Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010103

Physical Location & Seq

Genomic Coordinates Reverse (-)

28268968 .. 28272081

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGAGGAAGGAACTGTGTAGAAACTTTCAGCGTGGCAGTTGTAGGTATGGGGAAAACTGTAGATTTCTTCATCCACAACAAGCTAAGCCAAATAATCCCTTTGGCTTTGGTACACAAAACCAACAACAACAACAGCAGCAGCAGCAACAAAATAGTTCGAACCCTTTTGGATTTGGTGTACAAAGTGGTGGTTCCAGCAGACCGAATCAGTTCCAGAATACTTGGTCACGAACGGCTTCTACACCTACTGGTGGTGGTGCTGCTGCTTCTACACAGCAGACTGGTAAACAGACGCAGCCGGCAGATCATAAATGCACAGATCCTGCTGCGTGTAAGCGGGTAATGCAAGACGATTTTAAGAATGAGAGACCCATGTGGAAGCTCACATGCTACGGCCACTGGAAATATTTTCCATGTGATGTTACCGGTGATATCAGCTATGAAGAACTACGTGCAGTGGCATATGAAGAAGCTAAACGAGGAATACCTCTACAGTCGATTGTTGAAAGGGAGAGGAATCTGCAAAATTCCAAAATAGCCGAGTTTGAAAACTTTCTACGGAATCCATACAAAGGCTCTGTTACCGCCAATCAAAGCCCGTTTGCTGCAACCACTCCTAGTATCTTCCCTCAGTCCAGTCAGATCAATTCCCCTTCTCCAGCATTCTCTGGCTTTAATCAACAAACTGCATTCTCCAATACCAATGCGGGTGGACTCAGTTCATCTGGACCTCCGAATGCCTTTGCAAGCTTCAATCAACAAACTACATTCCCCAATACCAATGCTGGTGGAGTCAGTTCATCTGGACCTCCGAACCCCTTTGCAAGCTTTACTCAACAATCAAATAATCAACAAACTGCATTCTCCAATACCAACGCTGGTGGTCTCAGTTCATCTGGACCTCCGAATGCCTTTGCAAGCTTTAATAAACAACCAAATGCTTTCAGCGTCAACACTCCTCAACCTGTTCCTTCAGGTCCCTCTGGTTTCCAAACCAATCCATCAACAACATTCAAACCAGCATCATTTGGACCTGGACCCGGATTTGCCACAACTCCACAAAACAATAACATCTTTGGTCAATCAACTCCAACACCGGCTACAAACACTTCCCAGAACAATCAGACCGCATTCAACTTCAATGTCCCTGTTGCATCTTTTACTGCTCCTGCTATAAACACGACAAATACATCTTCCGGAACCGAGCTGCAAATAGGTGGTGATCCTGTTGATAGTAGTATCTGGCTAAAGGAGAAATGGAATCCAGGGGAGATTCCGGAACAAGCGCCGCCTGATGCCTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1900457 GO:1900458 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

435

Amino Acids

46.8

Weight (kDa)

8.81

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75340 AT1G75340 AT1G75340
fragaria_vesca	FvH4_4g00131
malus_domestica	MD04G1000600.v1.1
prunus_persica	Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0384751
rosa_laevigata	RLG00000010275
rosa_multiflora	Rmu_sc0001322.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332810
rosa_rugosa	Rorug03G0297500
rosa_samantha	Rh4AG000900 Rh4BG000800 Rh4CG000700 Rh4DG000800
rosa_wichuraiana	Rw0G021990 Rw4G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	1196, 1276
AciI	CCGC	5 cut(s)	337, 585, 707, 1128, 1289
AclWI	GGATC	2 cut(s)	314, 1217
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	957
AfaI	GTAC	2 cut(s)	112, 180
AfiI	CCNNNNNNNGG	3 cut(s)	251, 572, 1040
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	6 cut(s)	506, 548, 754, 1015, 1135, 1141
AjnI	CCWGG	2 cut(s)	1033, 1264
AluBI	AGCT	8 cut(s)	83, 382, 438, 473, 750, 828, 921, 1207
AluI	AGCT	8 cut(s)	83, 382, 438, 473, 750, 828, 921, 1207
Alw26I	GTCTC	2 cut(s)	361, 890
AlwI	GGATC	2 cut(s)	314, 1217
AlwNI	CAGNNNCTG	1 cut(s)	323
Aor13HI	TCCGGA	2 cut(s)	1196, 1276
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	9 cut(s)	136, 139, 142, 260, 263, 295, 326, 605, 1207
ApoI	RAATTY	1 cut(s)	526
AsiGI	ACCGGT	1 cut(s)	425
Asp700I	GAANNNNTTC	3 cut(s)	209, 235, 552
AspLEI	GCGC	1 cut(s)	1288
AspS9I	GGNCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
AsuC2I	CCSGG	1 cut(s)	1041
AsuHPI	GGTGA	2 cut(s)	440, 1232
AsuII	TTCGAA	1 cut(s)	158
AvaII	GGWCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
BbvI	GCAGC	9 cut(s)	148, 151, 154, 247, 250, 307, 313, 592, 1194
BccI	CCATC	1 cut(s)	1009
BceAI	ACGGC	2 cut(s)	249, 409
BciT130I	CCWGG	2 cut(s)	1035, 1266
BcnI	CCSGG	1 cut(s)	1041
BcoDI	GTCTC	2 cut(s)	361, 890
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	2 cut(s)	58, 491
BfoI	RGCGCY	1 cut(s)	1289
BlpI	GCTNAGC	1 cut(s)	84
Bme1390I	CCNGG	3 cut(s)	1035, 1041, 1266
Bme18I	GGWCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
BmgT120I	GGNCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
BmiI	GGNNCC	4 cut(s)	193, 979, 1039, 1201
BmrFI	CCNGG	3 cut(s)	1035, 1041, 1266
BmsI	GCATC	3 cut(s)	1031, 1163, 1285
BpmI	CTGGAG	1 cut(s)	642
Bpu1102I	GCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	1041
BsaAI	YACGTR	1 cut(s)	452
BsaI	GGTCTC	2 cut(s)	361, 890
BsaJI	CCNNGG	1 cut(s)	1265
BsaWI	WCCGGW	3 cut(s)	425, 1196, 1276
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 572, 1040
Bse118I	RCCGGY	3 cut(s)	298, 425, 1096
Bse1I	ACTGG	4 cut(s)	253, 286, 404, 636
BseAI	TCCGGA	2 cut(s)	1196, 1276
BseBI	CCWGG	2 cut(s)	1035, 1266
BseDI	CCNNGG	1 cut(s)	1265
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	3 cut(s)	251, 572, 1040
BseMII	CTCAG	3 cut(s)	644, 730, 901
BseNI	ACTGG	4 cut(s)	253, 286, 404, 636
BseRI	GAGGAG	1 cut(s)	948
BseXI	GCAGC	9 cut(s)	148, 151, 154, 247, 250, 307, 313, 592, 1194
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	396
BshTI	ACCGGT	1 cut(s)	425
BsiSI	CCGG	6 cut(s)	299, 426, 1041, 1097, 1197, 1277
BslFI	GGGAC	2 cut(s)	963, 1130
BslI	CCNNNNNNNGG	3 cut(s)	251, 572, 1040
BsmAI	GTCTC	2 cut(s)	361, 890
BsmFI	GGGAC	2 cut(s)	963, 1130
BsmI	GAATGC	6 cut(s)	662, 689, 742, 860, 913, 1130
BsnI	GGCC	1 cut(s)	396
Bso31I	GGTCTC	2 cut(s)	361, 890
Bsp119I	TTCGAA	1 cut(s)	158
Bsp13I	TCCGGA	2 cut(s)	1196, 1276
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	304, 319, 642, 1222
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	5 cut(s)	337, 585, 707, 1128, 1289
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	3 cut(s)	643, 729, 900
BspEI	TCCGGA	2 cut(s)	1196, 1276
BspLI	GGNNCC	4 cut(s)	193, 979, 1039, 1201
BspPI	GGATC	2 cut(s)	314, 1217
BspT104I	TTCGAA	1 cut(s)	158
BspTNI	GGTCTC	2 cut(s)	361, 890
BsrFI	RCCGGY	3 cut(s)	298, 425, 1096
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	253, 286, 404, 636
BssAI	RCCGGY	3 cut(s)	298, 425, 1096
BssECI	CCNNGG	1 cut(s)	1265
BssMI	GATC	4 cut(s)	304, 319, 642, 1222
Bst2UI	CCWGG	2 cut(s)	1035, 1266
Bst4CI	ACNGT	3 cut(s)	15, 59, 495
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	452
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	4 cut(s)	300, 748, 826, 919
BstDEI	CTNAG	4 cut(s)	84, 630, 716, 887
BstF5I	GGATG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	1289
BstHHI	GCGC	1 cut(s)	1288
BstKTI	GATC	4 cut(s)	307, 322, 645, 1225
BstMAI	GTCTC	2 cut(s)	361, 890
BstMBI	GATC	4 cut(s)	304, 319, 642, 1222
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 343
BstNI	CCWGG	2 cut(s)	1035, 1266
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	3 cut(s)	1033, 1039, 1264
BstSFI	CTRYAG	2 cut(s)	58, 491
BstV1I	GCAGC	9 cut(s)	148, 151, 154, 247, 250, 307, 313, 592, 1194
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	397, 462
Cac8I	GCNNGC	4 cut(s)	300, 748, 826, 919
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	1 cut(s)	1288
Cfr10I	RCCGGY	3 cut(s)	298, 425, 1096
Cfr13I	GGNCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
CseI	GACGC	2 cut(s)	301, 937
Csp6I	GTAC	2 cut(s)	111, 179
CspAI	ACCGGT	1 cut(s)	425
CspCI	CAANNNNNGTGG	6 cut(s)	691, 726, 769, 804, 862, 897
CviAII	CATG	3 cut(s)	373, 387, 414
CviQI	GTAC	2 cut(s)	111, 179
DdeI	CTNAG	4 cut(s)	84, 630, 716, 887
DpnI	GATC	4 cut(s)	306, 321, 644, 1224
DpnII	GATC	4 cut(s)	304, 319, 642, 1222
EaeI	YGGCCR	1 cut(s)	394
Eco31I	GGTCTC	2 cut(s)	361, 890
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
Eco57I	CTGAAG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	977
EcoRII	CCWGG	2 cut(s)	1033, 1264
EcoRV	GATATC	1 cut(s)	433
FaeI	CATG	3 cut(s)	376, 390, 417
FaqI	GGGAC	2 cut(s)	963, 1130
FatI	CATG	3 cut(s)	372, 386, 413
FauI	CCCGC	2 cut(s)	330, 700
FauNDI	CATATG	1 cut(s)	463
FokI	GGATG	1 cut(s)	57
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	1 cut(s)	1287
GsuI	CTGGAG	1 cut(s)	642
HaeII	RGCGCY	1 cut(s)	1289
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	6 cut(s)	299, 426, 1041, 1097, 1197, 1277
HgaI	GACGC	2 cut(s)	301, 937
HhaI	GCGC	1 cut(s)	1288
Hin1II	CATG	3 cut(s)	376, 390, 417
Hin6I	GCGC	1 cut(s)	1286
HinP1I	GCGC	1 cut(s)	1286
HincII	GTYRAC	1 cut(s)	952
HindII	GTYRAC	1 cut(s)	952
HindIII	AAGCTT	3 cut(s)	748, 826, 919
HinfI	GANTC	7 cut(s)	205, 517, 562, 714, 792, 1261, 1273
HpaII	CCGG	6 cut(s)	299, 426, 1041, 1097, 1197, 1277
HphI	GGTGA	2 cut(s)	440, 1232
Hpy166II	GTNNAC	5 cut(s)	113, 179, 287, 713, 952
Hpy188I	TCNGA	5 cut(s)	642, 735, 813, 906, 1125
Hpy188III	TCNNGA	7 cut(s)	214, 228, 726, 804, 897, 1197, 1277
Hpy8I	GTNNAC	5 cut(s)	113, 179, 287, 713, 952
HpyAV	CCTTC	2 cut(s)	663, 981
HpyCH4III	ACNGT	3 cut(s)	15, 59, 495
HpyCH4IV	ACGT	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 343
HpyF3I	CTNAG	4 cut(s)	84, 630, 716, 887
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	376, 390, 417
HspAI	GCGC	1 cut(s)	1286
Kpn2I	TCCGGA	2 cut(s)	1196, 1276
KroI	GCCGGC	1 cut(s)	298
KroNI	GCCGGC	1 cut(s)	300
Kzo9I	GATC	4 cut(s)	304, 319, 642, 1222
LmnI	GCTCC	1 cut(s)	1171
Lsp1109I	GCAGC	9 cut(s)	148, 151, 154, 247, 250, 307, 313, 592, 1194
LweI	GCATC	3 cut(s)	1031, 1163, 1285
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	3 cut(s)	225, 421, 580
MalI	GATC	4 cut(s)	306, 321, 644, 1224
MboI	GATC	4 cut(s)	304, 319, 642, 1222
MboII	GAAGA	5 cut(s)	59, 455, 479, 616, 1185
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	2 cut(s)	526, 646
MlyI	GAGTC	2 cut(s)	708, 801
MmeI	TCCRAC	1 cut(s)	1115
MnlI	CCTC	9 cut(s)	473, 498, 507, 639, 741, 819, 912, 969, 991
MroI	TCCGGA	2 cut(s)	1196, 1276
MroNI	GCCGGC	1 cut(s)	298
MroXI	GAANNNNTTC	3 cut(s)	209, 235, 552
MseI	TTAA	4 cut(s)	357, 675, 924, 1306
MspI	CCGG	6 cut(s)	299, 426, 1041, 1097, 1197, 1277
MspR9I	CCNGG	3 cut(s)	1035, 1041, 1266
Mva1269I	GAATGC	6 cut(s)	662, 689, 742, 860, 913, 1130
MvaI	CCWGG	2 cut(s)	1035, 1266
MwoI	GCNNNNNNNGC	2 cut(s)	142, 343
NaeI	GCCGGC	1 cut(s)	300
NciI	CCSGG	1 cut(s)	1041
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	4 cut(s)	304, 319, 642, 1222
NgoMIV	GCCGGC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	376, 390, 417
NlaIV	GGNNCC	4 cut(s)	193, 979, 1039, 1201
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	390
NspV	TTCGAA	1 cut(s)	158
PctI	GAATGC	6 cut(s)	662, 689, 742, 860, 913, 1130
PdiI	GCCGGC	1 cut(s)	300
PdmI	GAANNNNTTC	3 cut(s)	209, 235, 552
PfeI	GAWTC	5 cut(s)	205, 517, 562, 1261, 1273
PinAI	ACCGGT	1 cut(s)	425
PleI	GAGTC	2 cut(s)	708, 800
PpsI	GAGTC	2 cut(s)	708, 800
Ppu21I	YACGTR	1 cut(s)	452
PpuMI	RGGWCCY	1 cut(s)	977
Psp5II	RGGWCCY	1 cut(s)	977
Psp6I	CCWGG	2 cut(s)	1033, 1264
PspGI	CCWGG	2 cut(s)	1033, 1264
PspN4I	GGNNCC	4 cut(s)	193, 979, 1039, 1201
PspPI	GGNCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
PspPPI	RGGWCCY	1 cut(s)	977
PsrI	GAACNNNNNNTAC	2 cut(s)	223, 255
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	112, 180
RsaNI	GTAC	2 cut(s)	111, 179
SaqAI	TTAA	4 cut(s)	357, 675, 924, 1306
Sau3AI	GATC	4 cut(s)	304, 319, 642, 1222
Sau96I	GGNCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
SchI	GAGTC	2 cut(s)	708, 801
ScrFI	CCNGG	3 cut(s)	1035, 1041, 1266
SfaNI	GCATC	3 cut(s)	1031, 1163, 1285
SfcI	CTRYAG	2 cut(s)	58, 491
SfuI	TTCGAA	1 cut(s)	158
SinI	GGWCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
Sse9I	AATT	2 cut(s)	526, 646
SsiI	CCGC	5 cut(s)	337, 585, 707, 1128, 1289
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	3 cut(s)	1033, 1039, 1264
TaaI	ACNGT	3 cut(s)	15, 59, 495
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	158, 497
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	526, 646
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	1291
TfiI	GAWTC	5 cut(s)	205, 517, 562, 1261, 1273
Tru1I	TTAA	4 cut(s)	357, 675, 924, 1306
Tru9I	TTAA	4 cut(s)	357, 675, 924, 1306
TscAI	CASTG	2 cut(s)	404, 462
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	9 cut(s)	136, 139, 142, 260, 263, 295, 326, 605, 1207
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	6 cut(s)	59, 456, 480, 711, 789, 882
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	2 cut(s)	404, 462
VpaK11BI	GGWCC	6 cut(s)	728, 806, 899, 977, 1031, 1037
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	390
XmnI	GAANNNNTTC	3 cut(s)	209, 235, 552
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.