Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014325

Physical Location & Seq

Genomic Coordinates Forward (+)

34117668 .. 34120914

Gene Structure 3247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G376500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCGGCGATTTCTTCTCACCTTTTGGTCCGATCAGACAAACTCTCTCTTTCCTCTCCGTTTTCTTCTTTCTCTGGCCAGAATCTCCGTCGATCGCCTGGATTTTCCGGCAAGTTCACCAGCATTTGCGTATCTTCTCCGGCGACACTCCCAAAAATTTCGTGCCAGACCGCCTCTGCTACTTCTCCACCTTCGTCCCTAGACAATGGAAAAGCAAAAGCAGAACTGAAGGATTTTCTGCACATAAGTGATTTTGACAAATCTACCATTTTAAAGATCTTAGATCGAGCTGTGGAGGTCAAGGCACTTCTAAAATCAGGAGAGAGGACATATCTCCCATTTAAGGGGAAGACTATGGCTATGATCTTTGCAAAGCCATCTATGAGAACACGTGTTTCATTTGAGACTGGGTTTTTCTTGCTAGGAGGTCATGCAATATACTTAGGACCTAATGATATTCAAATGGGTAAGCGGGAGGAAACTCGGGATGTGGCACGTGTTTTGTCTCGCTATAATGACATTATTATGGCACGTGTCTTTGCTCATCAGGATATCCTTGACTTGGCTAAATATGCAACTGTACCTGTTGTCAATGGCTTGACAGACTACAACCATCCCTGCCAAATTATGGCTGATGTCCTCACTATCATCGAACACGTTGGTCAGTTAGAAGGAACTAAGGTTGTCTATGTTGGAGATGGAAACAACGTTGTTCACTCTTGGTTGTTGATGGCTTCGGTTATTCCTTTCCACTTTGTTTGTGCCTGTCCCAAAGGTTTTGAACCAGATAAGAAAACAGTTGAGAAGGCGCAACAGGCAGGCATCAGCAAGATTGAGATCACAAATGATCCAAAGGAAGCAGTCAAAGGAGCTGATGTTGTGTACTCAGATGTGTGGGCCAGCATGGGGCAAAAGGAGGAGGCTGCATATCGCCATCAAGTTTTCCAAGGATTTCAGGTGGATGAAAATCTTATGAAGATAGCAGGGCCAAAAGCCTATTTCATGCATTGTCTACCAGCAGAAAGAGGAGTGGAAGTGACTGACGGAGTGGTTGAGGCTCCAAATTCAATTGTGTTTCCACAAGCTGAGAATCGCATGCATGCACAGAATGCTGTCATGCTTCATCTGCTTGGGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004585 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0016743 GO:0019627 GO:0019752 GO:0034641 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 map00220 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

380

Amino Acids

41.55

Weight (kDa)

8.12

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75330
fragaria_vesca	FvH4_2g39540
malus_domestica	MD08G1028500.v1.1 MD15G1024200.v1.1
prunus_persica	Prupe.1G376500_v2.0.a1
pyrus_communis	pycom08g02260 pycom15g02080
rosa_chinensis	RchiOBHm_Chr6g0301371
rosa_laevigata	RLG00000011256
rosa_multiflora	Rmu_sc0013354.1_g000027
rosa_roxburghii	Rroxscaffold_7G00166870
rosa_rugosa	Rorug06G0304300
rosa_samantha	Rh6AG417700 Rh6BG424400 Rh6CG431500 Rh6DG417400
rosa_wichuraiana	Rw6G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	1012
AciI	CCGC	3 cut(s)	5, 171, 472
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	1 cut(s)	842
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	156, 1063
AcuI	CTGAAG	1 cut(s)	248
AcvI	CACGTG	3 cut(s)	392, 497, 533
AfaI	GTAC	2 cut(s)	582, 884
AfiI	CCNNNNNNNGG	5 cut(s)	343, 344, 562, 628, 906
AflIII	ACRYGT	5 cut(s)	389, 391, 496, 532, 655
AgsI	TTSAA	3 cut(s)	461, 782, 1068
AjnI	CCWGG	1 cut(s)	97
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	290, 872, 1085
AluI	AGCT	3 cut(s)	290, 872, 1085
Alw26I	GTCTC	2 cut(s)	398, 510
AlwI	GGATC	1 cut(s)	842
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	3 cut(s)	76, 897, 986
ApeKI	GCWGC	1 cut(s)	923
ApoI	RAATTY	2 cut(s)	156, 1063
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	4 cut(s)	28, 446, 897, 986
AsuHPI	GGTGA	2 cut(s)	11, 109
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	2 cut(s)	28, 446
BalI	TGGCCA	1 cut(s)	78
BbrPI	CACGTG	3 cut(s)	392, 497, 533
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	910
BccI	CCATC	5 cut(s)	385, 621, 692, 724, 942
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	398, 510
BfaI	CTAG	2 cut(s)	200, 422
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	2 cut(s)	6, 924
BlsI	GCNGC	2 cut(s)	7, 925
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	2 cut(s)	28, 446
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	4 cut(s)	28, 446, 897, 986
BmiI	GGNNCC	1 cut(s)	1059
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	831
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	356
BsaAI	YACGTR	3 cut(s)	392, 497, 533
BsaBI	GATNNNNATC	2 cut(s)	836, 966
BsaJI	CCNNGG	1 cut(s)	946
BsaXI	ACNNNNNCTCC	4 cut(s)	861, 891, 1020, 1050
Bsc4I	CCNNNNNNNGG	5 cut(s)	343, 344, 562, 628, 906
Bse1I	ACTGG	1 cut(s)	412
Bse8I	GATNNNNATC	2 cut(s)	836, 966
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	946
BseGI	GGATG	3 cut(s)	493, 613, 967
BseJI	GATNNNNATC	2 cut(s)	836, 966
BseLI	CCNNNNNNNGG	5 cut(s)	343, 344, 562, 628, 906
BseMII	CTCAG	2 cut(s)	900, 1077
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	2 cut(s)	932, 1041
BseXI	GCAGC	1 cut(s)	910
BsgI	GTGCAG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	78, 899, 988
BsiEI	CGRYCG	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	108, 140
BslFI	GGGAC	2 cut(s)	181, 753
BslI	CCNNNNNNNGG	5 cut(s)	343, 344, 562, 628, 906
BsmAI	GTCTC	2 cut(s)	398, 510
BsmFI	GGGAC	2 cut(s)	181, 753
BsmI	GAATGC	1 cut(s)	1114
BsnI	GGCC	3 cut(s)	78, 899, 988
BsoBI	CYCGRG	1 cut(s)	483
Bsp143I	GATC	7 cut(s)	32, 92, 276, 283, 363, 837, 847
BspACI	CCGC	3 cut(s)	5, 171, 472
BspANI	GGCC	3 cut(s)	78, 899, 988
BspCNI	CTCAG	2 cut(s)	899, 1078
BspLI	GGNNCC	1 cut(s)	1059
BspPI	GGATC	1 cut(s)	842
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	946
BssMI	GATC	7 cut(s)	32, 92, 276, 283, 363, 837, 847
BssT1I	CCWWGG	1 cut(s)	946
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	580, 799
BstAPI	GCANNNNNTGC	1 cut(s)	1109
BstBAI	YACGTR	3 cut(s)	392, 497, 533
BstC8I	GCNNGC	4 cut(s)	820, 901, 1097, 1101
BstDEI	CTNAG	5 cut(s)	280, 442, 678, 886, 1086
BstF5I	GGATG	3 cut(s)	493, 613, 967
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	7 cut(s)	35, 95, 279, 286, 366, 840, 850
BstMAI	GTCTC	2 cut(s)	398, 510
BstMBI	GATC	7 cut(s)	32, 92, 276, 283, 363, 837, 847
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	4 cut(s)	572, 815, 1109, 1126
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	2 cut(s)	1099, 1103
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	910
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	78, 899, 988
BtsCI	GGATG	3 cut(s)	493, 613, 967
Cac8I	GCNNGC	4 cut(s)	820, 901, 1097, 1101
CfoI	GCGC	1 cut(s)	811
Cfr13I	GGNCC	4 cut(s)	28, 446, 897, 986
Csp6I	GTAC	2 cut(s)	581, 883
CspCI	CAANNNNNGTGG	2 cut(s)	740, 775
CviAII	CATG	6 cut(s)	431, 904, 1003, 1096, 1100, 1117
CviQI	GTAC	2 cut(s)	581, 883
DdeI	CTNAG	5 cut(s)	280, 442, 678, 886, 1086
DpnI	GATC	7 cut(s)	34, 94, 278, 285, 365, 839, 849
DpnII	GATC	7 cut(s)	32, 92, 276, 283, 363, 837, 847
DraI	TTTAAA	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	946
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	2 cut(s)	28, 446
Eco57I	CTGAAG	1 cut(s)	248
Eco72I	CACGTG	3 cut(s)	392, 497, 533
Eco88I	CYCGRG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	946
EcoT22I	ATGCAT	2 cut(s)	1008, 1101
ErhI	CCWWGG	1 cut(s)	946
FaeI	CATG	6 cut(s)	434, 907, 1006, 1099, 1103, 1120
FaqI	GGGAC	2 cut(s)	181, 753
FatI	CATG	6 cut(s)	430, 903, 1002, 1095, 1099, 1116
FauI	CCCGC	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	1012
Fnu4HI	GCNGC	2 cut(s)	6, 924
FokI	GGATG	3 cut(s)	500, 600, 974
Fsp4HI	GCNGC	2 cut(s)	6, 924
FspBI	CTAG	2 cut(s)	200, 422
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	2 cut(s)	6, 924
HaeIII	GGCC	3 cut(s)	78, 899, 988
HapII	CCGG	2 cut(s)	108, 140
HhaI	GCGC	1 cut(s)	811
Hin1II	CATG	6 cut(s)	434, 907, 1006, 1099, 1103, 1120
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HinfI	GANTC	2 cut(s)	82, 1090
HpaII	CCGG	2 cut(s)	108, 140
HphI	GGTGA	2 cut(s)	11, 109
Hpy166II	GTNNAC	4 cut(s)	117, 715, 883, 1013
Hpy188I	TCNGA	3 cut(s)	32, 37, 889
Hpy188III	TCNNGA	3 cut(s)	318, 485, 548
Hpy8I	GTNNAC	4 cut(s)	117, 715, 883, 1013
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	4 cut(s)	201, 223, 665, 799
HpyCH4III	ACNGT	2 cut(s)	580, 799
HpyCH4IV	ACGT	5 cut(s)	391, 496, 532, 657, 708
HpyCH4V	TGCA	8 cut(s)	241, 371, 434, 575, 926, 1006, 1099, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	572, 815, 1109, 1126
HpyF3I	CTNAG	5 cut(s)	280, 442, 678, 886, 1086
HpySE526I	ACGT	5 cut(s)	391, 496, 532, 657, 708
Hsp92II	CATG	6 cut(s)	434, 907, 1006, 1099, 1103, 1120
HspAI	GCGC	1 cut(s)	809
Kzo9I	GATC	7 cut(s)	32, 92, 276, 283, 363, 837, 847
LmnI	GCTCC	2 cut(s)	869, 1063
Lsp1109I	GCAGC	1 cut(s)	910
LweI	GCATC	1 cut(s)	831
MaeI	CTAG	2 cut(s)	200, 422
MaeII	ACGT	5 cut(s)	391, 496, 532, 657, 708
MaeIII	GTNAC	1 cut(s)	1036
MalI	GATC	7 cut(s)	34, 94, 278, 285, 365, 839, 849
MboI	GATC	7 cut(s)	32, 92, 276, 283, 363, 837, 847
MboII	GAAGA	5 cut(s)	6, 57, 126, 361, 988
MfeI	CAATTG	1 cut(s)	1068
MflI	RGATCY	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	4 cut(s)	156, 624, 1063, 1068
MluNI	TGGCCA	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	673
Mox20I	TGGCCA	1 cut(s)	78
Mph1103I	ATGCAT	2 cut(s)	1008, 1101
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	2 cut(s)	272, 342
MslI	CAYNNNNRTG	2 cut(s)	246, 524
Msp20I	TGGCCA	1 cut(s)	78
MspI	CCGG	2 cut(s)	108, 140
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	1068
Mva1269I	GAATGC	1 cut(s)	1114
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	572, 815, 1109, 1126
NdeII	GATC	7 cut(s)	32, 92, 276, 283, 363, 837, 847
NlaIII	CATG	6 cut(s)	434, 907, 1006, 1099, 1103, 1120
NlaIV	GGNNCC	1 cut(s)	1059
NmuCI	GTSAC	1 cut(s)	1036
NsiI	ATGCAT	2 cut(s)	1008, 1101
NspI	RCATGY	2 cut(s)	1099, 1103
OliI	CACNNNNGTG	1 cut(s)	246
PaeI	GCATGC	2 cut(s)	1099, 1103
PctI	GAATGC	1 cut(s)	1114
PfeI	GAWTC	2 cut(s)	82, 1090
PflMI	CCANNNNNTGG	1 cut(s)	628
PkrI	GCNGC	2 cut(s)	7, 925
Ple19I	CGATCG	1 cut(s)	95
PmaCI	CACGTG	3 cut(s)	392, 497, 533
PmlI	CACGTG	3 cut(s)	392, 497, 533
Ppu21I	YACGTR	3 cut(s)	392, 497, 533
PpuMI	RGGWCCY	1 cut(s)	446
Psp1406I	AACGTT	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	97
PspCI	CACGTG	3 cut(s)	392, 497, 533
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	1059
PspPI	GGNCC	4 cut(s)	28, 446, 897, 986
PspPPI	RGGWCCY	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	276
PvuI	CGATCG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	582, 884
RsaNI	GTAC	2 cut(s)	581, 883
RseI	CAYNNNNRTG	2 cut(s)	246, 524
SaqAI	TTAA	2 cut(s)	272, 342
SatI	GCNGC	2 cut(s)	6, 924
Sau3AI	GATC	7 cut(s)	32, 92, 276, 283, 363, 837, 847
Sau96I	GGNCC	4 cut(s)	28, 446, 897, 986
ScrFI	CCNGG	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	831
SinI	GGWCC	2 cut(s)	28, 446
SmiMI	CAYNNNNRTG	2 cut(s)	246, 524
SphI	GCATGC	2 cut(s)	1099, 1103
Sse9I	AATT	4 cut(s)	156, 624, 1063, 1068
SsiI	CCGC	3 cut(s)	5, 171, 472
SspMI	CTAG	2 cut(s)	200, 422
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	946
TaaI	ACNGT	2 cut(s)	580, 799
TaiI	ACGT	5 cut(s)	394, 499, 535, 660, 711
TaqI	TCGA	3 cut(s)	91, 286, 651
TasI	AATT	4 cut(s)	156, 624, 1063, 1068
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	82, 1090
Tru1I	TTAA	2 cut(s)	272, 342
Tru9I	TTAA	2 cut(s)	272, 342
TseFI	GTSAC	1 cut(s)	1036
TseI	GCWGC	1 cut(s)	923
Tsp45I	GTSAC	1 cut(s)	1036
TspDTI	ATGAA	5 cut(s)	387, 978, 989, 991, 1112
TspGWI	ACGGA	3 cut(s)	48, 77, 1059
Van91I	CCANNNNNTGG	1 cut(s)	628
VpaK11BI	GGWCC	2 cut(s)	28, 446
XapI	RAATTY	2 cut(s)	156, 1063
XceI	RCATGY	2 cut(s)	1099, 1103
XmiI	GTMKAC	1 cut(s)	1012
XspI	CTAG	2 cut(s)	200, 422
Zsp2I	ATGCAT	2 cut(s)	1008, 1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.