Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014325

Physical Location & Seq

Genomic Coordinates Forward (+)

1231457 .. 1233977

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCGGCGGCGATTTCTTCTCACTTCGCGTTCCTATCAGACAAACCCTCTCTCTCCTCTTCACTTTCCTCTTTCTCCGGCCAGAGTCTCCACCGATCGCCTCGATGCTCCGCCGCCGTGGTCAGCAGCATTTCCCTGCCGTCTCCGGCGAGACTCCGACGAATCTCGTGCCAGACCTCCTCCGTTACTTCTTCGCCTTCGTCCATCGCCAACGTAACAGCAAAAGCAGAACTGAAGGATTTCTTGCACATAAGTGATTTTGACAAAGCCACCATTCTGAAGATGTTAGATCGAGCTGCAGAGGTCAAGGCACTTCTCAAATCAGGGGACAGGTCATTTCAACCATTTAAGGGGAAGACAATGGCTATGATCTTTGCAAAGCCTTCCATGAGAACACGTGTTTCATTTGAGACTGGGTTTTTCTTGCTAGGTGGTCATGCCATATACTTGGGTCCTAATGACATCCAAATGGGTAAGCGGGAGGAAACTCGGGATGTCGCACGTGTTCTGTCTCGCTATAATGACATTATTATGGCGCGTGTCTTTGCTCATCAGGATATCCTTGATTTGGCTAAATATGCAACCGTACCTGTTGTCAATGGCTTGACAGACTACAACCATCCCTGTCAAATTATGGCTGATGTCCTCACTATCATCGAACACATTGGTCGGATAGAAGGAACTAAGGTTGTCTATGTTGGAGATGGAAACAACATTGTCCACTCTTGGTTGCTGATGGCTGCTGTTATTCCTTTCCACTTCGTTTGTGCCTGTCCAAAAGGTTTTGAACCAGATAAGAAAACAGTTGAGAAGGCACAGCAGGCTGGTATCAGCAAGATTGAGATTACAAATGATCCAAAGGAAGCAGTCAAGGGAGCAGATGTTGTGTACTCAGATGTGTGGGCTAGCATGGGGCAAAAGGAGGAGGCTGATTCTCGCCGTAAAATTTTCCGAGGATTTCAGGTTGATGAAAATCTCATGAAGATAGCAGGCCCCAAAGCCTATTTCATGCATTGTTTGCCAGCGGAAAGAGGGGTGGAAGTGACTGACGGGGTGGTTGAGGCTCCAAATTCTATCGTCTTTCCACAAGCTGAGAATCGGATGCATGCACAGAATGCTGTCATGCTTCATCTGCTCGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004585 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0016743 GO:0019627 GO:0019752 GO:0034641 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 map00220 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

382

Amino Acids

41.76

Weight (kDa)

8.78

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75330
fragaria_vesca	FvH4_2g39540
malus_domestica	MD08G1028500.v1.1 MD15G1024200.v1.1
prunus_persica	Prupe.1G376500_v2.0.a1
pyrus_communis	pycom08g02260 pycom15g02080
rosa_chinensis	RchiOBHm_Chr6g0301371
rosa_laevigata	RLG00000011256
rosa_multiflora	Rmu_sc0013354.1_g000027
rosa_roxburghii	Rroxscaffold_7G00166870
rosa_rugosa	Rorug06G0304300
rosa_samantha	Rh6AG417700 Rh6BG424400 Rh6CG431500 Rh6DG417400
rosa_wichuraiana	Rw6G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 538
AciI	CCGC	6 cut(s)	5, 8, 111, 114, 478, 1025
AclWI	GGATC	1 cut(s)	848
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	945, 1069
AcuI	CTGAAG	2 cut(s)	254, 299
AcvI	CACGTG	2 cut(s)	398, 503
AfaI	GTAC	2 cut(s)	588, 890
AfiI	CCNNNNNNNGG	2 cut(s)	350, 568
AflIII	ACRYGT	3 cut(s)	395, 397, 502
AgsI	TTSAA	2 cut(s)	341, 788
AjuI	GAANNNNNNNTTGG	2 cut(s)	989, 1021
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	2 cut(s)	296, 1091
AluI	AGCT	2 cut(s)	296, 1091
Alw26I	GTCTC	5 cut(s)	92, 145, 147, 404, 516
AlwI	GGATC	1 cut(s)	848
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	2 cut(s)	79, 991
ApeKI	GCWGC	3 cut(s)	126, 296, 740
ApoI	RAATTY	2 cut(s)	945, 1069
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	2 cut(s)	452, 992
AsuNHI	GCTAGC	1 cut(s)	905
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	452
BauI	CACGAG	1 cut(s)	166
BbrPI	CACGTG	2 cut(s)	398, 503
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	138, 283, 727
BccI	CCATC	4 cut(s)	212, 627, 698, 730
BceAI	ACGGC	3 cut(s)	101, 124, 924
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BcoDI	GTCTC	5 cut(s)	92, 145, 147, 404, 516
BfaI	CTAG	2 cut(s)	428, 906
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
BlsI	GCNGC	6 cut(s)	7, 10, 115, 128, 298, 742
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	452, 992
BmiI	GGNNCC	3 cut(s)	453, 994, 1065
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	2 cut(s)	95, 1092
BmtI	GCTAGC	1 cut(s)	909
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	362
BsaAI	YACGTR	2 cut(s)	398, 503
BsaBI	GATNNNNATC	1 cut(s)	972
BsaJI	CCNNGG	2 cut(s)	117, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 568
Bse1I	ACTGG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	972
BseDI	CCNNGG	2 cut(s)	117, 952
BseGI	GGATG	4 cut(s)	462, 499, 619, 1107
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	2 cut(s)	350, 568
BseMII	CTCAG	2 cut(s)	906, 1083
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	3 cut(s)	46, 169, 938
BseXI	GCAGC	3 cut(s)	138, 283, 727
Bsh1236I	CGCG	2 cut(s)	29, 538
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	81, 993
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	78, 146
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	350, 568
BsmAI	GTCTC	5 cut(s)	92, 145, 147, 404, 516
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	1120
BsnI	GGCC	2 cut(s)	81, 993
BsoBI	CYCGRG	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	95, 289, 369, 853
BspACI	CCGC	6 cut(s)	5, 8, 111, 114, 478, 1025
BspANI	GGCC	2 cut(s)	81, 993
BspCNI	CTCAG	2 cut(s)	905, 1084
BspFNI	CGCG	2 cut(s)	29, 538
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	3 cut(s)	453, 994, 1065
BspMAI	CTGCAG	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	909
BspPI	GGATC	1 cut(s)	848
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	117, 952
BssMI	GATC	4 cut(s)	95, 289, 369, 853
BssSI	CACGAG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	586, 805
Bst6I	CTCTTC	1 cut(s)	64
BstAPI	GCANNNNNTGC	2 cut(s)	1018, 1115
BstBAI	YACGTR	2 cut(s)	398, 503
BstC8I	GCNNGC	5 cut(s)	822, 907, 991, 1023, 1107
BstDEI	CTNAG	3 cut(s)	684, 892, 1092
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	4 cut(s)	462, 499, 619, 1107
BstFNI	CGCG	2 cut(s)	29, 538
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	4 cut(s)	98, 292, 372, 856
BstMAI	GTCTC	5 cut(s)	92, 145, 147, 404, 516
BstMBI	GATC	4 cut(s)	95, 289, 369, 853
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	5 cut(s)	578, 821, 1018, 1115, 1132
BstNSI	RCATGY	1 cut(s)	1109
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	29, 538
BstV1I	GCAGC	3 cut(s)	138, 283, 727
BstV2I	GAAGAC	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	81, 993
BtgI	CCRYGG	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	4 cut(s)	462, 499, 619, 1107
Cac8I	GCNNGC	5 cut(s)	822, 907, 991, 1023, 1107
CciI	TCATGA	1 cut(s)	978
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	2 cut(s)	452, 992
Csp6I	GTAC	2 cut(s)	587, 889
CspCI	CAANNNNNGTGG	2 cut(s)	746, 781
CviAII	CATG	7 cut(s)	388, 437, 910, 979, 1009, 1106, 1123
CviQI	GTAC	2 cut(s)	587, 889
DdeI	CTNAG	3 cut(s)	684, 892, 1092
DpnI	GATC	4 cut(s)	97, 291, 371, 855
DpnII	GATC	4 cut(s)	95, 289, 369, 853
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	254, 299
Eco72I	CACGTG	2 cut(s)	398, 503
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	2 cut(s)	452, 992
EcoRV	GATATC	1 cut(s)	559
EcoT22I	ATGCAT	2 cut(s)	1014, 1107
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	7 cut(s)	391, 440, 913, 982, 1012, 1109, 1126
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	7 cut(s)	387, 436, 909, 978, 1008, 1105, 1122
FauI	CCCGC	1 cut(s)	471
Fnu4HI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
FokI	GGATG	4 cut(s)	449, 506, 606, 1114
Fsp4HI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
FspBI	CTAG	2 cut(s)	428, 906
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
HaeIII	GGCC	2 cut(s)	81, 993
HapII	CCGG	2 cut(s)	78, 146
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	7 cut(s)	391, 440, 913, 982, 1012, 1109, 1126
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HinfI	GANTC	5 cut(s)	85, 153, 162, 932, 1096
HpaII	CCGG	2 cut(s)	78, 146
Hpy166II	GTNNAC	2 cut(s)	721, 889
Hpy188I	TCNGA	8 cut(s)	40, 158, 279, 672, 895, 953, 1101, 1139
Hpy188III	TCNNGA	3 cut(s)	491, 554, 979
Hpy8I	GTNNAC	2 cut(s)	721, 889
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	5 cut(s)	207, 229, 393, 671, 805
HpyCH4III	ACNGT	2 cut(s)	586, 805
HpyCH4IV	ACGT	3 cut(s)	213, 397, 502
HpyCH4V	TGCA	7 cut(s)	247, 299, 377, 581, 1012, 1105, 1109
HpyF10VI	GCNNNNNNNGC	5 cut(s)	578, 821, 1018, 1115, 1132
HpyF3I	CTNAG	3 cut(s)	684, 892, 1092
HpySE526I	ACGT	3 cut(s)	213, 397, 502
Hsp92II	CATG	7 cut(s)	391, 440, 913, 982, 1012, 1109, 1126
HspAI	GCGC	1 cut(s)	536
Kzo9I	GATC	4 cut(s)	95, 289, 369, 853
LmnI	GCTCC	3 cut(s)	113, 875, 1069
Lsp1109I	GCAGC	3 cut(s)	138, 283, 727
LweI	GCATC	2 cut(s)	95, 1092
MaeI	CTAG	2 cut(s)	428, 906
MaeII	ACGT	3 cut(s)	213, 397, 502
MaeIII	GTNAC	3 cut(s)	184, 214, 1042
MalI	GATC	4 cut(s)	97, 291, 371, 855
MboI	GATC	4 cut(s)	95, 289, 369, 853
MboII	GAAGA	6 cut(s)	9, 51, 183, 292, 367, 994
MluCI	AATT	3 cut(s)	630, 945, 1069
MlyI	GAGTC	2 cut(s)	94, 147
MmeI	TCCRAC	3 cut(s)	181, 650, 679
Mph1103I	ATGCAT	2 cut(s)	1014, 1107
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	3 cut(s)	252, 467, 530
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	78, 146
Mva1269I	GAATGC	1 cut(s)	1120
MvnI	CGCG	2 cut(s)	29, 538
MwoI	GCNNNNNNNGC	5 cut(s)	578, 821, 1018, 1115, 1132
NdeII	GATC	4 cut(s)	95, 289, 369, 853
NheI	GCTAGC	1 cut(s)	905
NlaIII	CATG	7 cut(s)	391, 440, 913, 982, 1012, 1109, 1126
NlaIV	GGNNCC	3 cut(s)	453, 994, 1065
NmuCI	GTSAC	1 cut(s)	1042
NsiI	ATGCAT	2 cut(s)	1014, 1107
NspI	RCATGY	1 cut(s)	1109
OliI	CACNNNNGTG	1 cut(s)	252
PaeI	GCATGC	1 cut(s)	1109
PagI	TCATGA	1 cut(s)	978
PctI	GAATGC	1 cut(s)	1120
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	162, 932, 1096
PkrI	GCNGC	6 cut(s)	7, 10, 115, 128, 298, 742
Ple19I	CGATCG	1 cut(s)	98
PleI	GAGTC	2 cut(s)	93, 147
PmaCI	CACGTG	2 cut(s)	398, 503
PmlI	CACGTG	2 cut(s)	398, 503
PpsI	GAGTC	2 cut(s)	93, 147
Ppu21I	YACGTR	2 cut(s)	398, 503
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
PspCI	CACGTG	2 cut(s)	398, 503
PspN4I	GGNNCC	3 cut(s)	453, 994, 1065
PspPI	GGNCC	2 cut(s)	452, 992
PspPPI	RGGWCCY	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	301
PvuI	CGATCG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	588, 890
RsaNI	GTAC	2 cut(s)	587, 889
RseI	CAYNNNNRTG	3 cut(s)	252, 467, 530
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	6 cut(s)	6, 9, 114, 127, 297, 741
Sau3AI	GATC	4 cut(s)	95, 289, 369, 853
Sau96I	GGNCC	2 cut(s)	452, 992
SchI	GAGTC	2 cut(s)	94, 147
SfaNI	GCATC	2 cut(s)	95, 1092
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	3 cut(s)	252, 467, 530
SphI	GCATGC	1 cut(s)	1109
Sse9I	AATT	3 cut(s)	630, 945, 1069
SsiI	CCGC	6 cut(s)	5, 8, 111, 114, 478, 1025
SspMI	CTAG	2 cut(s)	428, 906
TaaI	ACNGT	2 cut(s)	586, 805
TaiI	ACGT	3 cut(s)	216, 400, 505
TaqI	TCGA	3 cut(s)	103, 292, 657
TasI	AATT	3 cut(s)	630, 945, 1069
TatI	WGTACW	1 cut(s)	888
TauI	GCSGC	3 cut(s)	8, 11, 116
TfiI	GAWTC	3 cut(s)	162, 932, 1096
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	1042
TseI	GCWGC	3 cut(s)	126, 296, 740
Tsp45I	GTSAC	1 cut(s)	1042
TspDTI	ATGAA	5 cut(s)	393, 984, 995, 997, 1118
TspGWI	ACGGA	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	945, 1069
XceI	RCATGY	1 cut(s)	1109
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	2 cut(s)	428, 906
Zsp2I	ATGCAT	2 cut(s)	1014, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.