Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010103

Physical Location & Seq

Genomic Coordinates Reverse (-)

89887 .. 100651

Gene Structure 10765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G000600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCCTGTAAAGAGGGAACCCTGCAAATACTTTCAGCGTGGCAGCTGTCAGTTCGGAGATAGGTGTAAATTTCTCCATGTGATTCAGCAACAGCAAAAGTCCAATATCTTTGGATTTGGGCCACAATCTGGCTCAAACCAACAGAGAAAGTCCAATCCTTATGGTTTTGGGGTTCAAAACAACTCTCAGTCAAAAGGGCCAGCTGATTTTGGTTCCAAACAGAGCCAGTTTAAGCCTTTTGAAAACAAATGGTCCCGTTTCTCCTCCCAAACTGCTAGTGCTGCCCCTTCATCACAGAAATCTGATAAGCAGCCTCAGGCAACAAATCATAGGTGCACAGATCCCGATTCTTGCAGAAGTATAATTATTGAAGATAATGAGCATGAGAGTCCACTTTGGAAGCTTACGTGCTATGGTCACTGGAAAAATTTCCCTTGTGACATCGTTGGTGATATTAGTTACGAAGAGCTGAGGGCAGCAGCATATGATGATGCCAAGCATGGGTTGAACATGCAGTCGATAATTGAAAGAGAGAGAAATTTACTCAATACCAAGTTGATTGAGTTTGACAAACTTGGCAAGCCCCAGGGAGCTCTACTGAAACCTAATCATTCCGGCCAAAATCCTTTACCTTCAGCTAGTCAAAATGCATTCTTGCAGGCTGCTAACAATAGTGCTGCTCCGTCACTCTCAAGTTTTACCCAATTGGGCACATCCCTCAACACGGGGTTTGGACCAAGGCCGTCTGCACCATCAAATAATGGTTTTGCACAGCTGAATCCTTTTGCTAATTCCACCCAGACTTCGAGTGGATTTGGGACGAACAATTTTCTTTCTGGAAGTGCTGGTTCACATGGCAGCCAATTTCCTGCCACTGCACATGTAAATGTTTTTCCCTCGAGTACAGGATTTGGCAATACTGGTGTCATGAGACATGAAACCAACCCATTTTCTACTTTAGCAGTGTCATCACAAATTCCTAGTGCAACAACTGGTCTGCCACCCATTCTTTCAGATGGGCCTACCTCTGCTTCCAATGCAGTTAGACAATCAACTACAGAAGTTCAGTTCCTAACTAACATGCAAAGGGAGAAGATTTCTGGGGAGACGAGTATTTGGTTGAAAAAGACATGGAGTCCTGGAGAGATTCCCGAAGATGAACCGCCAGATGCACTGGTTGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1900457 GO:1900458 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

396

Amino Acids

42.93

Weight (kDa)

8.41

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75340 AT1G75340 AT1G75340
fragaria_vesca	FvH4_4g00131
malus_domestica	MD04G1000600.v1.1
prunus_persica	Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0384751
rosa_laevigata	RLG00000010275
rosa_multiflora	Rmu_sc0001322.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332810
rosa_rugosa	Rorug03G0297500
rosa_samantha	Rh4AG000900 Rh4BG000800 Rh4CG000700 Rh4DG000800
rosa_wichuraiana	Rw0G021990 Rw4G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AciI	CCGC	1 cut(s)	1163
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	4 cut(s)	68, 427, 538, 975
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	1 cut(s)	904
AfiI	CCNNNNNNNGG	3 cut(s)	128, 501, 724
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	6 cut(s)	176, 242, 371, 508, 527, 1123
AhdI	GACNNNNNGTC	1 cut(s)	1134
AjnI	CCWGG	2 cut(s)	585, 1138
AluBI	AGCT	7 cut(s)	45, 203, 403, 469, 593, 638, 775
AluI	AGCT	7 cut(s)	45, 203, 403, 469, 593, 638, 775
Alw21I	GWGCWC	2 cut(s)	338, 595
Alw26I	GTCTC	2 cut(s)	925, 1100
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	898
AoxI	GGCC	5 cut(s)	119, 197, 616, 740, 1019
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	8 cut(s)	42, 281, 310, 476, 479, 662, 677, 858
ApoI	RAATTY	4 cut(s)	68, 427, 538, 975
Asp700I	GAANNNNTTC	1 cut(s)	428
AspS9I	GGNCC	5 cut(s)	119, 197, 252, 734, 1019
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	898
AvaII	GGWCC	2 cut(s)	252, 734
AxyI	CCTNAGG	1 cut(s)	315
BaeGI	GKGCMC	2 cut(s)	338, 713
BanII	GRGCYC	1 cut(s)	595
Bbv12I	GWGCWC	2 cut(s)	338, 595
BbvCI	CCTCAGC	1 cut(s)	470
BbvI	GCAGC	8 cut(s)	54, 268, 322, 488, 491, 649, 664, 870
BccI	CCATC	2 cut(s)	760, 1010
BceAI	ACGGC	1 cut(s)	727
BciT130I	CCWGG	2 cut(s)	587, 1140
BcoDI	GTCTC	2 cut(s)	925, 1100
BfaI	CTAG	3 cut(s)	276, 639, 981
BfmI	CTRYAG	1 cut(s)	1056
BisI	GCNGC	8 cut(s)	43, 282, 311, 477, 480, 663, 678, 859
BlsI	GCNGC	8 cut(s)	44, 283, 312, 478, 481, 664, 679, 860
Bme1390I	CCNGG	2 cut(s)	587, 1140
Bme18I	GGWCC	2 cut(s)	252, 734
BmeRI	GACNNNNNGTC	1 cut(s)	1134
BmeT110I	CYCGRG	1 cut(s)	898
BmgT120I	GGNCC	5 cut(s)	119, 197, 252, 734, 1019
BmiI	GGNNCC	3 cut(s)	18, 214, 254
BmrFI	CCNGG	2 cut(s)	587, 1140
BmsI	GCATC	2 cut(s)	481, 1159
BpmI	CTGGAG	1 cut(s)	1161
Bpu10I	CCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	676
BsaAI	YACGTR	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	585, 586, 737
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 501, 724
Bse1I	ACTGG	5 cut(s)	226, 425, 925, 997, 1179
Bse21I	CCTNAGG	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	587, 1140
BseDI	CCNNGG	3 cut(s)	585, 586, 737
BseGI	GGATG	1 cut(s)	713
BseLI	CCNNNNNNNGG	3 cut(s)	128, 501, 724
BseMII	CTCAG	3 cut(s)	200, 329, 461
BseNI	ACTGG	5 cut(s)	226, 425, 925, 997, 1179
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	2 cut(s)	338, 713
BseXI	GCAGC	8 cut(s)	54, 268, 322, 488, 491, 649, 664, 870
BsgI	GTGCAG	2 cut(s)	732, 861
BshFI	GGCC	5 cut(s)	121, 199, 618, 742, 1021
BsiHKAI	GWGCWC	2 cut(s)	338, 595
BsiHKCI	CYCGRG	1 cut(s)	898
BsiSI	CCGG	1 cut(s)	615
BslFI	GGGAC	2 cut(s)	238, 832
BslI	CCNNNNNNNGG	3 cut(s)	128, 501, 724
BsmAI	GTCTC	2 cut(s)	925, 1100
BsmBI	CGTCTC	1 cut(s)	1100
BsmFI	GGGAC	2 cut(s)	238, 832
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	5 cut(s)	121, 199, 618, 742, 1021
BsoBI	CYCGRG	1 cut(s)	898
Bsp1286I	GDGCHC	3 cut(s)	338, 595, 713
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	1 cut(s)	1163
BspANI	GGCC	5 cut(s)	121, 199, 618, 742, 1021
BspCNI	CTCAG	3 cut(s)	199, 328, 462
BspHI	TCATGA	1 cut(s)	927
BspLI	GGNNCC	3 cut(s)	18, 214, 254
BspPI	GGATC	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	459
BsrI	ACTGG	5 cut(s)	226, 425, 925, 997, 1179
BssECI	CCNNGG	3 cut(s)	585, 586, 737
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	737
Bst2UI	CCWGG	2 cut(s)	587, 1140
Bst6I	CTCTTC	1 cut(s)	459
BstBAI	YACGTR	1 cut(s)	408
BstC8I	GCNNGC	3 cut(s)	201, 581, 660
BstDEI	CTNAG	3 cut(s)	186, 315, 470
BstF5I	GGATG	1 cut(s)	713
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	2 cut(s)	925, 1100
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 1037
BstNI	CCWGG	2 cut(s)	587, 1140
BstNSI	RCATGY	3 cut(s)	514, 884, 1084
BstSCI	CCNGG	2 cut(s)	585, 1138
BstSFI	CTRYAG	1 cut(s)	1056
BstSLI	GKGCMC	2 cut(s)	338, 713
BstV1I	GCAGC	8 cut(s)	54, 268, 322, 488, 491, 649, 664, 870
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	5 cut(s)	121, 199, 618, 742, 1021
BtsCI	GGATG	1 cut(s)	713
BtsI	GCAGTG	2 cut(s)	873, 969
BtsIMutI	CAGTG	4 cut(s)	418, 873, 969, 1172
Cac8I	GCNNGC	3 cut(s)	201, 581, 660
CciI	TCATGA	1 cut(s)	927
Cfr13I	GGNCC	5 cut(s)	119, 197, 252, 734, 1019
Csp6I	GTAC	1 cut(s)	903
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	3 cut(s)	186, 315, 470
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
DriI	GACNNNNNGTC	1 cut(s)	1134
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	1134
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	737
Eco24I	GRGCYC	1 cut(s)	595
Eco47I	GGWCC	2 cut(s)	252, 734
Eco53kI	GAGCTC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	618
Eco81I	CCTNAGG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	898
EcoICRI	GAGCTC	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	585, 1138
EcoT14I	CCWWGG	1 cut(s)	737
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	737
Esp3I	CGTCTC	1 cut(s)	1100
FaqI	GGGAC	2 cut(s)	238, 832
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	8 cut(s)	43, 282, 311, 477, 480, 663, 678, 859
FokI	GGATG	1 cut(s)	700
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	8 cut(s)	43, 282, 311, 477, 480, 663, 678, 859
FspBI	CTAG	3 cut(s)	276, 639, 981
GluI	GCNGC	8 cut(s)	43, 282, 311, 477, 480, 663, 678, 859
GsuI	CTGGAG	1 cut(s)	1161
HaeIII	GGCC	5 cut(s)	121, 199, 618, 742, 1021
HapII	CCGG	1 cut(s)	615
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	6 cut(s)	82, 347, 388, 778, 1135, 1147
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	3 cut(s)	336, 392, 851
Hpy188I	TCNGA	3 cut(s)	56, 304, 1015
Hpy188III	TCNNGA	4 cut(s)	344, 837, 928, 1151
Hpy8I	GTNNAC	3 cut(s)	336, 392, 851
HpyAV	CCTTC	2 cut(s)	297, 642
HpyCH4IV	ACGT	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 1037
HpyF3I	CTNAG	3 cut(s)	186, 315, 470
HpySE526I	ACGT	1 cut(s)	407
Kzo9I	GATC	1 cut(s)	340
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	2 cut(s)	590, 685
Lsp1109I	GCAGC	8 cut(s)	54, 268, 322, 488, 491, 649, 664, 870
LweI	GCATC	2 cut(s)	481, 1159
MaeI	CTAG	3 cut(s)	276, 639, 981
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	4 cut(s)	416, 437, 458, 684
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	4 cut(s)	383, 476, 1105, 1166
MfeI	CAATTG	1 cut(s)	704
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	3 cut(s)	338, 595, 713
MlyI	GAGTC	2 cut(s)	397, 1144
MnlI	CCTC	7 cut(s)	6, 274, 324, 465, 728, 907, 1036
Mph1103I	ATGCAT	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	885
MspA1I	CMGCKG	3 cut(s)	45, 203, 775
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	2 cut(s)	587, 1140
MunI	CAATTG	1 cut(s)	704
Mva1269I	GAATGC	1 cut(s)	650
MvaI	CCWGG	2 cut(s)	587, 1140
MwoI	GCNNNNNNNGC	2 cut(s)	281, 1037
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	1 cut(s)	340
NlaIV	GGNNCC	3 cut(s)	18, 214, 254
NmuCI	GTSAC	3 cut(s)	416, 437, 684
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	3 cut(s)	514, 884, 1084
PaeR7I	CTCGAG	1 cut(s)	898
PagI	TCATGA	1 cut(s)	927
PasI	CCCWGGG	1 cut(s)	586
PciI	ACATGT	1 cut(s)	880
PciSI	GCTCTTC	1 cut(s)	459
PctI	GAATGC	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	4 cut(s)	82, 347, 778, 1147
PflMI	CCANNNNNTGG	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	1138
PkrI	GCNGC	8 cut(s)	44, 283, 312, 478, 481, 664, 679, 860
PleI	GAGTC	2 cut(s)	396, 1143
PpsI	GAGTC	2 cut(s)	396, 1143
Ppu21I	YACGTR	1 cut(s)	408
PscI	ACATGT	1 cut(s)	880
Psp124BI	GAGCTC	1 cut(s)	595
Psp6I	CCWGG	2 cut(s)	585, 1138
PspGI	CCWGG	2 cut(s)	585, 1138
PspN4I	GGNNCC	3 cut(s)	18, 214, 254
PspPI	GGNCC	5 cut(s)	119, 197, 252, 734, 1019
PspXI	VCTCGAGB	1 cut(s)	898
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	3 cut(s)	45, 203, 775
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
RseI	CAYNNNNRTG	1 cut(s)	885
SacI	GAGCTC	1 cut(s)	595
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	8 cut(s)	43, 282, 311, 477, 480, 663, 678, 859
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	5 cut(s)	119, 197, 252, 734, 1019
SchI	GAGTC	2 cut(s)	397, 1144
ScrFI	CCNGG	2 cut(s)	587, 1140
SduI	GDGCHC	3 cut(s)	338, 595, 713
SfaNI	GCATC	2 cut(s)	481, 1159
SfcI	CTRYAG	1 cut(s)	1056
Sfr274I	CTCGAG	1 cut(s)	898
SinI	GGWCC	2 cut(s)	252, 734
SlaI	CTCGAG	1 cut(s)	898
SmiMI	CAYNNNNRTG	1 cut(s)	885
SmlI	CTYRAG	2 cut(s)	691, 898
SmoI	CTYRAG	2 cut(s)	691, 898
SsiI	CCGC	1 cut(s)	1163
SspMI	CTAG	3 cut(s)	276, 639, 981
SstI	GAGCTC	1 cut(s)	595
StyD4I	CCNGG	2 cut(s)	585, 1138
StyI	CCWWGG	1 cut(s)	737
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	3 cut(s)	518, 806, 899
TatI	WGTACW	1 cut(s)	902
TfiI	GAWTC	4 cut(s)	82, 347, 778, 1147
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	4 cut(s)	425, 880, 969, 1179
TseFI	GTSAC	3 cut(s)	416, 437, 684
TseI	GCWGC	8 cut(s)	42, 281, 310, 476, 479, 662, 677, 858
Tsp45I	GTSAC	3 cut(s)	416, 437, 684
TspDTI	ATGAA	3 cut(s)	279, 951, 1173
TspGWI	ACGGA	1 cut(s)	672
TspRI	CASTG	4 cut(s)	425, 880, 969, 1179
Van91I	CCANNNNNTGG	1 cut(s)	128
VneI	GTGCAC	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	252, 734
XapI	RAATTY	4 cut(s)	68, 427, 538, 975
XceI	RCATGY	3 cut(s)	514, 884, 1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	806
XhoI	CTCGAG	1 cut(s)	898
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	3 cut(s)	276, 639, 981
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.