Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014325

Physical Location & Seq

Genomic Coordinates Forward (+)

8229968 .. 8232737

Gene Structure 2770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCGGCGGCGATTTCTTCCCCTCATCTTTTACTCCGATCAGACAGAGCCTCTCCCTCCTCCTTCTCCGGCCAGAGCCTCCGACGATCGCCTCCATTTTCCGGCAAGTTCGCCAGCATTTCCGTCTCTTCTCCGGCCTCGTTCCGACACATCTCGTGCCAGGCCTCCTCTACTGCCTCTTCGCCTTCAACCTTGGCAACTGGAACAGCAAAAGCCGAACAGAAGGATTTTTTGCACATAAATGATTTTGACAAATCCACAATTCTAAGGATCTTAGATAGAGCAGCGGAAGTGAAGGCACTGCTAAAATCAGGAGAGAATACATATCTCCCGTTTAAGGGGAAGACAATGGCTATGATCTTTGCAAAGCCATCCATGAGAACTCGTGTTTCATTTGAGACTGGGTTTTTCCGGCTAGGAGGTCATGCTATATACCTAGGACCTAATGATATCCAGATGGGAAAGAGGGAGGAAACTCGGGATGTTGCACGAGTTTTATCTCGTTATAATGACATTATTATGGCACGTGTATTTGCTCATCAGGACATCCTTGATTTGGCCAAATATGCATCTGTGCCTGTTGTCAATGGCCTGACAGACTACAACCATCCATGTCAAATTATGGCTGATGTCCTCACTATTATTGAACACATTGGCCAGTTAGAAGGAACTAAGGTTGTTTATGTTGGAGACGGAAACAACATTGTGCACTCTTGGCTGTTGATGGCTTCTGTTATTCCTTTCCACTTTGTTTGTGCTTGCCCTAAAGGTTTTGAACCAGATAAGGAAACTGTTGAGAAGGCACAACAGGCTGGTATCAGCAAGATTGAGATTACAAATGATCCCAAGGAAGCAGTCAAAGGAGCTGATGTTGTGTACTCAGATGTGTGGGCCAGCATGGGGCAAAAGGAAGAGGCTGCGTATCGCCACCAAGTATTTCAAGGATTTCAGATCGATGAGAATCTTATGAAGTTAGCAGGGCCAAACGCTTATTTCATGCATTGCTTGCCAGCAGAAAGAGGAGTGGAAGTGACTGATGGAGTGATCGAGGCTTCAAATTCCATCGTCTTTCCACAAGCTGAGAATCGCATGCACGCACAGAATGCCATAATGCTTCATCTGCTAGGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004585 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0016743 GO:0019627 GO:0019752 GO:0034641 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 map00220 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

377

Amino Acids

41.35

Weight (kDa)

6.9

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	75 - 216	4.7e-48	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	222 - 373	2e-58	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75330
fragaria_vesca	FvH4_2g39540
malus_domestica	MD08G1028500.v1.1 MD15G1024200.v1.1
prunus_persica	Prupe.1G376500_v2.0.a1
pyrus_communis	pycom08g02260 pycom15g02080
rosa_chinensis	RchiOBHm_Chr6g0301371
rosa_laevigata	RLG00000011256
rosa_multiflora	Rmu_sc0013354.1_g000027
rosa_roxburghii	Rroxscaffold_7G00166870
rosa_rugosa	Rorug06G0304300
rosa_samantha	Rh6AG417700 Rh6BG424400 Rh6CG431500 Rh6DG417400
rosa_wichuraiana	Rw6G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
AciI	CCGC	3 cut(s)	5, 8, 287
AclWI	GGATC	2 cut(s)	278, 836
AcoI	YGGCCR	3 cut(s)	70, 558, 655
AcsI	RAATTY	1 cut(s)	1057
AcvI	CACGTG	1 cut(s)	527
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	5 cut(s)	101, 337, 338, 556, 900
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	5 cut(s)	189, 647, 776, 941, 1056
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	866, 1079
AluI	AGCT	2 cut(s)	866, 1079
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	3 cut(s)	130, 392, 684
Alw44I	GTGCAC	1 cut(s)	707
AlwI	GGATC	2 cut(s)	278, 836
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	8 cut(s)	70, 135, 162, 558, 589, 655, 891, 980
ApaLI	GTGCAC	1 cut(s)	707
ApeKI	GCWGC	2 cut(s)	284, 917
ApoI	RAATTY	1 cut(s)	1057
AspA2I	CCTAGG	1 cut(s)	436
AspS9I	GGNCC	3 cut(s)	440, 891, 980
AvaI	CYCGRG	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	440
AvrII	CCTAGG	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	711
BalI	TGGCCA	2 cut(s)	560, 657
BauI	CACGAG	3 cut(s)	154, 384, 489
BbrPI	CACGTG	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	296, 904
BccI	CCATC	6 cut(s)	379, 451, 615, 718, 1031, 1070
BciT130I	CCWGG	1 cut(s)	161
BcoDI	GTCTC	3 cut(s)	130, 392, 684
BfaI	CTAG	3 cut(s)	416, 437, 1124
BisI	GCNGC	4 cut(s)	6, 9, 285, 918
BlnI	CCTAGG	1 cut(s)	436
BlsI	GCNGC	4 cut(s)	7, 10, 286, 919
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	3 cut(s)	440, 891, 980
BmrFI	CCNGG	1 cut(s)	161
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	578
BmuI	ACTGGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	954
BsaAI	YACGTR	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	960
BsaJI	CCNNGG	3 cut(s)	192, 436, 846
BsaXI	ACNNNNNCTCC	4 cut(s)	855, 885, 1014, 1044
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 337, 338, 556, 900
Bse1I	ACTGG	3 cut(s)	205, 406, 658
Bse3DI	GCAATG	1 cut(s)	1000
Bse8I	GATNNNNATC	1 cut(s)	960
BseBI	CCWGG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	954
BseDI	CCNNGG	3 cut(s)	192, 436, 846
BseGI	GGATG	4 cut(s)	371, 487, 546, 607
BseJI	GATNNNNATC	1 cut(s)	960
BseLI	CCNNNNNNNGG	5 cut(s)	101, 337, 338, 556, 900
BseMI	GCAATG	1 cut(s)	1000
BseMII	CTCAG	2 cut(s)	894, 1071
BseNI	ACTGG	3 cut(s)	205, 406, 658
BseRI	GAGGAG	3 cut(s)	49, 157, 1035
BseSI	GKGCMC	1 cut(s)	711
BseXI	GCAGC	2 cut(s)	296, 904
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	8 cut(s)	72, 137, 164, 560, 591, 657, 893, 982
BshVI	ATCGAT	1 cut(s)	954
BsiEI	CGRYCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	711
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	4 cut(s)	69, 102, 134, 412
BslI	CCNNNNNNNGG	5 cut(s)	101, 337, 338, 556, 900
BsmAI	GTCTC	3 cut(s)	130, 392, 684
BsmBI	CGTCTC	2 cut(s)	130, 684
BsmI	GAATGC	1 cut(s)	1108
BsnI	GGCC	8 cut(s)	72, 137, 164, 560, 591, 657, 893, 982
BsoBI	CYCGRG	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	7 cut(s)	38, 86, 270, 357, 841, 951, 1044
BspACI	CCGC	3 cut(s)	5, 8, 287
BspANI	GGCC	8 cut(s)	72, 137, 164, 560, 591, 657, 893, 982
BspCNI	CTCAG	2 cut(s)	893, 1072
BspDI	ATCGAT	1 cut(s)	954
BspPI	GGATC	2 cut(s)	278, 836
BsrDI	GCAATG	1 cut(s)	1000
BsrI	ACTGG	3 cut(s)	205, 406, 658
BssECI	CCNNGG	3 cut(s)	192, 436, 846
BssMI	GATC	7 cut(s)	38, 86, 270, 357, 841, 951, 1044
BssSI	CACGAG	3 cut(s)	154, 384, 489
BssT1I	CCWWGG	3 cut(s)	192, 436, 846
Bst2BI	CACGAG	3 cut(s)	154, 384, 489
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	793
Bst6I	CTCTTC	3 cut(s)	133, 184, 906
BstAPI	GCANNNNNTGC	2 cut(s)	1006, 1103
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	7 cut(s)	115, 760, 895, 1007, 1011, 1091, 1095
BstDEI	CTNAG	5 cut(s)	266, 274, 672, 880, 1080
BstF5I	GGATG	4 cut(s)	371, 487, 546, 607
BstKTI	GATC	7 cut(s)	41, 89, 273, 360, 844, 954, 1047
BstMAI	GTCTC	3 cut(s)	130, 392, 684
BstMBI	GATC	7 cut(s)	38, 86, 270, 357, 841, 951, 1044
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	6 cut(s)	566, 715, 809, 1006, 1103, 1120
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	1093
BstSCI	CCNGG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	711
BstV1I	GCAGC	2 cut(s)	296, 904
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	954
BsuRI	GGCC	8 cut(s)	72, 137, 164, 560, 591, 657, 893, 982
BsuTUI	ATCGAT	1 cut(s)	954
BtsCI	GGATG	4 cut(s)	371, 487, 546, 607
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	7 cut(s)	115, 760, 895, 1007, 1011, 1091, 1095
Cfr13I	GGNCC	3 cut(s)	440, 891, 980
ClaI	ATCGAT	1 cut(s)	954
Csp6I	GTAC	1 cut(s)	877
CspCI	CAANNNNNGTGG	2 cut(s)	734, 769
CviAII	CATG	6 cut(s)	376, 425, 612, 898, 997, 1090
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	5 cut(s)	266, 274, 672, 880, 1080
DpnI	GATC	7 cut(s)	40, 88, 272, 359, 843, 953, 1046
DpnII	GATC	7 cut(s)	38, 86, 270, 357, 841, 951, 1044
EaeI	YGGCCR	3 cut(s)	70, 558, 655
Eam1104I	CTCTTC	3 cut(s)	133, 184, 906
EarI	CTCTTC	3 cut(s)	133, 184, 906
Eco130I	CCWWGG	3 cut(s)	192, 436, 846
Eco147I	AGGCCT	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	440
Eco72I	CACGTG	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	451
EcoT14I	CCWWGG	3 cut(s)	192, 436, 846
EcoT22I	ATGCAT	2 cut(s)	571, 1002
ErhI	CCWWGG	3 cut(s)	192, 436, 846
Esp3I	CGTCTC	2 cut(s)	130, 684
FaeI	CATG	6 cut(s)	379, 428, 615, 901, 1000, 1093
FatI	CATG	6 cut(s)	375, 424, 611, 897, 996, 1089
Fnu4HI	GCNGC	4 cut(s)	6, 9, 285, 918
FokI	GGATG	4 cut(s)	358, 494, 533, 594
Fsp4HI	GCNGC	4 cut(s)	6, 9, 285, 918
FspBI	CTAG	3 cut(s)	416, 437, 1124
GluI	GCNGC	4 cut(s)	6, 9, 285, 918
HaeIII	GGCC	8 cut(s)	72, 137, 164, 560, 591, 657, 893, 982
HapII	CCGG	4 cut(s)	69, 102, 134, 412
Hin1II	CATG	6 cut(s)	379, 428, 615, 901, 1000, 1093
HinfI	GANTC	2 cut(s)	961, 1084
HpaII	CCGG	4 cut(s)	69, 102, 134, 412
Hpy166II	GTNNAC	2 cut(s)	709, 877
Hpy188I	TCNGA	6 cut(s)	38, 43, 83, 146, 883, 951
Hpy188III	TCNNGA	4 cut(s)	312, 454, 479, 542
Hpy8I	GTNNAC	2 cut(s)	709, 877
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	6 cut(s)	73, 195, 217, 289, 659, 793
HpyCH4III	ACNGT	1 cut(s)	793
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	7 cut(s)	235, 365, 488, 569, 709, 1000, 1093
HpyF10VI	GCNNNNNNNGC	6 cut(s)	566, 715, 809, 1006, 1103, 1120
HpyF3I	CTNAG	5 cut(s)	266, 274, 672, 880, 1080
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	6 cut(s)	379, 428, 615, 901, 1000, 1093
Kzo9I	GATC	7 cut(s)	38, 86, 270, 357, 841, 951, 1044
LmnI	GCTCC	1 cut(s)	863
Lsp1109I	GCAGC	2 cut(s)	296, 904
LweI	GCATC	1 cut(s)	578
MaeI	CTAG	3 cut(s)	416, 437, 1124
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	1 cut(s)	1030
MalI	GATC	7 cut(s)	40, 88, 272, 359, 843, 953, 1046
MboI	GATC	7 cut(s)	38, 86, 270, 357, 841, 951, 1044
MboII	GAAGA	5 cut(s)	9, 120, 171, 355, 923
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	711
MlsI	TGGCCA	2 cut(s)	560, 657
MluCI	AATT	3 cut(s)	261, 618, 1057
MluNI	TGGCCA	2 cut(s)	560, 657
MmeI	TCCRAC	3 cut(s)	106, 169, 667
Mox20I	TGGCCA	2 cut(s)	560, 657
Mph1103I	ATGCAT	2 cut(s)	571, 1002
MscI	TGGCCA	2 cut(s)	560, 657
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	240, 518
Msp20I	TGGCCA	2 cut(s)	560, 657
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	4 cut(s)	69, 102, 134, 412
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	1108
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	6 cut(s)	566, 715, 809, 1006, 1103, 1120
NdeII	GATC	7 cut(s)	38, 86, 270, 357, 841, 951, 1044
NlaIII	CATG	6 cut(s)	379, 428, 615, 901, 1000, 1093
NmuCI	GTSAC	1 cut(s)	1030
NsiI	ATGCAT	2 cut(s)	571, 1002
NspI	RCATGY	1 cut(s)	1093
PaeI	GCATGC	1 cut(s)	1093
PceI	AGGCCT	1 cut(s)	164
PctI	GAATGC	1 cut(s)	1108
PfeI	GAWTC	2 cut(s)	961, 1084
PkrI	GCNGC	4 cut(s)	7, 10, 286, 919
Ple19I	CGATCG	1 cut(s)	89
PmaCI	CACGTG	1 cut(s)	527
PmlI	CACGTG	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	527
PpuMI	RGGWCCY	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	507
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	159
PspCI	CACGTG	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	159
PspPI	GGNCC	3 cut(s)	440, 891, 980
PspPPI	RGGWCCY	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	270
PvuI	CGATCG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
RseI	CAYNNNNRTG	2 cut(s)	240, 518
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	4 cut(s)	6, 9, 285, 918
Sau3AI	GATC	7 cut(s)	38, 86, 270, 357, 841, 951, 1044
Sau96I	GGNCC	3 cut(s)	440, 891, 980
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	711
SetI	ASST	9 cut(s)	194, 424, 438, 445, 529, 678, 772, 868, 1081
SfaNI	GCATC	1 cut(s)	578
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	2 cut(s)	240, 518
SphI	GCATGC	1 cut(s)	1093
Sse9I	AATT	3 cut(s)	261, 618, 1057
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	3 cut(s)	5, 8, 287
SspMI	CTAG	3 cut(s)	416, 437, 1124
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	3 cut(s)	192, 436, 846
TaaI	ACNGT	1 cut(s)	793
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	2 cut(s)	954, 1047
TasI	AATT	3 cut(s)	261, 618, 1057
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	2 cut(s)	961, 1084
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	1030
TseI	GCWGC	2 cut(s)	284, 917
Tsp45I	GTSAC	1 cut(s)	1030
TspDTI	ATGAA	4 cut(s)	381, 983, 985, 1106
TspGWI	ACGGA	2 cut(s)	112, 708
TspRI	CASTG	1 cut(s)	306
VneI	GTGCAC	1 cut(s)	707
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	1057
XceI	RCATGY	1 cut(s)	1093
XmaJI	CCTAGG	1 cut(s)	436
XspI	CTAG	3 cut(s)	416, 437, 1124
Zsp2I	ATGCAT	2 cut(s)	571, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.