Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014325

Physical Location & Seq

Genomic Coordinates Reverse (-)

28266259 .. 28268416

Gene Structure 2158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCGGCTGCAATGGCTTCTCATGTTTCGACGGCTCGATCACCGGCTCTTTCCTTCTCTTCTTCGTCTTCCTCCTTCTTCCCCGGTACTACTCTTCGGAGATTCTCCGCCGTTTCACTCCCTTCTCCTGCTCTCCCTCGCCTTCGTGTTTCATGTCAAGCCTCCTCCGTCACTTCGCCTTCTTCTCCTTCCGATGTCAAAGGAAAATCTGACCTGAAAGACTTTCTGGCAATAGATGATTTTGACACAGCCACCATTAAAACGATTTTAGACAAGGCTTCAGAGGTTAAGGCCTTGCTGAAATCAGGGGAGAGAAATTATCTACCTTTTAAAGGGAAGTCTATGTCTATGATCTTTGCAAAACCTTCCATGAGGACTCGGGTTTCGTTTGAGACTGGTTTTTTCTTGCTCGGTGGCCATGCGTTATATCTAGGTCCCAATGACATTCAGATGGGTAAGCGGGAGGAAACTCGTGATGTTGCTCGTGTTCTTTCACGCTATAATGACATCATTATGGCTCGTGTATTTGCTCATCAGGACATTCTTGATTTGGCTAACTACTCGAGTGTACCAGTTGTCAATGGTCTGACTGATCATAACCATCCTTGCCAAATCATGGCCGATGCCCTCACAATGATAGAGCACATTGGTCAAGTTGAAGGGACAAAGGTTGTGTATGTTGGAGATGGGAACAACATGGTTCACTCTTGGTTAGAATTGGCATCCGTTATTCCATTCCACTTTGTCTGCGCTTGCCCAAAAGGGTATGAACCAGACAAAGAAAGAGTTTCAAAGGCAAAGCAAGCTGGATTAAGTAAGATAGAGATCACCAATGATCCTAAAGAAGCTGTTATTGGAGCAGATGTTGTGTACTCAGACGTATGGGCCAGTATGGGTCAAAAGGATGAAGCCGAAGCTCGCCGGAAAGCATTCCAAGGATTCCAGGTGGATGAAGCTCTGATGAAGTTGGCGGGTCAAAAAGCCTATTTCATGCATTGTTTGCCTGCAGAGAGAGGAGTTGAGGTGACCAATGGAGTCGTAGAGGCTCCTTATTCCATTGTCTTTCCACAGGCGGAGAATCGCATGCATGCTCAAAATGCTATAATGCTTCACTTGCTCGGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004585 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0016743 GO:0019627 GO:0019752 GO:0034641 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 map00220 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

375

Amino Acids

41.0

Weight (kDa)

7.17

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	73 - 214	4.7e-46	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	220 - 371	4.3e-59	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75330
fragaria_vesca	FvH4_2g39540
malus_domestica	MD08G1028500.v1.1 MD15G1024200.v1.1
prunus_persica	Prupe.1G376500_v2.0.a1
pyrus_communis	pycom08g02260 pycom15g02080
rosa_chinensis	RchiOBHm_Chr6g0301371
rosa_laevigata	RLG00000011256
rosa_multiflora	Rmu_sc0013354.1_g000027
rosa_roxburghii	Rroxscaffold_7G00166870
rosa_rugosa	Rorug06G0304300
rosa_samantha	Rh6AG417700 Rh6BG424400 Rh6CG431500 Rh6DG417400
rosa_wichuraiana	Rw6G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	616
AciI	CCGC	5 cut(s)	5, 108, 460, 971, 1073
AclWI	GGATC	1 cut(s)	830
AcoI	YGGCCR	2 cut(s)	415, 618
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	3 cut(s)	88, 570, 872
AfiI	CCNNNNNNNGG	2 cut(s)	332, 616
AgsI	TTSAA	2 cut(s)	659, 792
AjnI	CCWGG	1 cut(s)	942
AjuI	GAANNNNNNNTTGG	2 cut(s)	837, 869
AluBI	AGCT	4 cut(s)	806, 848, 917, 956
AluI	AGCT	4 cut(s)	806, 848, 917, 956
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	830
Ama87I	CYCGRG	2 cut(s)	378, 562
AoxI	GGCC	4 cut(s)	291, 415, 618, 885
ApeKI	GCWGC	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	367, 399
Asp700I	GAANNNNTTC	1 cut(s)	929
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	2 cut(s)	434, 885
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	33, 820, 1036
AvaI	CYCGRG	2 cut(s)	378, 562
AvaII	GGWCC	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	417
BauI	CACGAG	3 cut(s)	471, 483, 519
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	645
BccI	CCATC	3 cut(s)	445, 609, 680
BceAI	ACGGC	2 cut(s)	48, 95
BciT130I	CCWGG	1 cut(s)	944
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	1005
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	2 cut(s)	84, 944
Bme18I	GGWCC	1 cut(s)	434
BmeT110I	CYCGRG	2 cut(s)	378, 562
BmgT120I	GGNCC	2 cut(s)	434, 885
BmiI	GGNNCC	2 cut(s)	436, 1047
BmrFI	CCNGG	2 cut(s)	84, 944
BmsI	GCATC	2 cut(s)	613, 731
BpiI	GAAGAC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	824
BsaJI	CCNNGG	2 cut(s)	82, 934
BsaXI	ACNNNNNCTCC	4 cut(s)	849, 879, 1008, 1038
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 616
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	3 cut(s)	400, 572, 888
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	824
BseBI	CCWGG	1 cut(s)	944
BseDI	CCNNGG	2 cut(s)	82, 934
BseGI	GGATG	4 cut(s)	601, 722, 910, 955
BseJI	GATNNNNATC	1 cut(s)	824
BseLI	CCNNNNNNNGG	2 cut(s)	332, 616
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	888
BseNI	ACTGG	3 cut(s)	400, 572, 888
BseRI	GAGGAG	2 cut(s)	154, 1029
BshFI	GGCC	4 cut(s)	293, 417, 620, 887
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	2 cut(s)	378, 562
BsiSI	CCGG	3 cut(s)	44, 84, 922
BslFI	GGGAC	2 cut(s)	420, 676
BslI	CCNNNNNNNGG	2 cut(s)	332, 616
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	2 cut(s)	420, 676
BsmI	GAATGC	1 cut(s)	929
BsnI	GGCC	4 cut(s)	293, 417, 620, 887
BsoBI	CYCGRG	2 cut(s)	378, 562
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	5 cut(s)	38, 351, 592, 825, 835
BspACI	CCGC	5 cut(s)	5, 108, 460, 971, 1073
BspANI	GGCC	4 cut(s)	293, 417, 620, 887
BspCNI	CTCAG	1 cut(s)	887
BspLI	GGNNCC	2 cut(s)	436, 1047
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	1 cut(s)	830
BsrDI	GCAATG	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	3 cut(s)	400, 572, 888
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	82, 934
BssMI	GATC	5 cut(s)	38, 351, 592, 825, 835
BssSI	CACGAG	3 cut(s)	471, 483, 519
BssT1I	CCWWGG	1 cut(s)	934
Bst2BI	CACGAG	3 cut(s)	471, 483, 519
Bst2UI	CCWGG	1 cut(s)	944
Bst6I	CTCTTC	2 cut(s)	64, 99
BstAPI	GCANNNNNTGC	1 cut(s)	1000
BstC8I	GCNNGC	6 cut(s)	754, 804, 919, 1005, 1085, 1089
BstDEI	CTNAG	1 cut(s)	874
BstEII	GGTNACC	1 cut(s)	1024
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	4 cut(s)	601, 722, 910, 955
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	5 cut(s)	41, 354, 595, 828, 838
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	5 cut(s)	38, 351, 592, 825, 835
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 803, 1000, 1097, 1114
BstNI	CCWGG	1 cut(s)	944
BstNSI	RCATGY	2 cut(s)	1087, 1091
BstPI	GGTNACC	1 cut(s)	1024
BstSCI	CCNGG	2 cut(s)	82, 942
BstSFI	CTRYAG	1 cut(s)	1005
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	293, 417, 620, 887
BtsCI	GGATG	4 cut(s)	601, 722, 910, 955
Cac8I	GCNNGC	6 cut(s)	754, 804, 919, 1005, 1085, 1089
CfoI	GCGC	1 cut(s)	752
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	434, 885
Csp6I	GTAC	3 cut(s)	87, 569, 871
CviAII	CATG	9 cut(s)	23, 153, 370, 419, 616, 697, 991, 1084, 1088
CviQI	GTAC	3 cut(s)	87, 569, 871
DdeI	CTNAG	1 cut(s)	874
DpnI	GATC	5 cut(s)	40, 353, 594, 827, 837
DpnII	GATC	5 cut(s)	38, 351, 592, 825, 835
DraI	TTTAAA	1 cut(s)	331
EaeI	YGGCCR	2 cut(s)	415, 618
Eam1104I	CTCTTC	2 cut(s)	64, 99
EarI	CTCTTC	2 cut(s)	64, 99
EciI	GGCGGA	2 cut(s)	97, 1088
Eco130I	CCWWGG	1 cut(s)	934
Eco147I	AGGCCT	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	2 cut(s)	378, 562
Eco91I	GGTNACC	1 cut(s)	1024
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	434
EcoO65I	GGTNACC	1 cut(s)	1024
EcoRII	CCWGG	1 cut(s)	942
EcoT14I	CCWWGG	1 cut(s)	934
EcoT22I	ATGCAT	2 cut(s)	996, 1089
ErhI	CCWWGG	1 cut(s)	934
FaeI	CATG	9 cut(s)	26, 156, 373, 422, 619, 700, 994, 1087, 1091
FaqI	GGGAC	2 cut(s)	420, 676
FatI	CATG	9 cut(s)	22, 152, 369, 418, 615, 696, 990, 1083, 1087
FauI	CCCGC	2 cut(s)	453, 964
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	4 cut(s)	588, 709, 917, 962
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	1 cut(s)	751
GluI	GCNGC	2 cut(s)	6, 9
HaeIII	GGCC	4 cut(s)	293, 417, 620, 887
HapII	CCGG	3 cut(s)	44, 84, 922
HhaI	GCGC	1 cut(s)	752
Hin1II	CATG	9 cut(s)	26, 156, 373, 422, 619, 700, 994, 1087, 1091
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HinfI	GANTC	5 cut(s)	102, 376, 939, 1035, 1078
HpaII	CCGG	3 cut(s)	44, 84, 922
HphI	GGTGA	3 cut(s)	33, 820, 1036
Hpy166II	GTNNAC	3 cut(s)	569, 703, 871
Hpy188I	TCNGA	8 cut(s)	99, 193, 211, 283, 450, 588, 877, 960
Hpy188III	TCNNGA	3 cut(s)	473, 536, 545
Hpy8I	GTNNAC	3 cut(s)	569, 703, 871
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	8 cut(s)	64, 85, 132, 152, 189, 198, 375, 653
HpyCH4IV	ACGT	1 cut(s)	879
HpyCH4V	TGCA	5 cut(s)	11, 359, 994, 1007, 1087
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 803, 1000, 1097, 1114
HpyF3I	CTNAG	1 cut(s)	874
HpySE526I	ACGT	1 cut(s)	879
Hsp92II	CATG	9 cut(s)	26, 156, 373, 422, 619, 700, 994, 1087, 1091
HspAI	GCGC	1 cut(s)	750
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	38, 351, 592, 825, 835
LmnI	GCTCC	2 cut(s)	857, 1051
LweI	GCATC	2 cut(s)	613, 731
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	879
MaeIII	GTNAC	2 cut(s)	169, 1024
MalI	GATC	5 cut(s)	40, 353, 594, 827, 837
MboI	GATC	5 cut(s)	38, 351, 592, 825, 835
MboII	GAAGA	6 cut(s)	51, 54, 60, 70, 86, 174
MhlI	GDGCHC	1 cut(s)	645
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	2 cut(s)	316, 716
MluNI	TGGCCA	1 cut(s)	417
MlyI	GAGTC	2 cut(s)	370, 1044
MmeI	TCCRAC	1 cut(s)	661
Mox20I	TGGCCA	1 cut(s)	417
Mph1103I	ATGCAT	2 cut(s)	996, 1089
MroXI	GAANNNNTTC	1 cut(s)	929
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	5 cut(s)	258, 288, 330, 812, 1126
MslI	CAYNNNNRTG	2 cut(s)	449, 512
Msp20I	TGGCCA	1 cut(s)	417
MspI	CCGG	3 cut(s)	44, 84, 922
MspR9I	CCNGG	2 cut(s)	84, 944
Mva1269I	GAATGC	1 cut(s)	929
MvaI	CCWGG	1 cut(s)	944
MwoI	GCNNNNNNNGC	5 cut(s)	14, 803, 1000, 1097, 1114
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	5 cut(s)	38, 351, 592, 825, 835
NlaIII	CATG	9 cut(s)	26, 156, 373, 422, 619, 700, 994, 1087, 1091
NlaIV	GGNNCC	2 cut(s)	436, 1047
NmeAIII	GCCGAG	1 cut(s)	1098
NmuCI	GTSAC	2 cut(s)	169, 1024
NsiI	ATGCAT	2 cut(s)	996, 1089
NspI	RCATGY	2 cut(s)	1087, 1091
PaeI	GCATGC	2 cut(s)	1087, 1091
PaeR7I	CTCGAG	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	929
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	3 cut(s)	102, 939, 1078
PflMI	CCANNNNNTGG	1 cut(s)	616
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	2 cut(s)	370, 1043
PpsI	GAGTC	2 cut(s)	370, 1043
PpuMI	RGGWCCY	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	942
PspEI	GGTNACC	1 cut(s)	1024
PspGI	CCWGG	1 cut(s)	942
PspN4I	GGNNCC	2 cut(s)	436, 1047
PspPI	GGNCC	2 cut(s)	434, 885
PspPPI	RGGWCCY	1 cut(s)	434
PspXI	VCTCGAGB	1 cut(s)	562
PstI	CTGCAG	1 cut(s)	1009
RsaI	GTAC	3 cut(s)	88, 570, 872
RsaNI	GTAC	3 cut(s)	87, 569, 871
RseI	CAYNNNNRTG	2 cut(s)	449, 512
SaqAI	TTAA	5 cut(s)	258, 288, 330, 812, 1126
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	5 cut(s)	38, 351, 592, 825, 835
Sau96I	GGNCC	2 cut(s)	434, 885
SchI	GAGTC	2 cut(s)	370, 1044
ScrFI	CCNGG	2 cut(s)	84, 944
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	2 cut(s)	613, 731
SfcI	CTRYAG	1 cut(s)	1005
Sfr274I	CTCGAG	1 cut(s)	562
SinI	GGWCC	1 cut(s)	434
SlaI	CTCGAG	1 cut(s)	562
SmiMI	CAYNNNNRTG	2 cut(s)	449, 512
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
SphI	GCATGC	2 cut(s)	1087, 1091
Sse9I	AATT	2 cut(s)	316, 716
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	5 cut(s)	5, 108, 460, 971, 1073
SspMI	CTAG	1 cut(s)	431
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	82, 942
StyI	CCWWGG	1 cut(s)	934
TaiI	ACGT	1 cut(s)	882
TaqI	TCGA	3 cut(s)	29, 37, 563
TasI	AATT	2 cut(s)	316, 716
TatI	WGTACW	1 cut(s)	870
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	102, 939, 1078
Tru1I	TTAA	5 cut(s)	258, 288, 330, 812, 1126
Tru9I	TTAA	5 cut(s)	258, 288, 330, 812, 1126
TseFI	GTSAC	2 cut(s)	169, 1024
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	2 cut(s)	169, 1024
TspDTI	ATGAA	6 cut(s)	141, 783, 921, 966, 977, 979
TspGWI	ACGGA	2 cut(s)	157, 715
Van91I	CCANNNNNTGG	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	434
XagI	CCTNNNNNAGG	1 cut(s)	330
XceI	RCATGY	2 cut(s)	1087, 1091
XhoI	CTCGAG	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	1 cut(s)	431
Zsp2I	ATGCAT	2 cut(s)	996, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.