Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014325

Physical Location & Seq

Genomic Coordinates Forward (+)

8029769 .. 8032287

Gene Structure 2519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011256

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGGCGGCGATTTCTCCCTCTCATCTTTTACTCCGATCAGACAGAGCCTCTCCCTCCTCCTTCTCCGGCCAGAGCCTCCGACGATCGATTCCATTTTCCGGCAAGTTCGCCAGCATTTCCGTCTCTTCTCCGGCCTCGTTCCGACGAATCTCGTGCCAGCTGGCCTCCTCTCCTGCCTCTTCGCCTTCAACCTTGGCAACTGGAACAGCAAAAACCGAACAGAAGGATTTTTTGCACATAAATGATTTTGACAAATCTACAATTCTAAAGATCTTAGATAGAGCAGCGGAAGTGAAGGCACTGCTAAAATCAGGAGAGAAGACATATCTCCCGTTTAAGGGGAAGACAATGGCTATGATCTTTGCAAAGCCATCCATGAGAACTCGTGTTTCATTTGAGACTGGGTTTTTCCGGCTAGGAGGTCATGCTATATACCTAGGACCTAATGATATCCAGATGGGAAAGAGGGAGGAAACTCGGGATGTTGCACGAGTTTTATCTCGCTATAATGACATTATTATGGCTCGTGTATTTGCTCATCAGGACATCCTTGATTTGGCCAAATATGCATCTGTGCCTGTTGTCAATGGCCTGACCGACTACAACCATCCATGTCAAATTATGGCTGATGTCCTCACTATTATTGAACACATTGGCCAGTTAGAAGGAACTAAGGTTGTTTATGTTGGAGACGGAAACAACATTGTGCACTCTTGGCTGTTGATGGCTTCTGTTATTCCTTTCCACTTTGTTTGTGCTTGCCCTAAAGGTTTTGAACCAGATAAGGAAACTGTTGAGAAGGCACGACAGGCTGGTATCAGCAAGATTGAGATTACAAATGATCCCAAGGAAGCAGTCAAAGGAGCTGATGTTGTGTACTCAGATGTGTGGGCCAGCATGGGGCAAAAGGAAGAGGCTGCATATCGCCACCAAGTATTTCAAGGATTTCAGATCGATGAGCATCTTATGAAGTTAGCAGGGCCAAATGCTTATTTCATGCATTGCATGCCAGCAGAAAGAGGAGTGGAAGTGACTGATGGAGTGATCGAGGCTTCAAATTCCATCGTCTTTCCACAAGCTGAGAATCGCATGCACGCACAGAATGCCATAATGCTTCATCTGCTTGGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004585 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0016743 GO:0019627 GO:0019752 GO:0034641 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 map00220 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

379

Amino Acids

41.58

Weight (kDa)

8.19

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	76 - 217	2.4e-48	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	223 - 374	7.5e-58	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75330
fragaria_vesca	FvH4_2g39540
malus_domestica	MD08G1028500.v1.1 MD15G1024200.v1.1
prunus_persica	Prupe.1G376500_v2.0.a1
pyrus_communis	pycom08g02260 pycom15g02080
rosa_chinensis	RchiOBHm_Chr6g0301371
rosa_laevigata	RLG00000011256
rosa_multiflora	Rmu_sc0013354.1_g000027
rosa_roxburghii	Rroxscaffold_7G00166870
rosa_rugosa	Rorug06G0304300
rosa_samantha	Rh6AG417700 Rh6BG424400 Rh6CG431500 Rh6DG417400
rosa_wichuraiana	Rw6G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 8, 290
AclWI	GGATC	1 cut(s)	839
AcoI	YGGCCR	3 cut(s)	70, 561, 658
AcsI	RAATTY	1 cut(s)	1060
AfaI	GTAC	1 cut(s)	881
AfiI	CCNNNNNNNGG	5 cut(s)	101, 340, 341, 559, 903
AgsI	TTSAA	5 cut(s)	192, 650, 779, 944, 1059
AluBI	AGCT	3 cut(s)	163, 869, 1082
AluI	AGCT	3 cut(s)	163, 869, 1082
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	3 cut(s)	130, 395, 687
Alw44I	GTGCAC	1 cut(s)	710
AlwI	GGATC	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	480
AoxI	GGCC	8 cut(s)	70, 135, 165, 561, 592, 658, 894, 983
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	287, 920
ApoI	RAATTY	1 cut(s)	1060
AspA2I	CCTAGG	1 cut(s)	439
AspS9I	GGNCC	3 cut(s)	443, 894, 983
AvaI	CYCGRG	1 cut(s)	480
AvaII	GGWCC	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	714
BalI	TGGCCA	2 cut(s)	563, 660
BauI	CACGAG	4 cut(s)	154, 387, 492, 528
BbsI	GAAGAC	2 cut(s)	329, 353
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	299, 907
BccI	CCATC	6 cut(s)	382, 454, 618, 721, 1034, 1073
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BcoDI	GTCTC	3 cut(s)	130, 395, 687
BfaI	CTAG	2 cut(s)	419, 440
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	4 cut(s)	6, 9, 288, 921
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	4 cut(s)	7, 10, 289, 922
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	1 cut(s)	480
BmgT120I	GGNCC	3 cut(s)	443, 894, 983
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	581, 973
BmuI	ACTGGG	1 cut(s)	414
BpiI	GAAGAC	2 cut(s)	329, 353
Bsa29I	ATCGAT	2 cut(s)	89, 957
BsaBI	GATNNNNATC	1 cut(s)	963
BsaJI	CCNNGG	3 cut(s)	195, 439, 849
BsaXI	ACNNNNNCTCC	4 cut(s)	858, 888, 1017, 1047
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 340, 341, 559, 903
Bse1I	ACTGG	3 cut(s)	208, 409, 661
Bse3DI	GCAATG	1 cut(s)	1003
Bse8I	GATNNNNATC	1 cut(s)	963
BseCI	ATCGAT	2 cut(s)	89, 957
BseDI	CCNNGG	3 cut(s)	195, 439, 849
BseGI	GGATG	4 cut(s)	374, 490, 549, 610
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	5 cut(s)	101, 340, 341, 559, 903
BseMI	GCAATG	1 cut(s)	1003
BseMII	CTCAG	2 cut(s)	897, 1074
BseNI	ACTGG	3 cut(s)	208, 409, 661
BseRI	GAGGAG	3 cut(s)	49, 160, 1038
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	2 cut(s)	299, 907
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	8 cut(s)	72, 137, 167, 563, 594, 660, 896, 985
BshVI	ATCGAT	2 cut(s)	89, 957
BsiEI	CGRYCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	4 cut(s)	69, 102, 134, 415
BslI	CCNNNNNNNGG	5 cut(s)	101, 340, 341, 559, 903
BsmAI	GTCTC	3 cut(s)	130, 395, 687
BsmBI	CGTCTC	2 cut(s)	130, 687
BsmI	GAATGC	1 cut(s)	1111
BsnI	GGCC	8 cut(s)	72, 137, 167, 563, 594, 660, 896, 985
BsoBI	CYCGRG	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	7 cut(s)	38, 86, 273, 360, 844, 954, 1047
BspACI	CCGC	3 cut(s)	5, 8, 290
BspANI	GGCC	8 cut(s)	72, 137, 167, 563, 594, 660, 896, 985
BspCNI	CTCAG	2 cut(s)	896, 1075
BspDI	ATCGAT	2 cut(s)	89, 957
BspPI	GGATC	1 cut(s)	839
BsrDI	GCAATG	1 cut(s)	1003
BsrI	ACTGG	3 cut(s)	208, 409, 661
BssECI	CCNNGG	3 cut(s)	195, 439, 849
BssMI	GATC	7 cut(s)	38, 86, 273, 360, 844, 954, 1047
BssSI	CACGAG	4 cut(s)	154, 387, 492, 528
BssT1I	CCWWGG	3 cut(s)	195, 439, 849
Bst2BI	CACGAG	4 cut(s)	154, 387, 492, 528
Bst4CI	ACNGT	1 cut(s)	796
Bst6I	CTCTTC	3 cut(s)	133, 187, 909
BstAPI	GCANNNNNTGC	2 cut(s)	1009, 1106
BstC8I	GCNNGC	9 cut(s)	115, 161, 165, 763, 898, 1010, 1014, 1094, 1098
BstDEI	CTNAG	4 cut(s)	277, 675, 883, 1083
BstF5I	GGATG	4 cut(s)	374, 490, 549, 610
BstKTI	GATC	7 cut(s)	41, 89, 276, 363, 847, 957, 1050
BstMAI	GTCTC	3 cut(s)	130, 395, 687
BstMBI	GATC	7 cut(s)	38, 86, 273, 360, 844, 954, 1047
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	6 cut(s)	569, 718, 812, 1009, 1106, 1123
BstNSI	RCATGY	2 cut(s)	1012, 1096
BstSLI	GKGCMC	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	299, 907
BstV2I	GAAGAC	2 cut(s)	329, 353
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
Bsu15I	ATCGAT	2 cut(s)	89, 957
BsuRI	GGCC	8 cut(s)	72, 137, 167, 563, 594, 660, 896, 985
BsuTUI	ATCGAT	2 cut(s)	89, 957
BtsCI	GGATG	4 cut(s)	374, 490, 549, 610
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	9 cut(s)	115, 161, 165, 763, 898, 1010, 1014, 1094, 1098
Cfr13I	GGNCC	3 cut(s)	443, 894, 983
ClaI	ATCGAT	2 cut(s)	89, 957
Csp6I	GTAC	1 cut(s)	880
CspCI	CAANNNNNGTGG	2 cut(s)	737, 772
CviAII	CATG	7 cut(s)	379, 428, 615, 901, 1000, 1009, 1093
CviQI	GTAC	1 cut(s)	880
DdeI	CTNAG	4 cut(s)	277, 675, 883, 1083
DpnI	GATC	7 cut(s)	40, 88, 275, 362, 846, 956, 1049
DpnII	GATC	7 cut(s)	38, 86, 273, 360, 844, 954, 1047
EaeI	YGGCCR	3 cut(s)	70, 561, 658
Eam1104I	CTCTTC	3 cut(s)	133, 187, 909
EarI	CTCTTC	3 cut(s)	133, 187, 909
Eco130I	CCWWGG	3 cut(s)	195, 439, 849
Eco32I	GATATC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	3 cut(s)	195, 439, 849
EcoT22I	ATGCAT	2 cut(s)	574, 1005
ErhI	CCWWGG	3 cut(s)	195, 439, 849
Esp3I	CGTCTC	2 cut(s)	130, 687
FaeI	CATG	7 cut(s)	382, 431, 618, 904, 1003, 1012, 1096
FatI	CATG	7 cut(s)	378, 427, 614, 900, 999, 1008, 1092
Fnu4HI	GCNGC	4 cut(s)	6, 9, 288, 921
FokI	GGATG	4 cut(s)	361, 497, 536, 597
Fsp4HI	GCNGC	4 cut(s)	6, 9, 288, 921
FspBI	CTAG	2 cut(s)	419, 440
GluI	GCNGC	4 cut(s)	6, 9, 288, 921
HaeIII	GGCC	8 cut(s)	72, 137, 167, 563, 594, 660, 896, 985
HapII	CCGG	4 cut(s)	69, 102, 134, 415
Hin1II	CATG	7 cut(s)	382, 431, 618, 904, 1003, 1012, 1096
HinfI	GANTC	3 cut(s)	91, 150, 1087
HpaII	CCGG	4 cut(s)	69, 102, 134, 415
Hpy166II	GTNNAC	2 cut(s)	712, 880
Hpy188I	TCNGA	6 cut(s)	38, 43, 83, 146, 886, 954
Hpy188III	TCNNGA	4 cut(s)	315, 457, 482, 545
Hpy8I	GTNNAC	2 cut(s)	712, 880
Hpy99I	CGWCG	2 cut(s)	87, 150
HpyAV	CCTTC	6 cut(s)	73, 198, 220, 292, 662, 796
HpyCH4III	ACNGT	1 cut(s)	796
HpyCH4V	TGCA	9 cut(s)	238, 368, 491, 572, 712, 923, 1003, 1008, 1096
HpyF10VI	GCNNNNNNNGC	6 cut(s)	569, 718, 812, 1009, 1106, 1123
HpyF3I	CTNAG	4 cut(s)	277, 675, 883, 1083
Hsp92II	CATG	7 cut(s)	382, 431, 618, 904, 1003, 1012, 1096
Kzo9I	GATC	7 cut(s)	38, 86, 273, 360, 844, 954, 1047
LmnI	GCTCC	1 cut(s)	866
Lsp1109I	GCAGC	2 cut(s)	299, 907
LweI	GCATC	2 cut(s)	581, 973
MaeI	CTAG	2 cut(s)	419, 440
MaeIII	GTNAC	1 cut(s)	1033
MalI	GATC	7 cut(s)	40, 88, 275, 362, 846, 956, 1049
MboI	GATC	7 cut(s)	38, 86, 273, 360, 844, 954, 1047
MboII	GAAGA	5 cut(s)	120, 174, 334, 358, 926
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	714
MlsI	TGGCCA	2 cut(s)	563, 660
MluCI	AATT	3 cut(s)	264, 621, 1060
MluNI	TGGCCA	2 cut(s)	563, 660
MmeI	TCCRAC	3 cut(s)	106, 169, 670
Mox20I	TGGCCA	2 cut(s)	563, 660
Mph1103I	ATGCAT	2 cut(s)	574, 1005
MscI	TGGCCA	2 cut(s)	563, 660
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	2 cut(s)	243, 521
Msp20I	TGGCCA	2 cut(s)	563, 660
MspA1I	CMGCKG	2 cut(s)	163, 290
MspI	CCGG	4 cut(s)	69, 102, 134, 415
Mva1269I	GAATGC	1 cut(s)	1111
MwoI	GCNNNNNNNGC	6 cut(s)	569, 718, 812, 1009, 1106, 1123
NdeII	GATC	7 cut(s)	38, 86, 273, 360, 844, 954, 1047
NlaIII	CATG	7 cut(s)	382, 431, 618, 904, 1003, 1012, 1096
NmuCI	GTSAC	1 cut(s)	1033
NsiI	ATGCAT	2 cut(s)	574, 1005
NspI	RCATGY	2 cut(s)	1012, 1096
PaeI	GCATGC	2 cut(s)	1012, 1096
PctI	GAATGC	1 cut(s)	1111
PfeI	GAWTC	3 cut(s)	91, 150, 1087
PkrI	GCNGC	4 cut(s)	7, 10, 289, 922
Ple19I	CGATCG	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	443
PspPI	GGNCC	3 cut(s)	443, 894, 983
PspPPI	RGGWCCY	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	273
PvuI	CGATCG	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	881
RsaNI	GTAC	1 cut(s)	880
RseI	CAYNNNNRTG	2 cut(s)	243, 521
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	4 cut(s)	6, 9, 288, 921
Sau3AI	GATC	7 cut(s)	38, 86, 273, 360, 844, 954, 1047
Sau96I	GGNCC	3 cut(s)	443, 894, 983
SduI	GDGCHC	1 cut(s)	714
SetI	ASST	9 cut(s)	165, 197, 427, 441, 448, 681, 775, 871, 1084
SfaNI	GCATC	2 cut(s)	581, 973
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	243, 521
SphI	GCATGC	2 cut(s)	1012, 1096
Sse9I	AATT	3 cut(s)	264, 621, 1060
SsiI	CCGC	3 cut(s)	5, 8, 290
SspMI	CTAG	2 cut(s)	419, 440
StyI	CCWWGG	3 cut(s)	195, 439, 849
TaaI	ACNGT	1 cut(s)	796
TaqI	TCGA	3 cut(s)	89, 957, 1050
TaqII	GACCGA	1 cut(s)	614
TasI	AATT	3 cut(s)	264, 621, 1060
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	3 cut(s)	91, 150, 1087
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	1033
TseI	GCWGC	2 cut(s)	287, 920
Tsp45I	GTSAC	1 cut(s)	1033
TspDTI	ATGAA	4 cut(s)	384, 986, 988, 1109
TspGWI	ACGGA	2 cut(s)	112, 711
TspRI	CASTG	1 cut(s)	309
VneI	GTGCAC	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	1060
XceI	RCATGY	2 cut(s)	1012, 1096
XmaJI	CCTAGG	1 cut(s)	439
XspI	CTAG	2 cut(s)	419, 440
Zsp2I	ATGCAT	2 cut(s)	574, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.