Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010103

Physical Location & Seq

Genomic Coordinates Reverse (-)

65038701 .. 65044007

Gene Structure 5307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCCTGTAAAGAGAGAACCGTGCAGATACTTTCAGCTTGGCAGTTGTCAGTTTGGAGATAAGTGTAGATATCTTCATGTGACTCAGCAACAGCCAAAGTCGAACATCTTTGGTGGATTTGGGTCGCAATCTAGCTCAGATCAGCACCAAAAGTCCAATCCTTATGGTTTTGGTGTTCGTAACAACCCTCAGTCAAAAGCGGGAACTGATAAGCCTTTCGAAAACAAATGGACTCGTTCCTCCCCTGCAGCTGCTACTGCTACTCCTTCATCACGGAGATCTGATAACCAGCCCCAGACAACAAATCATGAGTGCACAAATCCCGAGTCTTGCAGAAGTATAATTAATGAAGATTTTGAGCGTGAGAGACCACTTTGGAAACTTACCTGCTATGGTCACTCAAGAAATTCTCCTTGTGATATTGTTGGTGATGTTAGTTACGAAGAATTGAGGGCACTGGCATATGATGATGCTAAGCGCGGGCTGAACTTGCCGTCAATAGTTGAAAGAGAACGAAATCTGGTTAATACCAAGTCTGTTGAGTTTGAAAATCTTCGCAAGCCCCGTGCTGTTCCACTGAACTCTACTGTTAGCCAAAGCCCCTTCGCTTCAGCTACTGCAAATGCATTCTTGCAGACTCCTCAAAGTAGTGCTCCTCCTTCGGTATCGAGTTTCAGCCAGTTTGGTACATCCCTCAATGTGGGATTTGGACAAAGCCCTTCATTGCAATTCTTTTCCAGGCCATCTGCACCAGCAAATAATGGTTTTTTTCAGCCGAGCCTGTTCATGAATTCTAGCCATGCTTCAAGTGGATTTGGGACAAACAATATTCCATCTGCAAACGTTGGTTCACTTGCCAGCCAATCTCATAACAGCACACAAGGAAGTATTTTTACACACAATGTAGGATTTGGCAACACTGATGTCATGAGACCTGACAGCAACCAAATATCTAGTTCAGCAGTGCCATCACAATTTCCTAGTGCTACAAGTAGCCAGCCACTTATTGTTTCAGACGGGCCTAGCTCTGCTTCCATTTCAAGTGGACAAGTAACTGCAGAAGCTCAGTCACTAAATAACATACAAAGAGAGAAGATTTCTGGGGACATGAGTATTTGGTTGAAAAAGAAATGGACACCTGGAGAGGTTCCAGAAGAAGAACCGCCAGATGCATTGGTTCAGATTGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1900457 GO:1900458 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

398

Amino Acids

43.14

Weight (kDa)

7.62

Isoelectric Point (pI)

67.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	4 - 27	4.5e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	7 - 26	1.2e-08	CCCH-type zinc finger
zf_CCCH_4	PF18345	8 - 26	3.8e-07	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75340 AT1G75340 AT1G75340
fragaria_vesca	FvH4_4g00131
malus_domestica	MD04G1000600.v1.1
prunus_persica	Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0384751
rosa_laevigata	RLG00000010275
rosa_multiflora	Rmu_sc0001322.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332810
rosa_rugosa	Rorug03G0297500
rosa_samantha	Rh4AG000900 Rh4BG000800 Rh4CG000700 Rh4DG000800
rosa_wichuraiana	Rw0G021990 Rw4G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccII	CGCG	1 cut(s)	480
AciI	CCGC	3 cut(s)	200, 480, 1163
AclI	AACGTT	1 cut(s)	843
AcsI	RAATTY	2 cut(s)	406, 790
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	688
AfiI	CCNNNNNNNGG	1 cut(s)	700
AgsI	TTSAA	5 cut(s)	506, 548, 807, 1041, 1123
AjnI	CCWGG	2 cut(s)	737, 1138
AluBI	AGCT	6 cut(s)	37, 135, 251, 614, 1026, 1064
AluI	AGCT	6 cut(s)	37, 135, 251, 614, 1026, 1064
Alw21I	GWGCWC	2 cut(s)	317, 655
Alw26I	GTCTC	2 cut(s)	361, 925
Alw44I	GTGCAC	1 cut(s)	313
AlwNI	CAGNNNCTG	1 cut(s)	617
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	740, 1019
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	248, 251
ApoI	RAATTY	2 cut(s)	406, 790
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AseI	ATTAAT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	1019
AsuHPI	GGTGA	1 cut(s)	440
AsuII	TTCGAA	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	323
BaeGI	GKGCMC	2 cut(s)	317, 457
BarI	GAAGNNNNNNTAC	2 cut(s)	877, 909
Bbv12I	GWGCWC	2 cut(s)	317, 655
BbvI	GCAGC	2 cut(s)	238, 260
BccI	CCATC	3 cut(s)	751, 841, 976
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	2 cut(s)	739, 1140
BcoDI	GTCTC	2 cut(s)	361, 925
BfaI	CTAG	5 cut(s)	132, 795, 954, 981, 1023
BfmI	CTRYAG	2 cut(s)	246, 1056
BfuAI	ACCTGC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	2 cut(s)	249, 252
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	2 cut(s)	250, 253
Bme1390I	CCNGG	2 cut(s)	739, 1140
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	1019
BmiI	GGNNCC	1 cut(s)	1149
BmrFI	CCNGG	2 cut(s)	739, 1140
BmsI	GCATC	2 cut(s)	460, 1159
BpmI	CTGGAG	1 cut(s)	1161
Bpu1102I	GCTNAGC	1 cut(s)	474
Bpu14I	TTCGAA	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	385
BsaI	GGTCTC	2 cut(s)	361, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse1I	ACTGG	2 cut(s)	462, 679
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	2 cut(s)	739, 1140
BseGI	GGATG	1 cut(s)	689
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	4 cut(s)	98, 150, 203, 1079
BseNI	ACTGG	2 cut(s)	462, 679
BseRI	GAGGAG	2 cut(s)	630, 645
BseSI	GKGCMC	2 cut(s)	317, 457
BseXI	GCAGC	2 cut(s)	238, 260
BsgI	GTGCAG	2 cut(s)	43, 732
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	742, 1021
BsiHKAI	GWGCWC	2 cut(s)	317, 655
BsiHKCI	CYCGRG	1 cut(s)	323
BslFI	GGGAC	2 cut(s)	832, 1118
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	2 cut(s)	361, 925
BsmFI	GGGAC	2 cut(s)	832, 1118
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	742, 1021
Bso31I	GGTCTC	2 cut(s)	361, 925
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	3 cut(s)	317, 457, 655
Bsp143I	GATC	2 cut(s)	139, 278
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	3 cut(s)	200, 480, 1163
BspANI	GGCC	2 cut(s)	742, 1021
BspCNI	CTCAG	4 cut(s)	97, 149, 202, 1078
BspFNI	CGCG	1 cut(s)	480
BspHI	TCATGA	3 cut(s)	307, 786, 927
BspLI	GGNNCC	1 cut(s)	1149
BspMAI	CTGCAG	2 cut(s)	250, 1060
BspMI	ACCTGC	1 cut(s)	395
BspT104I	TTCGAA	1 cut(s)	219
BspTNI	GGTCTC	2 cut(s)	361, 925
BsrDI	GCAATG	1 cut(s)	722
BsrI	ACTGG	2 cut(s)	462, 679
BssMI	GATC	2 cut(s)	139, 278
Bst2UI	CCWGG	2 cut(s)	739, 1140
Bst4CI	ACNGT	2 cut(s)	21, 589
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	4 cut(s)	482, 560, 859, 998
BstDEI	CTNAG	5 cut(s)	84, 136, 189, 474, 1065
BstF5I	GGATG	1 cut(s)	689
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	2 cut(s)	142, 281
BstMAI	GTCTC	2 cut(s)	361, 925
BstMBI	GATC	2 cut(s)	139, 278
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 490
BstNI	CCWGG	2 cut(s)	739, 1140
BstSCI	CCNGG	2 cut(s)	737, 1138
BstSFI	CTRYAG	2 cut(s)	246, 1056
BstSLI	GKGCMC	2 cut(s)	317, 457
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	238, 260
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	742, 1021
BtsCI	GGATG	1 cut(s)	689
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	4 cut(s)	455, 575, 918, 969
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	4 cut(s)	482, 560, 859, 998
CaiI	CAGNNNCTG	1 cut(s)	617
CciI	TCATGA	3 cut(s)	307, 786, 927
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	1019
Csp6I	GTAC	1 cut(s)	687
CviAII	CATG	6 cut(s)	77, 308, 787, 800, 928, 1108
CviQI	GTAC	1 cut(s)	687
DdeI	CTNAG	5 cut(s)	84, 136, 189, 474, 1065
DpnI	GATC	2 cut(s)	141, 280
DpnII	GATC	2 cut(s)	139, 278
Eco31I	GGTCTC	2 cut(s)	361, 925
Eco32I	GATATC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	737, 1138
EcoRV	GATATC	1 cut(s)	71
EcoT22I	ATGCAT	2 cut(s)	628, 1174
FaeI	CATG	6 cut(s)	80, 311, 790, 803, 931, 1111
FaqI	GGGAC	2 cut(s)	832, 1118
FatI	CATG	6 cut(s)	76, 307, 786, 799, 927, 1107
FauI	CCCGC	2 cut(s)	193, 473
FauNDI	CATATG	1 cut(s)	463
Fnu4HI	GCNGC	2 cut(s)	249, 252
FokI	GGATG	1 cut(s)	676
Fsp4HI	GCNGC	2 cut(s)	249, 252
FspBI	CTAG	5 cut(s)	132, 795, 954, 981, 1023
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	2 cut(s)	249, 252
GsuI	CTGGAG	1 cut(s)	1161
HaeIII	GGCC	2 cut(s)	742, 1021
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	6 cut(s)	80, 311, 790, 803, 931, 1111
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	82, 232, 326, 637
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	315, 851, 1046
Hpy188I	TCNGA	4 cut(s)	139, 283, 1015, 1182
Hpy188III	TCNNGA	6 cut(s)	308, 323, 402, 787, 928, 1151
Hpy8I	GTNNAC	3 cut(s)	315, 851, 1046
HpyAV	CCTTC	4 cut(s)	276, 613, 669, 729
HpyCH4III	ACNGT	2 cut(s)	21, 589
HpyCH4IV	ACGT	1 cut(s)	843
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 490
HpyF3I	CTNAG	5 cut(s)	84, 136, 189, 474, 1065
HpySE526I	ACGT	1 cut(s)	843
Hsp92II	CATG	6 cut(s)	80, 311, 790, 803, 931, 1111
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	139, 278
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	2 cut(s)	238, 260
LweI	GCATC	2 cut(s)	460, 1159
MaeI	CTAG	5 cut(s)	132, 795, 954, 981, 1023
MaeII	ACGT	1 cut(s)	843
MaeIII	GTNAC	6 cut(s)	79, 179, 395, 437, 1051, 1068
MalI	GATC	2 cut(s)	141, 280
MboI	GATC	2 cut(s)	139, 278
MboII	GAAGA	7 cut(s)	65, 362, 455, 545, 1105, 1166, 1169
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	3 cut(s)	317, 457, 655
MluCI	AATT	6 cut(s)	342, 406, 446, 728, 790, 974
MlyI	GAGTC	4 cut(s)	76, 226, 335, 631
MnlI	CCTC	7 cut(s)	198, 250, 444, 651, 666, 704, 1138
Mph1103I	ATGCAT	2 cut(s)	628, 1174
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	2 cut(s)	345, 525
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	739, 1140
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	2 cut(s)	739, 1140
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	257, 490
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	139, 278
NlaIII	CATG	6 cut(s)	80, 311, 790, 803, 931, 1111
NlaIV	GGNNCC	1 cut(s)	1149
NmeAIII	GCCGAG	1 cut(s)	801
NmuCI	GTSAC	3 cut(s)	79, 395, 1068
NsiI	ATGCAT	2 cut(s)	628, 1174
NspV	TTCGAA	1 cut(s)	219
PagI	TCATGA	3 cut(s)	307, 786, 927
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PctI	GAATGC	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	552
PkrI	GCNGC	2 cut(s)	250, 253
PleI	GAGTC	4 cut(s)	76, 226, 334, 631
PpsI	GAGTC	4 cut(s)	76, 226, 334, 631
PshBI	ATTAAT	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	843
Psp6I	CCWGG	2 cut(s)	737, 1138
PspGI	CCWGG	2 cut(s)	737, 1138
PspN4I	GGNNCC	1 cut(s)	1149
PspPI	GGNCC	1 cut(s)	1019
PstI	CTGCAG	2 cut(s)	250, 1060
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	688
RsaNI	GTAC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	345, 525
SatI	GCNGC	2 cut(s)	249, 252
Sau3AI	GATC	2 cut(s)	139, 278
Sau96I	GGNCC	1 cut(s)	1019
SchI	GAGTC	4 cut(s)	76, 226, 335, 631
ScrFI	CCNGG	2 cut(s)	739, 1140
SduI	GDGCHC	3 cut(s)	317, 457, 655
SfaNI	GCATC	2 cut(s)	460, 1159
SfcI	CTRYAG	2 cut(s)	246, 1056
SfuI	TTCGAA	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	6 cut(s)	342, 406, 446, 728, 790, 974
SsiI	CCGC	3 cut(s)	200, 480, 1163
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	5 cut(s)	132, 795, 954, 981, 1023
StyD4I	CCNGG	2 cut(s)	737, 1138
TaaI	ACNGT	2 cut(s)	21, 589
TaiI	ACGT	1 cut(s)	846
TaqI	TCGA	3 cut(s)	101, 219, 668
TasI	AATT	6 cut(s)	342, 406, 446, 728, 790, 974
Tru1I	TTAA	2 cut(s)	345, 525
Tru9I	TTAA	2 cut(s)	345, 525
TscAI	CASTG	4 cut(s)	462, 582, 925, 969
TseFI	GTSAC	3 cut(s)	79, 395, 1068
TseI	GCWGC	2 cut(s)	248, 251
Tsp45I	GTSAC	3 cut(s)	79, 395, 1068
TspDTI	ATGAA	6 cut(s)	65, 258, 363, 711, 775, 803
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	4 cut(s)	462, 582, 925, 969
VneI	GTGCAC	1 cut(s)	313
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	2 cut(s)	406, 790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	806
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	5 cut(s)	132, 795, 954, 981, 1023
Zsp2I	ATGCAT	2 cut(s)	628, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.