Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0014325

Physical Location & Seq

Genomic Coordinates Forward (+)

2068815 .. 2071531

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1028500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGGCGGCGATTTCTTCTCACCTCGCGTTCCGATCAGACAAACCTTCTCTCTCCTCTTCATTTTCTTCTTTCTCCGGCCAGAGTATCCGCCGATCGCCTCGATGCTCCGCCAAGCTCACCGGCATTTCCCGGCCTTCTCTGGCGAGCCTCCGACGAATATCGTGCCAGACCTCCGTTGCTACTTCTTCGCCTGCGTCGGTCGCCGACGGAACAGCAAAATCTGAACTGAAGGATTTTCTGCACATAAATGATTTTGACAAATCCACCATTCTGAAGATCTTAGACCGAGCTGCGGAGGTCAAGGCACTTCTCAAATCAGGAGACAGGTCATTTCAACCTTTTAAGGGGAAGACAATGGCTATGATCTTTGCAAAGCCTTCCATGAGAACACGTGTCTCATTCGAGACTGGGTTTTCCTTGCTAGGAGGTCATGCCATATACTTGGGACCTGATGCCATTCAGATGGGTAAGCGGGAGGAAACTCGGGATGTTGCACGTGTTCTGTCTCGCTATAATGACATTATTATGGCGCGCGTCTTTGCTCATCAGGATATCCTTGATTTGGCTAAATATTCAACTGTACCCGTTGTCAATGGCTTGACAGACTACAACCATCCCTGTCAAATTATGGCTGATGTCCTCACTATCATTGAACACATTGGTCAGATAGAAGGAACTAAGGTTGTCTATGTCGGAGATGGAAACAACATTGTCCACTCCTGGTTGTTGATGGCTGCTGTTATTCCTTTCCACTTCGTTTGTGCCTGTCCCAAGGGTTTTGAACCAGATAAGGAAACAGTTGAGAAGGCGCAGCAGGCGGGTATCAGCAAGATTGAGATTACAAACGATCCAAAGGAAGCGGTCAAAGGAGCTGATGTTGTGTACTCGGATGTGTGGGCTAGCATGGGGCAAAAGGAGGAGGCTGATTCTCGCCGTAAAATTTTCCAAGGATTTCAGGTCGATGAAAATCTAATGAAGATAGCAGGGCCGAAAGCCTATTTCATGCATTGTTTACCAGCAGAAAGAGGAGTGGAAGTGACCGACGAAGTAGTTGAGGCTCCAAATTCTATCGTCTTTCCCCAAGCCGAGAATCGCATGCACGCACAGAACGCTATCATGCTTCATCTGCTCGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004585 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0016743 GO:0019627 GO:0019752 GO:0034641 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 map00220 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

381

Amino Acids

41.67

Weight (kDa)

8.14

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	78 - 219	1.3e-47	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	225 - 376	1.7e-60	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75330
fragaria_vesca	FvH4_2g39540
malus_domestica	MD08G1028500.v1.1 MD15G1024200.v1.1
prunus_persica	Prupe.1G376500_v2.0.a1
pyrus_communis	pycom08g02260 pycom15g02080
rosa_chinensis	RchiOBHm_Chr6g0301371
rosa_laevigata	RLG00000011256
rosa_multiflora	Rmu_sc0013354.1_g000027
rosa_roxburghii	Rroxscaffold_7G00166870
rosa_rugosa	Rorug06G0304300
rosa_samantha	Rh6AG417700 Rh6BG424400 Rh6CG431500 Rh6DG417400
rosa_wichuraiana	Rw6G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	29, 535, 537
AciI	CCGC	8 cut(s)	5, 8, 91, 111, 296, 475, 821, 863
AclWI	GGATC	1 cut(s)	845
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	942, 1066
AcuI	CTGAAG	2 cut(s)	251, 296
AcvI	CACGTG	2 cut(s)	395, 500
AfaI	GTAC	2 cut(s)	585, 887
AfiI	CCNNNNNNNGG	3 cut(s)	295, 347, 565
AflIII	ACRYGT	3 cut(s)	392, 394, 499
AgsI	TTSAA	4 cut(s)	338, 579, 656, 785
AjnI	CCWGG	1 cut(s)	722
AluBI	AGCT	3 cut(s)	118, 293, 875
AluI	AGCT	3 cut(s)	118, 293, 875
Alw26I	GTCTC	4 cut(s)	318, 401, 403, 513
AlwI	GGATC	1 cut(s)	845
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	3 cut(s)	79, 134, 989
ApeKI	GCWGC	3 cut(s)	293, 737, 814
ApoI	RAATTY	2 cut(s)	942, 1066
AspLEI	GCGC	3 cut(s)	535, 537, 814
AspS9I	GGNCC	2 cut(s)	449, 989
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	14, 112
AsuNHI	GCTAGC	1 cut(s)	902
AvaI	CYCGRG	1 cut(s)	486
AvaII	GGWCC	1 cut(s)	449
BbrPI	CACGTG	2 cut(s)	395, 500
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	280, 724, 826
BccI	CCATC	4 cut(s)	460, 624, 695, 727
BceAI	ACGGC	1 cut(s)	921
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BciT130I	CCWGG	1 cut(s)	724
BciVI	GTATCC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	4 cut(s)	318, 401, 403, 513
BfaI	CTAG	2 cut(s)	425, 903
BfuI	GTATCC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	5 cut(s)	6, 9, 294, 738, 815
BlsI	GCNGC	5 cut(s)	7, 10, 295, 739, 816
Bme1390I	CCNGG	2 cut(s)	133, 724
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	2 cut(s)	449, 989
BmiI	GGNNCC	2 cut(s)	450, 1062
BmrFI	CCNGG	2 cut(s)	133, 724
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	2 cut(s)	95, 445
BmtI	GCTAGC	1 cut(s)	906
BmuI	ACTGGG	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	133
BsaAI	YACGTR	2 cut(s)	395, 500
BsaBI	GATNNNNATC	1 cut(s)	969
BsaJI	CCNNGG	2 cut(s)	774, 949
BsaXI	ACNNNNNCTCC	4 cut(s)	864, 894, 1023, 1053
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 347, 565
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	969
BseBI	CCWGG	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	774, 949
BseGI	GGATG	3 cut(s)	496, 616, 898
BseJI	GATNNNNATC	1 cut(s)	969
BseLI	CCNNNNNNNGG	3 cut(s)	295, 347, 565
BseNI	ACTGG	1 cut(s)	415
BsePI	GCGCGC	1 cut(s)	533
BseRI	GAGGAG	3 cut(s)	46, 935, 1044
BseXI	GCAGC	3 cut(s)	280, 724, 826
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	3 cut(s)	29, 535, 537
Bsh1285I	CGRYCG	2 cut(s)	98, 204
BshFI	GGCC	3 cut(s)	81, 136, 991
BsiEI	CGRYCG	2 cut(s)	98, 204
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	3 cut(s)	78, 123, 133
BslFI	GGGAC	2 cut(s)	462, 756
BslI	CCNNNNNNNGG	3 cut(s)	295, 347, 565
BsmAI	GTCTC	4 cut(s)	318, 401, 403, 513
BsmFI	GGGAC	2 cut(s)	462, 756
BsnI	GGCC	3 cut(s)	81, 136, 991
BsoBI	CYCGRG	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	35, 95, 279, 366, 850
BspACI	CCGC	8 cut(s)	5, 8, 91, 111, 296, 475, 821, 863
BspANI	GGCC	3 cut(s)	81, 136, 991
BspFNI	CGCG	3 cut(s)	29, 535, 537
BspLI	GGNNCC	2 cut(s)	450, 1062
BspOI	GCTAGC	1 cut(s)	906
BspPI	GGATC	1 cut(s)	845
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	774, 949
BssHII	GCGCGC	1 cut(s)	533
BssMI	GATC	5 cut(s)	35, 95, 279, 366, 850
BssT1I	CCWWGG	2 cut(s)	774, 949
Bst2UI	CCWGG	1 cut(s)	724
Bst4CI	ACNGT	2 cut(s)	583, 802
Bst6I	CTCTTC	1 cut(s)	64
BstBAI	YACGTR	2 cut(s)	395, 500
BstC8I	GCNNGC	7 cut(s)	148, 195, 535, 819, 904, 1100, 1104
BstDEI	CTNAG	2 cut(s)	283, 681
BstF5I	GGATG	3 cut(s)	496, 616, 898
BstFNI	CGCG	3 cut(s)	29, 535, 537
BstHHI	GCGC	3 cut(s)	535, 537, 814
BstKTI	GATC	5 cut(s)	38, 98, 282, 369, 853
BstMAI	GTCTC	4 cut(s)	318, 401, 403, 513
BstMBI	GATC	5 cut(s)	35, 95, 279, 366, 850
BstMCI	CGRYCG	2 cut(s)	98, 204
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 818, 1112, 1129
BstNI	CCWGG	1 cut(s)	724
BstNSI	RCATGY	1 cut(s)	1102
BstSCI	CCNGG	2 cut(s)	131, 722
BstUI	CGCG	3 cut(s)	29, 535, 537
BstV1I	GCAGC	3 cut(s)	280, 724, 826
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	279
BstXI	CCANNNNNNTGG	2 cut(s)	445, 466
BstYI	RGATCY	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	98
BsuRI	GGCC	3 cut(s)	81, 136, 991
BtsCI	GGATG	3 cut(s)	496, 616, 898
Cac8I	GCNNGC	7 cut(s)	148, 195, 535, 819, 904, 1100, 1104
CfoI	GCGC	3 cut(s)	535, 537, 814
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	449, 989
CseI	GACGC	2 cut(s)	186, 526
Csp6I	GTAC	2 cut(s)	584, 886
CspCI	CAANNNNNGTGG	2 cut(s)	743, 778
CviAII	CATG	6 cut(s)	385, 434, 907, 1006, 1099, 1120
CviQI	GTAC	2 cut(s)	584, 886
DdeI	CTNAG	2 cut(s)	283, 681
DpnI	GATC	5 cut(s)	37, 97, 281, 368, 852
DpnII	GATC	5 cut(s)	35, 95, 279, 366, 850
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	2 cut(s)	80, 100
Eco130I	CCWWGG	2 cut(s)	774, 949
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	251, 296
Eco72I	CACGTG	2 cut(s)	395, 500
Eco88I	CYCGRG	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	722
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	774, 949
EcoT22I	ATGCAT	1 cut(s)	1011
ErhI	CCWWGG	2 cut(s)	774, 949
FaeI	CATG	6 cut(s)	388, 437, 910, 1009, 1102, 1123
FaqI	GGGAC	2 cut(s)	462, 756
FatI	CATG	6 cut(s)	384, 433, 906, 1005, 1098, 1119
FauI	CCCGC	2 cut(s)	468, 814
Fnu4HI	GCNGC	5 cut(s)	6, 9, 294, 738, 815
FokI	GGATG	3 cut(s)	503, 603, 905
Fsp4HI	GCNGC	5 cut(s)	6, 9, 294, 738, 815
FspBI	CTAG	2 cut(s)	425, 903
GlaI	GCGC	3 cut(s)	534, 536, 813
GluI	GCNGC	5 cut(s)	6, 9, 294, 738, 815
HaeIII	GGCC	3 cut(s)	81, 136, 991
HapII	CCGG	3 cut(s)	78, 123, 133
HgaI	GACGC	2 cut(s)	186, 526
HhaI	GCGC	3 cut(s)	535, 537, 814
Hin1II	CATG	6 cut(s)	388, 437, 910, 1009, 1102, 1123
Hin6I	GCGC	3 cut(s)	533, 535, 812
HinP1I	GCGC	3 cut(s)	533, 535, 812
HinfI	GANTC	2 cut(s)	929, 1093
HpaII	CCGG	3 cut(s)	78, 123, 133
HphI	GGTGA	2 cut(s)	14, 112
Hpy166II	GTNNAC	3 cut(s)	718, 886, 1016
Hpy188III	TCNNGA	4 cut(s)	321, 406, 488, 551
Hpy8I	GTNNAC	3 cut(s)	718, 886, 1016
Hpy99I	CGWCG	4 cut(s)	159, 202, 212, 1049
HpyAV	CCTTC	6 cut(s)	57, 147, 226, 390, 668, 802
HpyCH4III	ACNGT	2 cut(s)	583, 802
HpyCH4IV	ACGT	2 cut(s)	394, 499
HpyCH4V	TGCA	5 cut(s)	244, 374, 497, 1009, 1102
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 818, 1112, 1129
HpyF3I	CTNAG	2 cut(s)	283, 681
HpySE526I	ACGT	2 cut(s)	394, 499
Hsp92II	CATG	6 cut(s)	388, 437, 910, 1009, 1102, 1123
HspAI	GCGC	3 cut(s)	533, 535, 812
Kzo9I	GATC	5 cut(s)	35, 95, 279, 366, 850
LmnI	GCTCC	3 cut(s)	113, 872, 1066
Lsp1109I	GCAGC	3 cut(s)	280, 724, 826
LweI	GCATC	2 cut(s)	95, 445
MaeI	CTAG	2 cut(s)	425, 903
MaeII	ACGT	2 cut(s)	394, 499
MaeIII	GTNAC	1 cut(s)	1039
MalI	GATC	5 cut(s)	37, 97, 281, 368, 852
MboI	GATC	5 cut(s)	35, 95, 279, 366, 850
MboII	GAAGA	7 cut(s)	9, 51, 60, 180, 289, 364, 991
MflI	RGATCY	1 cut(s)	279
MluCI	AATT	3 cut(s)	627, 942, 1066
MmeI	TCCRAC	2 cut(s)	178, 676
Mph1103I	ATGCAT	1 cut(s)	1011
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	3 cut(s)	249, 464, 527
MspI	CCGG	3 cut(s)	78, 123, 133
MspR9I	CCNGG	2 cut(s)	133, 724
MvaI	CCWGG	1 cut(s)	724
MvnI	CGCG	3 cut(s)	29, 535, 537
MwoI	GCNNNNNNNGC	4 cut(s)	203, 818, 1112, 1129
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	5 cut(s)	35, 95, 279, 366, 850
NheI	GCTAGC	1 cut(s)	902
NlaIII	CATG	6 cut(s)	388, 437, 910, 1009, 1102, 1123
NlaIV	GGNNCC	2 cut(s)	450, 1062
NmeAIII	GCCGAG	1 cut(s)	1114
NmuCI	GTSAC	1 cut(s)	1039
NsiI	ATGCAT	1 cut(s)	1011
NspI	RCATGY	1 cut(s)	1102
PaeI	GCATGC	1 cut(s)	1102
PauI	GCGCGC	1 cut(s)	533
PfeI	GAWTC	2 cut(s)	929, 1093
PkrI	GCNGC	5 cut(s)	7, 10, 295, 739, 816
Ple19I	CGATCG	1 cut(s)	98
PmaCI	CACGTG	2 cut(s)	395, 500
PmlI	CACGTG	2 cut(s)	395, 500
Ppu21I	YACGTR	2 cut(s)	395, 500
PpuMI	RGGWCCY	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	722
PspCI	CACGTG	2 cut(s)	395, 500
PspGI	CCWGG	1 cut(s)	722
PspN4I	GGNNCC	2 cut(s)	450, 1062
PspPI	GGNCC	2 cut(s)	449, 989
PspPPI	RGGWCCY	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	279
PteI	GCGCGC	1 cut(s)	533
PvuI	CGATCG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	585, 887
RsaNI	GTAC	2 cut(s)	584, 886
RseI	CAYNNNNRTG	3 cut(s)	249, 464, 527
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	5 cut(s)	6, 9, 294, 738, 815
Sau3AI	GATC	5 cut(s)	35, 95, 279, 366, 850
Sau96I	GGNCC	2 cut(s)	449, 989
ScrFI	CCNGG	2 cut(s)	133, 724
SfaNI	GCATC	2 cut(s)	95, 445
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	3 cut(s)	249, 464, 527
SphI	GCATGC	1 cut(s)	1102
Sse9I	AATT	3 cut(s)	627, 942, 1066
SsiI	CCGC	8 cut(s)	5, 8, 91, 111, 296, 475, 821, 863
SspI	AATATT	1 cut(s)	575
SspMI	CTAG	2 cut(s)	425, 903
StyD4I	CCNGG	2 cut(s)	131, 722
StyI	CCWWGG	2 cut(s)	774, 949
TaaI	ACNGT	2 cut(s)	583, 802
TaiI	ACGT	2 cut(s)	397, 502
TaqI	TCGA	3 cut(s)	103, 405, 963
TaqII	GACCGA	3 cut(s)	190, 303, 1058
TasI	AATT	3 cut(s)	627, 942, 1066
TatI	WGTACW	1 cut(s)	885
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	2 cut(s)	929, 1093
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	1039
TseI	GCWGC	3 cut(s)	293, 737, 814
Tsp45I	GTSAC	1 cut(s)	1039
TspDTI	ATGAA	5 cut(s)	51, 981, 992, 994, 1115
TspGWI	ACGGA	2 cut(s)	166, 225
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	2 cut(s)	942, 1066
XceI	RCATGY	1 cut(s)	1102
XspI	CTAG	2 cut(s)	425, 903
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.