Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014325

Physical Location & Seq

Genomic Coordinates Reverse (-)

60062381 .. 60064846

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG417400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCGGCGGCGATTTCTTCCTCTCATCTTTTACTCCGATCAGACAGAGCCTCTCCCTCCTCCTTCTCCGGCCAGAGCCTCAGACGATCGCCTCCATTTTCCGGCAAGTTCGCCAGCATTTCCGTCTCTTCTCCGGCCTCGTTCTCGTTCCGAAGAATCTCGTGCCAGGCCTCCTCTACTGCCTCTTCGCCTTCAACCTTGGCAACTGGAACAGCAAAAGCCGAACAGAAGGATTTTTTGCACATAAATGATTTTGACAAATCCACAATTCTAAAGATCTTAGATAGAGCAGCGGAAGTGAAGGCACTGCTAAAATCAGGAGAGAAGACATATCTCCCGTTTAAGGGGAAGACAATGGCTATGATCTTTGCAAAGCCATCCATGAGAACTCGTGTTTCATTTGAGACTGGGTTTTCCCGGCTAGGAGGTCATGCTATATACCTAGGACCTAATGATATCCAGATGGGAAAGAGGGAGGAAACTCGGGATGTTGCACGAGTTTTATCTCGCTATAATGACATTATTATGGCACGTGTATTTGCTCATCAGGACATCCTTGATTTGGCCAAATATGCATCTGTGCCTGTTGTCAATGGCCTGACAGACTACAACCATCCATGTCAAATTATGGCTGATGTCCTCACTATTATTGAACACATTGGCCAGTTAGAAGGAACTAAGGTTGTTTATGTTGGAGACGGAAACAACATTGTGCACTCTTGGCTGTTGATGGCTTCTGTTATTCCTTTCCACTTTGTTTGTGCTTGCCCTAAAGGTTTTGAACCAGATAAGGAAACTGTTGAGAAGGCACAACAGGCTGGTATCAGCAAGATTGAGATTACAAATGATCCCAAGGACGCAGTCAAAGGAGCTGATGTTGTGTACTCAGATGTGTGGGCCAGCATGGGGCAAAAGGAAGAGGCTGCGTATCGCCACCAAGTATTTCAAGGATTTCAGATCGATGAGAATCTTATGAAGTTAGCAGGGCCAAACGCTTATTTCATGCATTGCTTGCCAGCAGAAAGAGGAGTGGAAGTGACTGATGGAGTGATCGAGGCTTCAAATTCCATCGTCTTTCCACAAGCTGAGAATCGCATGCACGCACAGAATGCCATAATGCTTCATCTGCTTGGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004585 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0016743 GO:0019627 GO:0019752 GO:0034641 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 map00220 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

379

Amino Acids

41.51

Weight (kDa)

7.71

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	77 - 218	9.4e-49	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	224 - 375	3.3e-58	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75330
fragaria_vesca	FvH4_2g39540
malus_domestica	MD08G1028500.v1.1 MD15G1024200.v1.1
prunus_persica	Prupe.1G376500_v2.0.a1
pyrus_communis	pycom08g02260 pycom15g02080
rosa_chinensis	RchiOBHm_Chr6g0301371
rosa_laevigata	RLG00000011256
rosa_multiflora	Rmu_sc0013354.1_g000027
rosa_roxburghii	Rroxscaffold_7G00166870
rosa_rugosa	Rorug06G0304300
rosa_samantha	Rh6AG417700 Rh6BG424400 Rh6CG431500 Rh6DG417400
rosa_wichuraiana	Rw6G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 8, 293
AclWI	GGATC	1 cut(s)	842
AcoI	YGGCCR	3 cut(s)	70, 564, 661
AcsI	RAATTY	1 cut(s)	1063
AcvI	CACGTG	1 cut(s)	533
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	5 cut(s)	101, 343, 344, 562, 906
AflIII	ACRYGT	1 cut(s)	532
AgsI	TTSAA	5 cut(s)	195, 653, 782, 947, 1062
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	872, 1085
AluI	AGCT	2 cut(s)	872, 1085
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	3 cut(s)	130, 398, 690
Alw44I	GTGCAC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	842
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	8 cut(s)	70, 135, 168, 564, 595, 661, 897, 986
ApaLI	GTGCAC	1 cut(s)	713
ApeKI	GCWGC	2 cut(s)	290, 923
ApoI	RAATTY	1 cut(s)	1063
AspA2I	CCTAGG	1 cut(s)	442
AspS9I	GGNCC	3 cut(s)	446, 897, 986
AsuC2I	CCSGG	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	446
AvrII	CCTAGG	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	717
BalI	TGGCCA	2 cut(s)	566, 663
BauI	CACGAG	3 cut(s)	160, 390, 495
BbrPI	CACGTG	1 cut(s)	533
BbsI	GAAGAC	2 cut(s)	332, 356
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	2 cut(s)	302, 910
BccI	CCATC	6 cut(s)	385, 457, 621, 724, 1037, 1076
BciT130I	CCWGG	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	130, 398, 690
BfaI	CTAG	2 cut(s)	422, 443
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	4 cut(s)	6, 9, 291, 924
BlnI	CCTAGG	1 cut(s)	442
BlsI	GCNGC	4 cut(s)	7, 10, 292, 925
Bme1390I	CCNGG	2 cut(s)	167, 418
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	3 cut(s)	446, 897, 986
BmrFI	CCNGG	2 cut(s)	167, 418
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	584
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	2 cut(s)	332, 356
BpuMI	CCSGG	1 cut(s)	418
Bsa29I	ATCGAT	1 cut(s)	960
BsaAI	YACGTR	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	966
BsaJI	CCNNGG	3 cut(s)	198, 442, 852
BsaXI	ACNNNNNCTCC	4 cut(s)	861, 891, 1020, 1050
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 343, 344, 562, 906
Bse1I	ACTGG	3 cut(s)	211, 412, 664
Bse3DI	GCAATG	1 cut(s)	1006
Bse8I	GATNNNNATC	1 cut(s)	966
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	960
BseDI	CCNNGG	3 cut(s)	198, 442, 852
BseGI	GGATG	4 cut(s)	377, 493, 552, 613
BseJI	GATNNNNATC	1 cut(s)	966
BseLI	CCNNNNNNNGG	5 cut(s)	101, 343, 344, 562, 906
BseMI	GCAATG	1 cut(s)	1006
BseMII	CTCAG	3 cut(s)	94, 900, 1077
BseNI	ACTGG	3 cut(s)	211, 412, 664
BseRI	GAGGAG	3 cut(s)	49, 163, 1041
BseSI	GKGCMC	1 cut(s)	717
BseXI	GCAGC	2 cut(s)	302, 910
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	8 cut(s)	72, 137, 170, 566, 597, 663, 899, 988
BshVI	ATCGAT	1 cut(s)	960
BsiEI	CGRYCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	4 cut(s)	69, 102, 134, 418
BslI	CCNNNNNNNGG	5 cut(s)	101, 343, 344, 562, 906
BsmAI	GTCTC	3 cut(s)	130, 398, 690
BsmBI	CGTCTC	2 cut(s)	130, 690
BsmI	GAATGC	1 cut(s)	1114
BsnI	GGCC	8 cut(s)	72, 137, 170, 566, 597, 663, 899, 988
BsoBI	CYCGRG	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	7 cut(s)	38, 86, 276, 363, 847, 957, 1050
BspACI	CCGC	3 cut(s)	5, 8, 293
BspANI	GGCC	8 cut(s)	72, 137, 170, 566, 597, 663, 899, 988
BspCNI	CTCAG	3 cut(s)	93, 899, 1078
BspDI	ATCGAT	1 cut(s)	960
BspPI	GGATC	1 cut(s)	842
BsrDI	GCAATG	1 cut(s)	1006
BsrI	ACTGG	3 cut(s)	211, 412, 664
BssECI	CCNNGG	3 cut(s)	198, 442, 852
BssMI	GATC	7 cut(s)	38, 86, 276, 363, 847, 957, 1050
BssSI	CACGAG	3 cut(s)	160, 390, 495
BssT1I	CCWWGG	3 cut(s)	198, 442, 852
Bst2BI	CACGAG	3 cut(s)	160, 390, 495
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	799
Bst6I	CTCTTC	3 cut(s)	133, 190, 912
BstAPI	GCANNNNNTGC	2 cut(s)	1012, 1109
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	7 cut(s)	115, 766, 901, 1013, 1017, 1097, 1101
BstDEI	CTNAG	5 cut(s)	80, 280, 678, 886, 1086
BstF5I	GGATG	4 cut(s)	377, 493, 552, 613
BstKTI	GATC	7 cut(s)	41, 89, 279, 366, 850, 960, 1053
BstMAI	GTCTC	3 cut(s)	130, 398, 690
BstMBI	GATC	7 cut(s)	38, 86, 276, 363, 847, 957, 1050
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	6 cut(s)	572, 721, 815, 1012, 1109, 1126
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	1099
BstSCI	CCNGG	2 cut(s)	165, 416
BstSLI	GKGCMC	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	302, 910
BstV2I	GAAGAC	2 cut(s)	332, 356
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	960
BsuRI	GGCC	8 cut(s)	72, 137, 170, 566, 597, 663, 899, 988
BsuTUI	ATCGAT	1 cut(s)	960
BtsCI	GGATG	4 cut(s)	377, 493, 552, 613
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	7 cut(s)	115, 766, 901, 1013, 1017, 1097, 1101
Cfr13I	GGNCC	3 cut(s)	446, 897, 986
ClaI	ATCGAT	1 cut(s)	960
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	1 cut(s)	883
CspCI	CAANNNNNGTGG	2 cut(s)	740, 775
CviAII	CATG	6 cut(s)	382, 431, 618, 904, 1003, 1096
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	5 cut(s)	80, 280, 678, 886, 1086
DpnI	GATC	7 cut(s)	40, 88, 278, 365, 849, 959, 1052
DpnII	GATC	7 cut(s)	38, 86, 276, 363, 847, 957, 1050
EaeI	YGGCCR	3 cut(s)	70, 564, 661
Eam1104I	CTCTTC	3 cut(s)	133, 190, 912
EarI	CTCTTC	3 cut(s)	133, 190, 912
Eco130I	CCWWGG	3 cut(s)	198, 442, 852
Eco147I	AGGCCT	1 cut(s)	170
Eco32I	GATATC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	446
Eco72I	CACGTG	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	457
EcoT14I	CCWWGG	3 cut(s)	198, 442, 852
EcoT22I	ATGCAT	2 cut(s)	577, 1008
ErhI	CCWWGG	3 cut(s)	198, 442, 852
Esp3I	CGTCTC	2 cut(s)	130, 690
FaeI	CATG	6 cut(s)	385, 434, 621, 907, 1006, 1099
FatI	CATG	6 cut(s)	381, 430, 617, 903, 1002, 1095
Fnu4HI	GCNGC	4 cut(s)	6, 9, 291, 924
FokI	GGATG	4 cut(s)	364, 500, 539, 600
Fsp4HI	GCNGC	4 cut(s)	6, 9, 291, 924
FspBI	CTAG	2 cut(s)	422, 443
GluI	GCNGC	4 cut(s)	6, 9, 291, 924
HaeIII	GGCC	8 cut(s)	72, 137, 170, 566, 597, 663, 899, 988
HapII	CCGG	4 cut(s)	69, 102, 134, 418
HgaI	GACGC	1 cut(s)	866
Hin1II	CATG	6 cut(s)	385, 434, 621, 907, 1006, 1099
HinfI	GANTC	3 cut(s)	156, 967, 1090
HpaII	CCGG	4 cut(s)	69, 102, 134, 418
Hpy166II	GTNNAC	2 cut(s)	715, 883
Hpy188I	TCNGA	6 cut(s)	38, 43, 83, 152, 889, 957
Hpy188III	TCNNGA	4 cut(s)	318, 460, 485, 548
Hpy8I	GTNNAC	2 cut(s)	715, 883
HpyAV	CCTTC	6 cut(s)	73, 201, 223, 295, 665, 799
HpyCH4III	ACNGT	1 cut(s)	799
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	7 cut(s)	241, 371, 494, 575, 715, 1006, 1099
HpyF10VI	GCNNNNNNNGC	6 cut(s)	572, 721, 815, 1012, 1109, 1126
HpyF3I	CTNAG	5 cut(s)	80, 280, 678, 886, 1086
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	6 cut(s)	385, 434, 621, 907, 1006, 1099
Kzo9I	GATC	7 cut(s)	38, 86, 276, 363, 847, 957, 1050
LmnI	GCTCC	1 cut(s)	869
Lsp1109I	GCAGC	2 cut(s)	302, 910
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	2 cut(s)	422, 443
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	1036
MalI	GATC	7 cut(s)	40, 88, 278, 365, 849, 959, 1052
MboI	GATC	7 cut(s)	38, 86, 276, 363, 847, 957, 1050
MboII	GAAGA	7 cut(s)	9, 120, 165, 177, 337, 361, 929
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	717
MlsI	TGGCCA	2 cut(s)	566, 663
MluCI	AATT	3 cut(s)	267, 624, 1063
MluNI	TGGCCA	2 cut(s)	566, 663
MmeI	TCCRAC	1 cut(s)	673
Mox20I	TGGCCA	2 cut(s)	566, 663
Mph1103I	ATGCAT	2 cut(s)	577, 1008
MscI	TGGCCA	2 cut(s)	566, 663
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	2 cut(s)	246, 524
Msp20I	TGGCCA	2 cut(s)	566, 663
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	4 cut(s)	69, 102, 134, 418
MspR9I	CCNGG	2 cut(s)	167, 418
Mva1269I	GAATGC	1 cut(s)	1114
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	6 cut(s)	572, 721, 815, 1012, 1109, 1126
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	7 cut(s)	38, 86, 276, 363, 847, 957, 1050
NlaIII	CATG	6 cut(s)	385, 434, 621, 907, 1006, 1099
NmuCI	GTSAC	1 cut(s)	1036
NsiI	ATGCAT	2 cut(s)	577, 1008
NspI	RCATGY	1 cut(s)	1099
PaeI	GCATGC	1 cut(s)	1099
PceI	AGGCCT	1 cut(s)	170
PctI	GAATGC	1 cut(s)	1114
PfeI	GAWTC	3 cut(s)	156, 967, 1090
PflFI	GACNNNGTC	1 cut(s)	860
PkrI	GCNGC	4 cut(s)	7, 10, 292, 925
Ple19I	CGATCG	1 cut(s)	89
PmaCI	CACGTG	1 cut(s)	533
PmlI	CACGTG	1 cut(s)	533
Ppu21I	YACGTR	1 cut(s)	533
PpuMI	RGGWCCY	1 cut(s)	446
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	165
PspCI	CACGTG	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	165
PspPI	GGNCC	3 cut(s)	446, 897, 986
PspPPI	RGGWCCY	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	276
PsyI	GACNNNGTC	1 cut(s)	860
PvuI	CGATCG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
RseI	CAYNNNNRTG	2 cut(s)	246, 524
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	6, 9, 291, 924
Sau3AI	GATC	7 cut(s)	38, 86, 276, 363, 847, 957, 1050
Sau96I	GGNCC	3 cut(s)	446, 897, 986
ScrFI	CCNGG	2 cut(s)	167, 418
SduI	GDGCHC	1 cut(s)	717
SetI	ASST	9 cut(s)	200, 430, 444, 451, 535, 684, 778, 874, 1087
SfaNI	GCATC	1 cut(s)	584
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	246, 524
SphI	GCATGC	1 cut(s)	1099
Sse9I	AATT	3 cut(s)	267, 624, 1063
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	3 cut(s)	5, 8, 293
SspMI	CTAG	2 cut(s)	422, 443
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	165, 416
StyI	CCWWGG	3 cut(s)	198, 442, 852
TaaI	ACNGT	1 cut(s)	799
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	2 cut(s)	960, 1053
TasI	AATT	3 cut(s)	267, 624, 1063
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	3 cut(s)	156, 967, 1090
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	1036
TseI	GCWGC	2 cut(s)	290, 923
Tsp45I	GTSAC	1 cut(s)	1036
TspDTI	ATGAA	4 cut(s)	387, 989, 991, 1112
TspGWI	ACGGA	2 cut(s)	112, 714
TspRI	CASTG	1 cut(s)	312
Tth111I	GACNNNGTC	1 cut(s)	860
VneI	GTGCAC	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	1063
XceI	RCATGY	1 cut(s)	1099
XmaJI	CCTAGG	1 cut(s)	442
XspI	CTAG	2 cut(s)	422, 443
Zsp2I	ATGCAT	2 cut(s)	577, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.