Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010103

Physical Location & Seq

Genomic Coordinates Reverse (-)

62175 .. 67597

Gene Structure 5423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1000600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCCTGTAAAGAGAGAACCCTGCAAATTTTTTCAGCGCGGCAACTGTCAGTATGGAGATAGGTGCAAATATCTTCATGTGGTTCAGCAACAGCACAAGTCCAATCCCTTTGGATTTGGCTCCGACCAACAGCACAAGTCCAATCTCTTTGGATTTGGCTCCGACCAACAGGGAAAGTCCAACCCTTATGGTTTTGGGGTTCAAAACAATTCTCAGACAAAAGGGGCTGCTGATTTTGGTCCCAAACAGAGCCAGAATAAGCCTTTTGAAAACAAGTGGTCTCGTTTCTCCTCTGCAACTGCAGCTGCTGCCCCATCATCACAGAAATCTGATAAGCAGGCCCAGACAACAAATCATACGTGCACAGATCCCGAGTCATGCAGAAGTATAATTGTTGGCGATTTTAAGCATGAGAGACCACTTTGGAAGCTTACATGCTATGGTCACTGGAAAAATTCTCCTTGTGACATTGCTGGTGATATTAGTTACGAAGAATTGAGGGCAGCAGCATACGATGATGCCAACCGCGGGTTGAATTTGCAGTCAATAGTTGAAAGAGAGAGAAGTTTACTCAATACCAAGTTGCTTGAGTTTGAGAATCTTTGCAAGCCTCACACAGCTTTACCAAACTCTACCCTTGCCAGCCAAAACCCTTCGCCATCAGCTAGTCCAAATGGATTCTTGCAGACTGCTCAAAATAGTGTTGCTCCTTCAGTCTCAAGCTTTACCCAATTGGGCACATCCCTGAACACGGGTTTTGGACCAAGGCCATCTGCACCATCAAATAATGGTTTTCAACAGCTGAATCCTTTTCCTAATTCTTCCCAGACTCCGAGTGGTGTGGGAACAAACAATTTTCCTTCTGGAAGTGTTGTTGGCAGCCAATTCCCTGCCTCTACACATGGAAATGGTTTTCCCTCAAATATGGGACTCATCAACACTGGCATCATAAGACCTCAAACCAACCCATTTGCTACTTTAGCAGTGTCACAAATTCCTAGTGCAACAACTGGCCAGTCACCCATTGTTGGACAATCAACAACAGAAGTTGAGTTCGTAACTAACATGCAAACGGAGAAGATTTCCGGGAATACAAGTATTTGGCTGAAAAAGATATGGAGTCCTGGAGAGATTCCCGAAGAAGATCCACCAGAGGCACTGGTTGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1900457 GO:1900458 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

391

Amino Acids

42.25

Weight (kDa)

8.07

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	4 - 27	1.4e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	7 - 26	6.8e-07	CCCH-type zinc finger
zf_CCCH_4	PF18345	8 - 26	4.1e-07	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75340 AT1G75340 AT1G75340
fragaria_vesca	FvH4_4g00131
malus_domestica	MD04G1000600.v1.1
prunus_persica	Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0384751
rosa_laevigata	RLG00000010275
rosa_multiflora	Rmu_sc0001322.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332810
rosa_rugosa	Rorug03G0297500
rosa_samantha	Rh4AG000900 Rh4BG000800 Rh4CG000700 Rh4DG000800
rosa_wichuraiana	Rw0G021990 Rw4G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	39, 528
AciI	CCGC	3 cut(s)	39, 526, 528
AclWI	GGATC	2 cut(s)	362, 1139
AcoI	YGGCCR	1 cut(s)	1012
AcsI	RAATTY	4 cut(s)	26, 454, 535, 993
AcuI	CTGAAG	1 cut(s)	696
AfiI	CCNNNNNNNGG	3 cut(s)	528, 751, 1028
AgsI	TTSAA	5 cut(s)	203, 269, 535, 554, 797
AjnI	CCWGG	1 cut(s)	1123
AluBI	AGCT	6 cut(s)	305, 430, 620, 665, 723, 802
AluI	AGCT	6 cut(s)	305, 430, 620, 665, 723, 802
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	3 cut(s)	285, 409, 721
Alw44I	GTGCAC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	362, 1139
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	3 cut(s)	339, 767, 1012
ApaLI	GTGCAC	1 cut(s)	361
ApeKI	GCWGC	7 cut(s)	227, 302, 305, 308, 503, 506, 879
ApoI	RAATTY	4 cut(s)	26, 454, 535, 993
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	3 cut(s)	239, 340, 761
AsuC2I	CCSGG	1 cut(s)	1087
AsuHPI	GGTGA	2 cut(s)	488, 1011
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	239, 761
BaeGI	GKGCMC	2 cut(s)	365, 740
BalI	TGGCCA	1 cut(s)	1014
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	7 cut(s)	214, 292, 295, 314, 515, 518, 891
BccI	CCATC	4 cut(s)	322, 667, 778, 787
BciT130I	CCWGG	1 cut(s)	1125
BcnI	CCSGG	1 cut(s)	1087
BcoDI	GTCTC	3 cut(s)	285, 409, 721
BfaI	CTAG	2 cut(s)	666, 999
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	8 cut(s)	40, 228, 303, 306, 309, 504, 507, 880
BlsI	GCNGC	8 cut(s)	41, 229, 304, 307, 310, 505, 508, 881
Bme1390I	CCNGG	2 cut(s)	1087, 1125
Bme18I	GGWCC	2 cut(s)	239, 761
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	239, 340, 761
BmiI	GGNNCC	3 cut(s)	121, 160, 241
BmrFI	CCNGG	2 cut(s)	1087, 1125
BmsI	GCATC	2 cut(s)	508, 954
BpmI	CTGGAG	1 cut(s)	1146
BpuEI	CTTGAG	2 cut(s)	608, 703
BpuMI	CCSGG	1 cut(s)	1087
BsaAI	YACGTR	1 cut(s)	360
BsaI	GGTCTC	2 cut(s)	285, 409
BsaJI	CCNNGG	2 cut(s)	526, 764
Bsc4I	CCNNNNNNNGG	3 cut(s)	528, 751, 1028
Bse1I	ACTGG	5 cut(s)	452, 946, 1015, 1015, 1164
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	1125
BseDI	CCNNGG	2 cut(s)	526, 764
BseGI	GGATG	1 cut(s)	740
BseLI	CCNNNNNNNGG	3 cut(s)	528, 751, 1028
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	5 cut(s)	452, 946, 1015, 1015, 1164
BseRI	GAGGAG	1 cut(s)	280
BseSI	GKGCMC	2 cut(s)	365, 740
BseXI	GCAGC	7 cut(s)	214, 292, 295, 314, 515, 518, 891
BsgI	GTGCAG	1 cut(s)	759
Bsh1236I	CGCG	2 cut(s)	39, 528
BshFI	GGCC	3 cut(s)	341, 769, 1014
BsiHKAI	GWGCWC	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	1086
BslFI	GGGAC	2 cut(s)	225, 942
BslI	CCNNNNNNNGG	3 cut(s)	528, 751, 1028
BsmAI	GTCTC	3 cut(s)	285, 409, 721
BsmFI	GGGAC	2 cut(s)	225, 942
BsnI	GGCC	3 cut(s)	341, 769, 1014
Bso31I	GGTCTC	2 cut(s)	285, 409
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	365, 740
Bsp143I	GATC	2 cut(s)	367, 1144
BspACI	CCGC	3 cut(s)	39, 526, 528
BspANI	GGCC	3 cut(s)	341, 769, 1014
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	2 cut(s)	39, 528
BspLI	GGNNCC	3 cut(s)	121, 160, 241
BspMAI	CTGCAG	1 cut(s)	304
BspPI	GGATC	2 cut(s)	362, 1139
BspTNI	GGTCTC	2 cut(s)	285, 409
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	5 cut(s)	452, 946, 1015, 1015, 1164
BssECI	CCNNGG	2 cut(s)	526, 764
BssMI	GATC	2 cut(s)	367, 1144
BssT1I	CCWWGG	1 cut(s)	764
Bst2UI	CCWGG	1 cut(s)	1125
Bst4CI	ACNGT	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	339, 608, 643
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	1 cut(s)	740
BstFNI	CGCG	2 cut(s)	39, 528
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	370, 1147
BstMAI	GTCTC	3 cut(s)	285, 409, 721
BstMBI	GATC	2 cut(s)	367, 1144
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 308, 980
BstNI	CCWGG	1 cut(s)	1125
BstNSI	RCATGY	2 cut(s)	438, 1069
BstSCI	CCNGG	2 cut(s)	1085, 1123
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	2 cut(s)	365, 740
BstUI	CGCG	2 cut(s)	39, 528
BstV1I	GCAGC	7 cut(s)	214, 292, 295, 314, 515, 518, 891
BstX2I	RGATCY	2 cut(s)	367, 1144
BstYI	RGATCY	2 cut(s)	367, 1144
BsuRI	GGCC	3 cut(s)	341, 769, 1014
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	740
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	4 cut(s)	445, 939, 990, 1157
Cac8I	GCNNGC	3 cut(s)	339, 608, 643
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	3 cut(s)	239, 340, 761
Cfr42I	CCGCGG	1 cut(s)	529
CviAII	CATG	6 cut(s)	77, 378, 410, 435, 902, 1066
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	369, 1146
DpnII	GATC	2 cut(s)	367, 1144
EaeI	YGGCCR	1 cut(s)	1012
Eco130I	CCWWGG	1 cut(s)	764
Eco31I	GGTCTC	2 cut(s)	285, 409
Eco47I	GGWCC	2 cut(s)	239, 761
Eco57I	CTGAAG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	1123
EcoT14I	CCWWGG	1 cut(s)	764
ErhI	CCWWGG	1 cut(s)	764
FaeI	CATG	6 cut(s)	80, 381, 413, 438, 905, 1069
FaqI	GGGAC	2 cut(s)	225, 942
FatI	CATG	6 cut(s)	76, 377, 409, 434, 901, 1065
FauI	CCCGC	1 cut(s)	521
Fnu4HI	GCNGC	8 cut(s)	40, 228, 303, 306, 309, 504, 507, 880
FokI	GGATG	1 cut(s)	727
Fsp4HI	GCNGC	8 cut(s)	40, 228, 303, 306, 309, 504, 507, 880
FspBI	CTAG	2 cut(s)	666, 999
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	8 cut(s)	40, 228, 303, 306, 309, 504, 507, 880
GsuI	CTGGAG	1 cut(s)	1146
HaeIII	GGCC	3 cut(s)	341, 769, 1014
HapII	CCGG	1 cut(s)	1086
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	80, 381, 413, 438, 905, 1069
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	2 cut(s)	428, 721
HinfI	GANTC	8 cut(s)	374, 598, 678, 805, 829, 930, 1120, 1132
HpaII	CCGG	1 cut(s)	1086
HphI	GGTGA	2 cut(s)	488, 1011
Hpy166II	GTNNAC	2 cut(s)	363, 569
Hpy188I	TCNGA	5 cut(s)	124, 163, 216, 331, 834
Hpy188III	TCNNGA	3 cut(s)	371, 864, 1136
Hpy8I	GTNNAC	2 cut(s)	363, 569
HpyAV	CCTTC	3 cut(s)	663, 720, 870
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 308, 980
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	359
Hsp92II	CATG	6 cut(s)	80, 381, 413, 438, 905, 1069
HspAI	GCGC	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	367, 1144
LmnI	GCTCC	3 cut(s)	125, 164, 712
Lsp1109I	GCAGC	7 cut(s)	214, 292, 295, 314, 515, 518, 891
LweI	GCATC	2 cut(s)	508, 954
MaeI	CTAG	2 cut(s)	666, 999
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	6 cut(s)	443, 464, 485, 987, 1017, 1057
MalI	GATC	2 cut(s)	369, 1146
MboI	GATC	2 cut(s)	367, 1144
MboII	GAAGA	6 cut(s)	65, 503, 813, 1090, 1151, 1154
MfeI	CAATTG	1 cut(s)	731
MflI	RGATCY	2 cut(s)	367, 1144
MhlI	GDGCHC	2 cut(s)	365, 740
MlsI	TGGCCA	1 cut(s)	1014
MluNI	TGGCCA	1 cut(s)	1014
MlyI	GAGTC	4 cut(s)	383, 823, 924, 1129
MmeI	TCCRAC	4 cut(s)	147, 186, 204, 1009
MnlI	CCTC	7 cut(s)	301, 492, 621, 904, 928, 966, 1147
Mox20I	TGGCCA	1 cut(s)	1014
MscI	TGGCCA	1 cut(s)	1014
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	906
Msp20I	TGGCCA	1 cut(s)	1014
MspA1I	CMGCKG	3 cut(s)	305, 528, 802
MspI	CCGG	1 cut(s)	1086
MspR9I	CCNGG	2 cut(s)	1087, 1125
MunI	CAATTG	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	1125
MvnI	CGCG	2 cut(s)	39, 528
MwoI	GCNNNNNNNGC	3 cut(s)	302, 308, 980
NciI	CCSGG	1 cut(s)	1087
NdeII	GATC	2 cut(s)	367, 1144
NlaIII	CATG	6 cut(s)	80, 381, 413, 438, 905, 1069
NlaIV	GGNNCC	3 cut(s)	121, 160, 241
NmuCI	GTSAC	4 cut(s)	443, 464, 987, 1017
NspI	RCATGY	2 cut(s)	438, 1069
PfeI	GAWTC	4 cut(s)	598, 678, 805, 1132
PfoI	TCCNGGA	2 cut(s)	1085, 1123
PkrI	GCNGC	8 cut(s)	41, 229, 304, 307, 310, 505, 508, 881
PleI	GAGTC	4 cut(s)	382, 823, 924, 1128
PpsI	GAGTC	4 cut(s)	382, 823, 924, 1128
Ppu21I	YACGTR	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	1123
PspGI	CCWGG	1 cut(s)	1123
PspN4I	GGNNCC	3 cut(s)	121, 160, 241
PspPI	GGNCC	3 cut(s)	239, 340, 761
PstI	CTGCAG	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	367, 1144
PvuII	CAGCTG	2 cut(s)	305, 802
RseI	CAYNNNNRTG	1 cut(s)	906
SacII	CCGCGG	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	8 cut(s)	40, 228, 303, 306, 309, 504, 507, 880
Sau3AI	GATC	2 cut(s)	367, 1144
Sau96I	GGNCC	3 cut(s)	239, 340, 761
SchI	GAGTC	4 cut(s)	383, 823, 924, 1129
ScrFI	CCNGG	2 cut(s)	1087, 1125
SduI	GDGCHC	2 cut(s)	365, 740
SetI	ASST	9 cut(s)	65, 307, 362, 432, 622, 667, 725, 804, 958
SfaNI	GCATC	2 cut(s)	508, 954
SfcI	CTRYAG	1 cut(s)	300
Sfr303I	CCGCGG	1 cut(s)	529
SgrBI	CCGCGG	1 cut(s)	529
SinI	GGWCC	2 cut(s)	239, 761
SmiMI	CAYNNNNRTG	1 cut(s)	906
SmlI	CTYRAG	2 cut(s)	587, 718
SmoI	CTYRAG	2 cut(s)	587, 718
SsiI	CCGC	3 cut(s)	39, 526, 528
SspMI	CTAG	2 cut(s)	666, 999
StyD4I	CCNGG	2 cut(s)	1085, 1123
StyI	CCWWGG	1 cut(s)	764
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	362
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	4 cut(s)	598, 678, 805, 1132
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	4 cut(s)	452, 946, 990, 1164
TseFI	GTSAC	4 cut(s)	443, 464, 987, 1017
TseI	GCWGC	7 cut(s)	227, 302, 305, 308, 503, 506, 879
Tsp45I	GTSAC	4 cut(s)	443, 464, 987, 1017
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	1088
TspRI	CASTG	4 cut(s)	452, 946, 990, 1164
VneI	GTGCAC	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	239, 761
XapI	RAATTY	4 cut(s)	26, 454, 535, 993
XceI	RCATGY	2 cut(s)	438, 1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	833
XspI	CTAG	2 cut(s)	666, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.