNNNNRTG 1 cut(s) 1210
SapI GCTCTTC 1 cut(s) 1068
SaqAI TTAA 4 cut(s) 516, 534, 1136, 1170
SatI GCNGC 1 cut(s) 667
Sau3AI GATC 3 cut(s) 72, 319, 382
Sau96I GGNCC 1 cut(s) 420
SchI GAGTC 3 cut(s) 197, 452, 816
ScrFI CCNGG 1 cut(s) 575
SduI GDGCHC 2 cut(s) 303, 1207
SfaNI GCATC 4 cut(s) 774, 846, 988, 1012
Sfr274I CTCGAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 420
SlaI CTCGAG 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 1210
SmlI CTYRAG 3 cut(s) 341, 1126, 1149
SmoI CTYRAG 3 cut(s) 341, 1126, 1149
SpeI ACTAGT 1 cut(s) 1106
Sse9I AATT 8 cut(s) 220, 261, 291, 346, 582, 916, 1133, 1137
SsiI CCGC 2 cut(s) 423, 666
SspMI CTAG 5 cut(s) 428, 690, 941, 993, 1107
StyD4I CCNGG 1 cut(s) 573
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 750
TaqI TCGA 1 cut(s) 342
TasI AATT 8 cut(s) 220, 261, 291, 346, 582, 916, 1133, 1137
TatI WGTACW 2 cut(s) 778, 1113
TauI GCSGC 1 cut(s) 669
TfiI GAWTC 4 cut(s) 131, 978, 1242, 1256
Tru1I TTAA 4 cut(s) 516, 534, 1136, 1170
Tru9I TTAA 4 cut(s) 516, 534, 1136, 1170
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 2 cut(s) 256, 620
Tsp45I GTSAC 2 cut(s) 256, 620
TspDTI ATGAA 6 cut(s) 115, 290, 629, 779, 948, 965
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 295
VneI GTGCAC 1 cut(s) 1203
VpaK11BI GGWCC 1 cut(s) 420
VspI ATTAAT 1 cut(s) 1136
XhoI CTCGAG 1 cut(s) 341
XmnI GAANNNNTTC 3 cut(s) 74, 586, 795
XspI CTAG 5 cut(s) 428, 690, 941, 993, 1107
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.